HEADER TRANSFERASE 22-APR-13 4KAR TITLE CRYSTAL STRUCTURE OF FDTS (TM0449) MUTANT (H53D) WITH FAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TM0449 (UNP RESIDUES 1-220); COMPND 5 SYNONYM: TS, TSASE; COMPND 6 EC: 2.1.1.148; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: THY1, THYX, TM0449, TM_0449; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMH1 KEYWDS THYX, FDTS, H53D MUTANT, FAD, NOVEL FDTS FOLD, CONVERTION OF DUMP TO KEYWDS 2 DTMP USING TETRAHYDROFOLATE, AND NAD(P)H, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS REVDAT 2 20-SEP-23 4KAR 1 REMARK SEQADV REVDAT 1 26-MAR-14 4KAR 0 JRNL AUTH I.I.MATHEWS JRNL TITL FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE AS A DRUG TARGET FOR JRNL TITL 2 DEADLY MICROBES: MUTATIONAL STUDY AND A STRATEGY FOR JRNL TITL 3 INHIBITOR DESIGN. JRNL REF J BIOTERROR BIODEF V.L 12 004 2013 JRNL REFN ESSN 2157-2526 JRNL PMID 24563811 JRNL DOI 10.4172/2157-2526.S12-004 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.91000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : -3.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.859 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7575 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7149 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10265 ; 1.571 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16395 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 853 ; 6.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 381 ;34.992 ;22.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1293 ;15.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;19.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1096 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8262 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1885 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PACKAGE REMARK 200 DATA SCALING SOFTWARE : XDS PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 38.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1O26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 - 60% PEG200, 0.1TRIS.HCL, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A 34 REMARK 465 LEU A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ASP B 32 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 LEU B 35 REMARK 465 LYS B 36 REMARK 465 ASP B 37 REMARK 465 SER B 92 REMARK 465 LYS B 93 REMARK 465 LEU B 94 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 MET D 33 REMARK 465 GLY D 34 REMARK 465 LEU D 35 REMARK 465 LYS D 36 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 131 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 117 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -156.80 60.90 REMARK 500 GLU A 107 133.95 -39.34 REMARK 500 LEU B 6 -157.89 57.53 REMARK 500 LEU C 6 -142.15 58.34 REMARK 500 LYS C 8 14.37 -148.43 REMARK 500 ALA C 82 171.47 178.37 REMARK 500 LEU D 6 -154.18 55.45 REMARK 500 GLU D 107 124.55 -29.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FAD A 301 REMARK 610 FAD B 301 REMARK 610 FAD C 301 REMARK 610 FAD D 301 REMARK 610 2PE D 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KAS RELATED DB: PDB REMARK 900 RELATED ID: 4KAT RELATED DB: PDB DBREF 4KAR A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 4KAR B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 4KAR C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 4KAR D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 4KAR MET A -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 4KAR GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP A 53 UNP Q9WYT0 HIS 53 ENGINEERED MUTATION SEQADV 4KAR MET B -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 4KAR GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP B 53 UNP Q9WYT0 HIS 53 ENGINEERED MUTATION SEQADV 4KAR MET C -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 4KAR GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP C 53 UNP Q9WYT0 HIS 53 ENGINEERED MUTATION SEQADV 4KAR MET D -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 4KAR GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 4KAR ASP D 53 UNP Q9WYT0 HIS 53 ENGINEERED MUTATION SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY ASP SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY ASP SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY ASP SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY ASP SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET FAD A 301 35 HET FAD B 301 35 HET FAD C 301 35 HET FAD D 301 35 HET 2PE D 302 13 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 9 2PE C18 H38 O10 FORMUL 10 HOH *150(H2 O) HELIX 1 1 ASN A 19 VAL A 29 1 11 HELIX 2 2 GLU A 38 HIS A 51 1 14 HELIX 3 3 GLU A 54 HIS A 59 5 6 HELIX 4 4 ILE A 70 PHE A 77 1 8 HELIX 5 5 SER A 102 LEU A 106 5 5 HELIX 6 6 PRO A 114 SER A 139 1 26 HELIX 7 7 PRO A 142 ARG A 147 1 6 HELIX 8 8 ILE A 148 LEU A 150 5 3 HELIX 9 9 ALA A 164 ALA A 175 1 12 HELIX 10 10 GLN A 180 CYS A 198 1 19 HELIX 11 11 CYS A 198 ALA A 209 1 12 HELIX 12 12 ASN B 19 VAL B 29 1 11 HELIX 13 13 GLU B 39 GLY B 52 1 14 HELIX 14 14 GLU B 54 HIS B 59 5 6 HELIX 15 15 ILE B 70 PHE B 77 1 8 HELIX 16 16 SER B 102 GLU B 107 1 6 HELIX 17 17 PRO B 114 SER B 139 1 26 HELIX 18 18 PRO B 142 ARG B 147 1 6 HELIX 19 19 ILE B 148 LEU B 150 5 3 HELIX 20 20 ALA B 164 ALA B 175 1 12 HELIX 21 21 GLN B 180 CYS B 198 1 19 HELIX 22 22 CYS B 198 ALA B 209 1 12 HELIX 23 23 ASP B 213 GLU B 217 5 5 HELIX 24 24 ASN C 19 VAL C 29 1 11 HELIX 25 25 ASP C 37 HIS C 51 1 15 HELIX 26 26 GLU C 54 HIS C 59 5 6 HELIX 27 27 ILE C 70 PHE C 77 1 8 HELIX 28 28 SER C 102 LEU C 106 5 5 HELIX 29 29 PRO C 114 SER C 139 1 26 HELIX 30 30 PRO C 142 ARG C 147 1 6 HELIX 31 31 ILE C 148 LEU C 150 5 3 HELIX 32 32 ALA C 164 ALA C 175 1 12 HELIX 33 33 GLN C 180 CYS C 198 1 19 HELIX 34 34 CYS C 198 ALA C 209 1 12 HELIX 35 35 ASP C 213 VAL C 218 1 6 HELIX 36 36 ASN D 19 VAL D 29 1 11 HELIX 37 37 GLU D 38 HIS D 51 1 14 HELIX 38 38 GLU D 54 HIS D 59 5 6 HELIX 39 39 ILE D 70 ARG D 78 1 9 HELIX 40 40 SER D 102 LEU D 106 5 5 HELIX 41 41 PRO D 114 SER D 139 1 26 HELIX 42 42 PRO D 142 ARG D 147 1 6 HELIX 43 43 ILE D 148 LEU D 150 5 3 HELIX 44 44 ALA D 164 ALA D 175 1 12 HELIX 45 45 GLN D 180 CYS D 198 1 19 HELIX 46 46 CYS D 198 ALA D 209 1 12 HELIX 47 47 ASP D 213 GLU D 217 5 5 SHEET 1 A 5 LYS A 2 ILE A 5 0 SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 A 5 VAL A 61 PRO A 69 -1 O THR A 63 N VAL A 14 SHEET 4 A 5 TYR A 155 ASN A 163 -1 O THR A 156 N ALA A 68 SHEET 5 A 5 SER A 83 GLU A 86 -1 N SER A 83 O THR A 161 SHEET 1 B 5 LYS B 2 ILE B 5 0 SHEET 2 B 5 GLY B 9 MET B 17 -1 O VAL B 11 N ILE B 3 SHEET 3 B 5 VAL B 61 PRO B 69 -1 O VAL B 61 N MET B 17 SHEET 4 B 5 TYR B 155 ASN B 163 -1 O THR B 156 N ALA B 68 SHEET 5 B 5 SER B 83 GLU B 86 -1 N ASN B 85 O PHE B 159 SHEET 1 C 5 LYS C 2 ILE C 5 0 SHEET 2 C 5 GLY C 9 MET C 17 -1 O VAL C 11 N ILE C 3 SHEET 3 C 5 VAL C 61 PRO C 69 -1 O THR C 63 N VAL C 14 SHEET 4 C 5 TYR C 155 ASN C 163 -1 O THR C 156 N ALA C 68 SHEET 5 C 5 SER C 83 GLU C 86 -1 N SER C 83 O THR C 161 SHEET 1 D 5 LYS D 2 ILE D 5 0 SHEET 2 D 5 GLY D 9 MET D 17 -1 O VAL D 11 N ILE D 3 SHEET 3 D 5 VAL D 61 PRO D 69 -1 O THR D 63 N VAL D 14 SHEET 4 D 5 TYR D 155 ASN D 163 -1 O THR D 156 N ALA D 68 SHEET 5 D 5 SER D 83 GLU D 86 -1 N SER D 83 O THR D 161 SITE 1 AC1 15 ARG A 78 HIS A 79 ARG A 80 ILE A 81 SITE 2 AC1 15 ASN A 169 LEU A 173 ARG A 174 HOH A 420 SITE 3 AC1 15 HOH A 430 GLU C 58 ILE C 81 ASN C 163 SITE 4 AC1 15 ARG C 165 FAD C 301 SER D 83 SITE 1 AC2 14 ARG B 78 HIS B 79 ARG B 80 ILE B 81 SITE 2 AC2 14 ASN B 169 LEU B 173 ARG B 174 HOH B 408 SITE 3 AC2 14 HOH B 424 GLU D 58 ILE D 81 ASN D 163 SITE 4 AC2 14 ARG D 165 FAD D 301 SITE 1 AC3 14 GLU A 58 ILE A 81 ASN A 163 ARG A 165 SITE 2 AC3 14 FAD A 301 SER B 83 ARG C 78 HIS C 79 SITE 3 AC3 14 ARG C 80 ILE C 81 ASN C 169 LEU C 173 SITE 4 AC3 14 HOH C 402 HOH C 417 SITE 1 AC4 14 SER A 83 GLU B 58 ILE B 81 ASN B 163 SITE 2 AC4 14 ARG B 165 FAD B 301 ARG D 78 HIS D 79 SITE 3 AC4 14 ARG D 80 ILE D 81 ASN D 169 LEU D 173 SITE 4 AC4 14 HOH D 408 HOH D 413 SITE 1 AC5 10 GLU C 203 LEU C 206 LEU C 215 LYS C 216 SITE 2 AC5 10 GLN C 219 HIS D 43 GLU D 46 TYR D 47 SITE 3 AC5 10 LYS D 50 HIS D 51 CRYST1 53.990 116.640 141.380 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007073 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.960394 0.237306 -0.146045 73.20985 1 MTRIX2 2 0.255421 0.540260 -0.801797 103.08620 1 MTRIX3 2 -0.111369 -0.807344 -0.579476 220.43663 1 MTRIX1 3 0.958497 -0.242193 0.150417 -5.58037 1 MTRIX2 3 -0.240243 -0.970209 -0.031281 97.38580 1 MTRIX3 3 0.153512 -0.006154 -0.988128 223.46570 1 MTRIX1 4 -0.999835 -0.006015 -0.017141 70.38229 1 MTRIX2 4 -0.010654 -0.570105 0.821503 -25.79089 1 MTRIX3 4 -0.014714 0.821550 0.569947 14.33943 1