HEADER TRANSFERASE 23-APR-13 4KAY TITLE STRUCTURE OF THE SOLUBLE DOMAIN OF LIPOOLIGOSACCHARIDE TITLE 2 PHOSPHOETHANOLAMINE TRANSFERASE A FROM NEISSERIA MENINGITIDIS - TITLE 3 COMPLEX WITH ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: YHBX/YHJW/YIJP/YJDB FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PERIPLASMIC SOLUBLE DOMAIN (UNP RESIDUES 210-544); COMPND 5 EC: 3.1.3.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: NMB; SOURCE 5 GENE: NMB1638; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCMK527 KEYWDS ENDOTOXIN BIOSYNTHESIS, LPTA, PHOSPHOETHANOLAMINE TRANSFERASE, KEYWDS 2 POLYMYXIN RESISTANCE, HYDROLASE, PHOSPHOTRANSFERASE KEYWDS 3 PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VRIELINK,C.WANTY,A.ANANDAN REVDAT 4 20-SEP-23 4KAY 1 REMARK LINK REVDAT 3 15-NOV-17 4KAY 1 REMARK REVDAT 2 23-OCT-13 4KAY 1 JRNL REVDAT 1 17-JUL-13 4KAY 0 JRNL AUTH C.WANTY,A.ANANDAN,S.PIEK,J.WALSHE,J.GANGULY,R.W.CARLSON, JRNL AUTH 2 K.A.STUBBS,C.M.KAHLER,A.VRIELINK JRNL TITL THE STRUCTURE OF THE NEISSERIAL LIPOOLIGOSACCHARIDE JRNL TITL 2 PHOSPHOETHANOLAMINE TRANSFERASE A (LPTA) REQUIRED FOR JRNL TITL 3 RESISTANCE TO POLYMYXIN. JRNL REF J.MOL.BIOL. V. 425 3389 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23810904 JRNL DOI 10.1016/J.JMB.2013.06.029 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 66393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8000 - 5.1085 0.95 2722 160 0.1649 0.1530 REMARK 3 2 5.1085 - 4.0663 0.96 2692 127 0.1256 0.1477 REMARK 3 3 4.0663 - 3.5557 0.98 2667 139 0.1367 0.1746 REMARK 3 4 3.5557 - 3.2321 0.98 2689 129 0.1486 0.1956 REMARK 3 5 3.2321 - 3.0013 0.98 2687 117 0.1487 0.1863 REMARK 3 6 3.0013 - 2.8249 0.99 2678 113 0.1435 0.1881 REMARK 3 7 2.8249 - 2.6838 0.99 2652 144 0.1472 0.1859 REMARK 3 8 2.6838 - 2.5672 0.99 2624 158 0.1435 0.2026 REMARK 3 9 2.5672 - 2.4686 0.99 2688 140 0.1416 0.1876 REMARK 3 10 2.4686 - 2.3835 0.99 2656 134 0.1397 0.1997 REMARK 3 11 2.3835 - 2.3091 0.99 2666 134 0.1401 0.2039 REMARK 3 12 2.3091 - 2.2432 0.99 2626 154 0.1355 0.1779 REMARK 3 13 2.2432 - 2.1842 1.00 2648 146 0.1350 0.1593 REMARK 3 14 2.1842 - 2.1310 1.00 2653 149 0.1445 0.1830 REMARK 3 15 2.1310 - 2.0826 0.99 2641 140 0.1510 0.2172 REMARK 3 16 2.0826 - 2.0383 1.00 2681 125 0.1557 0.1979 REMARK 3 17 2.0383 - 1.9976 0.99 2649 149 0.1597 0.2139 REMARK 3 18 1.9976 - 1.9599 1.00 2620 167 0.1677 0.2241 REMARK 3 19 1.9599 - 1.9250 1.00 2630 130 0.1670 0.1978 REMARK 3 20 1.9250 - 1.8923 1.00 2653 138 0.1721 0.2092 REMARK 3 21 1.8923 - 1.8618 1.00 2638 154 0.1723 0.2270 REMARK 3 22 1.8618 - 1.8332 0.95 2498 167 0.1939 0.2837 REMARK 3 23 1.8332 - 1.8063 0.92 2441 120 0.1954 0.2546 REMARK 3 24 1.8063 - 1.7809 0.85 2233 127 0.1951 0.2541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.06920 REMARK 3 B22 (A**2) : 10.44330 REMARK 3 B33 (A**2) : -5.37410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5675 REMARK 3 ANGLE : 1.523 7747 REMARK 3 CHIRALITY : 0.094 856 REMARK 3 PLANARITY : 0.008 1025 REMARK 3 DIHEDRAL : 14.744 2165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 211:279 OR RESSEQ REMARK 3 