HEADER PROTEIN BINDING/SIGNALING PROTEIN 23-APR-13 4KAX TITLE CRYSTAL STRUCTURE OF THE GRP1 PH DOMAIN IN COMPLEX WITH ARF6-GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARF6 (RESIDUES 14-181); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYTOHESIN-3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: GRP1 PH DOMAIN (RESIDUES 247-399); COMPND 11 SYNONYM: ARF NUCLEOTIDE-BINDING SITE OPENER 3, PROTEIN ARNO3, GENERAL COMPND 12 RECEPTOR OF PHOSPHOINOSITIDES 1, GRP1, PH, SEC7 AND COILED-COIL COMPND 13 DOMAIN-CONTAINING PROTEIN 3; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARF6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CYTH3, ARNO3, GRP1, PSCD3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PH DOMAIN, PHOSPHOINOSITIDES, PROTEIN BINDING-SIGNALING PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.G.LAMBRIGHT,A.W.MALABY,B.VAN DEN BERG REVDAT 5 28-FEB-24 4KAX 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4KAX 1 REMARK REVDAT 3 11-SEP-13 4KAX 1 JRNL REVDAT 2 28-AUG-13 4KAX 1 JRNL REVDAT 1 14-AUG-13 4KAX 0 JRNL AUTH A.W.MALABY,B.VAN DEN BERG,D.G.LAMBRIGHT JRNL TITL STRUCTURAL BASIS FOR MEMBRANE RECRUITMENT AND ALLOSTERIC JRNL TITL 2 ACTIVATION OF CYTOHESIN FAMILY ARF GTPASE EXCHANGE FACTORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 14213 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23940353 JRNL DOI 10.1073/PNAS.1301883110 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2652 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3597 ; 1.142 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;37.827 ;23.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;11.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.029 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1967 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1521 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2467 ; 0.981 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 1.239 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1130 ; 2.095 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 MONOCHROMATOR WITH CRYOGENICALLY- REMARK 200 COOLED FIRST CRYSTAL AND REMARK 200 SAGITTALLY-BENT SECOND CRYSTAL REMARK 200 HORIZONTALLY-FOCUSING AT 3.3:1 REMARK 200 DEMAGNIFICATION REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, 20% PEG 4000, 0.2 M SODIUM REMARK 280 CITRATE. MICROSEEDING AND TCEP WERE NEEDED FOR LARGE CRYSTAL REMARK 280 GROWTH, PH 8.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.18550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.29750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.29750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 205.77825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.29750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.29750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.59275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.29750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.29750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 205.77825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.29750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.29750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.59275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 137.18550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 GLY B 245 REMARK 465 SER B 246 REMARK 465 PRO B 247 REMARK 465 PHE B 248 REMARK 465 LYS B 249 REMARK 465 ILE B 250 REMARK 465 PRO B 251 REMARK 465 GLU B 252 REMARK 465 ASP B 253 REMARK 465 ASP B 254 REMARK 465 LYS B 398 REMARK 465 LYS B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 382 135.83 -170.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 THR A 44 OG1 88.8 REMARK 620 3 GTP A 201 O3G 173.9 86.3 REMARK 620 4 GTP A 201 O2B 90.1 178.9 94.8 REMARK 620 5 HOH A 354 O 90.5 89.8 85.9 90.1 REMARK 620 6 HOH A 355 O 95.4 89.4 88.2 90.8 174.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 205 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 O REMARK 620 2 THR A 79 OG1 105.7 REMARK 620 3 HOH A 359 O 86.3 153.2 REMARK 620 4 HOH A 364 O 74.3 72.9 87.9 REMARK 620 5 GLY B 348 O 106.4 79.3 121.0 151.1 REMARK 620 6 HOH B1281 O 159.1 88.0 75.0 95.4 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4IP B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1104 DBREF 4KAX A 14 173 UNP P62330 ARF6_HUMAN 14 173 DBREF 4KAX B 247 399 UNP O43739 CYH3_HUMAN 247 400 SEQADV 4KAX HIS A 6 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS A 7 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS A 8 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS A 9 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS A 10 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS A 11 UNP P62330 EXPRESSION TAG SEQADV 4KAX GLY A 12 UNP P62330 EXPRESSION TAG SEQADV 4KAX SER A 13 UNP P62330 EXPRESSION TAG SEQADV 4KAX LEU A 67 UNP P62330 GLN 67 ENGINEERED MUTATION SEQADV 4KAX ASN A 174 UNP P62330 EXPRESSION TAG SEQADV 4KAX HIS B 239 UNP O43739 EXPRESSION TAG SEQADV 4KAX HIS B 240 UNP O43739 EXPRESSION TAG SEQADV 4KAX HIS B 241 UNP O43739 EXPRESSION TAG SEQADV 4KAX HIS B 242 UNP O43739 EXPRESSION TAG SEQADV 4KAX HIS B 243 UNP O43739 EXPRESSION TAG SEQADV 4KAX HIS B 244 UNP O43739 EXPRESSION TAG SEQADV 4KAX GLY B 245 UNP O43739 EXPRESSION TAG SEQADV 4KAX SER B 246 UNP O43739 EXPRESSION TAG SEQADV 4KAX B UNP O43739 GLY 275 DELETION SEQRES 1 A 169 HIS HIS HIS HIS HIS HIS GLY SER MET ARG ILE LEU MET SEQRES 2 A 169 LEU GLY LEU ASP ALA ALA GLY LYS THR THR ILE LEU TYR SEQRES 3 A 169 LYS LEU LYS LEU GLY GLN SER VAL THR THR ILE PRO THR SEQRES 4 A 169 VAL GLY PHE ASN VAL GLU THR VAL THR TYR LYS ASN VAL SEQRES 5 A 169 LYS PHE ASN VAL TRP ASP VAL GLY GLY LEU ASP LYS ILE SEQRES 6 A 169 ARG PRO LEU TRP ARG HIS TYR TYR THR GLY THR GLN GLY SEQRES 7 A 169 LEU ILE PHE VAL VAL ASP CYS ALA ASP ARG ASP ARG ILE SEQRES 8 A 169 ASP GLU ALA ARG GLN GLU LEU HIS ARG ILE ILE ASN ASP SEQRES 9 A 169 ARG GLU MET ARG ASP ALA ILE ILE LEU ILE PHE ALA ASN SEQRES 10 A 169 LYS GLN ASP LEU PRO ASP ALA MET LYS PRO HIS GLU ILE SEQRES 11 A 169 GLN GLU LYS LEU GLY LEU THR ARG ILE ARG ASP ARG ASN SEQRES 12 A 169 TRP TYR VAL GLN PRO SER CYS ALA THR SER GLY ASP GLY SEQRES 13 A 169 LEU TYR GLU GLY LEU THR TRP LEU THR SER ASN TYR ASN SEQRES 1 B 161 HIS HIS HIS HIS HIS HIS GLY SER PRO PHE LYS ILE PRO SEQRES 2 B 161 GLU ASP ASP GLY ASN ASP LEU THR HIS THR PHE PHE ASN SEQRES 3 B 161 PRO ASP ARG GLU GLY TRP LEU LEU LYS LEU GLY GLY ARG SEQRES 4 B 161 VAL LYS THR TRP LYS ARG ARG TRP PHE ILE LEU THR ASP SEQRES 5 B 161 ASN CYS LEU TYR TYR PHE GLU TYR THR THR ASP LYS GLU SEQRES 6 B 161 PRO ARG GLY ILE ILE PRO LEU GLU ASN LEU SER ILE ARG SEQRES 7 B 161 GLU VAL GLU ASP PRO ARG LYS PRO ASN CYS PHE GLU LEU SEQRES 8 B 161 TYR ASN PRO SER HIS LYS GLY GLN VAL ILE LYS ALA CYS SEQRES 9 B 161 LYS THR GLU ALA ASP GLY ARG VAL VAL GLU GLY ASN HIS SEQRES 10 B 161 VAL VAL TYR ARG ILE SER ALA PRO SER PRO GLU GLU LYS SEQRES 11 B 161 GLU GLU TRP MET LYS SER ILE LYS ALA SER ILE SER ARG SEQRES 12 B 161 ASP PRO PHE TYR ASP MET LEU ALA THR ARG LYS ARG ARG SEQRES 13 B 161 ILE ALA ASN LYS LYS HET GTP A 201 32 HET MG A 202 1 HET CIT A 203 13 HET GOL A 204 6 HET K A 205 1 HET 4IP B1101 28 HET GOL B1102 6 HET GOL B1103 6 HET GOL B1104 6 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETNAM 4IP INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 MG MG 2+ FORMUL 5 CIT C6 H8 O7 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 K K 1+ FORMUL 8 4IP C6 H16 O18 P4 FORMUL 12 HOH *426(H2 O) HELIX 1 1 GLY A 25 GLY A 36 1 12 HELIX 2 2 LEU A 67 TYR A 78 5 12 HELIX 3 3 ASP A 92 ASP A 94 5 3 HELIX 4 4 ARG A 95 ASN A 108 1 14 HELIX 5 5 ASP A 109 ARG A 113 5 5 HELIX 6 6 LYS A 131 LEU A 139 1 9 HELIX 7 7 GLY A 161 TYR A 173 1 13 HELIX 8 8 LEU B 258 PHE B 263 5 6 HELIX 9 9 SER B 364 ILE B 379 1 16 HELIX 10 10 ASP B 382 ALA B 396 1 15 SHEET 1 A 6 PHE A 47 TYR A 54 0 SHEET 2 A 6 VAL A 57 VAL A 64 -1 O PHE A 59 N VAL A 52 SHEET 3 A 6 SER A 13 LEU A 19 1 N MET A 18 O TRP A 62 SHEET 4 A 6 GLY A 83 ASP A 89 1 O ILE A 85 N LEU A 17 SHEET 5 A 6 ILE A 116 ASN A 122 1 O LEU A 118 N LEU A 84 SHEET 6 A 6 TRP A 149 PRO A 153 1 O GLN A 152 N ILE A 119 SHEET 1 B 9 SER B 314 VAL B 318 0 SHEET 2 B 9 CYS B 326 TYR B 330 -1 O TYR B 330 N SER B 314 SHEET 3 B 9 TYR B 358 SER B 361 -1 O ILE B 360 N PHE B 327 SHEET 4 B 9 ARG B 267 LEU B 274 -1 N LEU B 272 O SER B 361 SHEET 5 B 9 TRP B 281 THR B 289 -1 O ARG B 284 N LEU B 271 SHEET 6 B 9 CYS B 292 PHE B 296 -1 O TYR B 294 N ILE B 287 SHEET 7 B 9 GLY B 306 PRO B 309 -1 O ILE B 308 N LEU B 293 SHEET 8 B 9 CYS B 342 THR B 344 -1 O CYS B 342 N ILE B 307 SHEET 9 B 9 VAL B 350 GLU B 352 -1 O VAL B 351 N LYS B 343 LINK OG1 THR A 27 MG MG A 202 1555 1555 2.02 LINK OG1 THR A 44 MG MG A 202 1555 1555 2.19 LINK O HIS A 76 K K A 205 1555 1555 2.86 LINK OG1 THR A 79 K K A 205 1555 1555 2.87 LINK O3G GTP A 201 MG MG A 202 1555 1555 1.98 LINK O2B GTP A 201 MG MG A 202 1555 1555 2.08 LINK MG MG A 202 O HOH A 354 1555 1555 2.02 LINK MG MG A 202 O HOH A 355 1555 1555 2.06 LINK K K A 205 O HOH A 359 1555 1555 2.78 LINK K K A 205 O HOH A 364 1555 1555 2.70 LINK K K A 205 O GLY B 348 1555 1555 2.65 LINK K K A 205 O HOH B1281 1555 1555 2.76 SITE 1 AC1 28 ASP A 22 ALA A 23 ALA A 24 GLY A 25 SITE 2 AC1 28 LYS A 26 THR A 27 THR A 28 THR A 41 SITE 3 AC1 28 THR A 44 GLY A 66 ASN A 122 LYS A 123 SITE 4 AC1 28 ASP A 125 LEU A 126 CYS A 155 ALA A 156 SITE 5 AC1 28 MG A 202 HOH A 311 HOH A 314 HOH A 323 SITE 6 AC1 28 HOH A 329 HOH A 340 HOH A 342 HOH A 353 SITE 7 AC1 28 HOH A 354 HOH A 355 HOH A 388 HOH A 414 SITE 1 AC2 5 THR A 27 THR A 44 GTP A 201 HOH A 354 SITE 2 AC2 5 HOH A 355 SITE 1 AC3 12 LYS A 34 THR A 51 THR A 53 LYS A 55 SITE 2 AC3 12 LYS A 58 GOL A 204 HOH A 349 HOH A 371 SITE 3 AC3 12 HOH A 389 HOH A 420 ALA B 396 ASN B 397 SITE 1 AC4 9 LEU A 33 LYS A 34 VAL A 52 THR A 53 SITE 2 AC4 9 LYS A 55 TYR A 163 CIT A 203 HOH A 341 SITE 3 AC4 9 HOH A 344 SITE 1 AC5 6 HIS A 76 THR A 79 HOH A 359 HOH A 364 SITE 2 AC5 6 GLY B 348 HOH B1281 SITE 1 AC6 25 LYS B 273 GLY B 275 GLY B 276 ARG B 277 SITE 2 AC6 25 VAL B 278 THR B 280 LYS B 282 ARG B 284 SITE 3 AC6 25 TYR B 295 ARG B 305 LYS B 343 ASN B 354 SITE 4 AC6 25 HIS B 355 HOH B1201 HOH B1211 HOH B1215 SITE 5 AC6 25 HOH B1221 HOH B1226 HOH B1247 HOH B1252 SITE 6 AC6 25 HOH B1263 HOH B1293 HOH B1301 HOH B1305 SITE 7 AC6 25 HOH B1356 SITE 1 AC7 8 ASP A 94 TRP B 281 ASP B 320 ARG B 322 SITE 2 AC7 8 ARG B 359 HOH B1265 HOH B1272 HOH B1275 SITE 1 AC8 6 LYS A 69 PHE B 263 ASN B 264 ASP B 266 SITE 2 AC8 6 THR B 289 ASP B 290 SITE 1 AC9 8 THR B 259 TRP B 285 ILE B 287 THR B 299 SITE 2 AC9 8 ASP B 301 HOH B1358 HOH B1374 HOH B1387 CRYST1 56.595 56.595 274.371 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003645 0.00000