281:543 ) AND (NOT ELEMENT H) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 211:279 OR RESSEQ REMARK 3 281:543 ) AND (NOT ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 2646 REMARK 3 RMSD : 0.135 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KAV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23-26% PEG 8K, 100 MM AMMONIUM REMARK 280 SULFATE, 100 MM HEPES, 15 MM N-DODECYL-N,N-DIMETHYLAMINE- N- REMARK 280 OXIDE (DDAO), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.53400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.58800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.25850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.58800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.53400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.25850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 210 REMARK 465 ARG A 544 REMARK 465 SER B 210 REMARK 465 ARG B 544 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 349 HH22 ARG B 490 2455 1.18 REMARK 500 HH22 ARG A 349 HH21 ARG B 490 2455 1.21 REMARK 500 NH1 ARG A 349 HH22 ARG B 490 2455 1.49 REMARK 500 NH2 ARG A 349 HH21 ARG B 490 2455 1.58 REMARK 500 OE2 GLU A 266 O HOH B 1018 2555 1.78 REMARK 500 NH1 ARG A 349 NH2 ARG B 490 2455 2.05 REMARK 500 O HOH A 1128 O HOH B 1018 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 490 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET B 462 C - N - CA ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 241 -14.77 78.20 REMARK 500 SER A 325 -8.95 79.39 REMARK 500 ASP A 403 44.84 -100.75 REMARK 500 HIS A 453 171.25 177.01 REMARK 500 LEU A 464 -151.82 58.82 REMARK 500 HIS A 465 -147.97 -132.13 REMARK 500 THR B 241 -14.33 76.39 REMARK 500 SER B 325 -10.27 80.39 REMARK 500 ASP B 403 45.03 -99.88 REMARK 500 HIS B 453 171.00 177.82 REMARK 500 LEU B 464 -145.72 55.06 REMARK 500 HIS B 465 -150.12 -135.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 240 OE2 REMARK 620 2 GLU A 240 OE1 59.9 REMARK 620 3 TPO A 280 OG1 134.1 88.6 REMARK 620 4 ASP A 452 OD2 109.1 86.5 100.5 REMARK 620 5 HIS A 453 NE2 96.5 155.9 113.4 98.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 280 O2P REMARK 620 2 TPO A 280 O3P 70.7 REMARK 620 3 HIS A 383 NE2 74.4 143.9 REMARK 620 4 HIS A 465 NE2 109.3 80.0 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 240 OE2 REMARK 620 2 GLU B 240 OE1 63.4 REMARK 620 3 TPO B 280 OG1 136.5 88.3 REMARK 620 4 ASP B 452 OD2 108.8 83.6 99.1 REMARK 620 5 HIS B 453 NE2 94.2 156.3 114.6 97.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO B 280 O2P REMARK 620 2 TPO B 280 O3P 72.0 REMARK 620 3 HIS B 383 NE2 72.8 143.4 REMARK 620 4 HIS B 465 NE2 103.3 80.4 117.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KAV RELATED DB: PDB DBREF 4KAY A 210 544 UNP Q7DD94 Q7DD94_NEIMB 210 544 DBREF 4KAY B 210 544 UNP Q7DD94 Q7DD94_NEIMB 210 544 SEQRES 1 A 335 SER ASN ILE PRO TYR THR GLN LEU ASP MET ALA VAL VAL SEQRES 2 A 335 GLN ASN ARG PRO ALA GLY SER LEU ARG ARG PHE VAL VAL SEQRES 3 A 335 LEU VAL VAL GLY GLU THR THR ARG ALA ALA ASN TRP GLY SEQRES 4 A 335 LEU ASN GLY TYR SER ARG GLN THR THR PRO LEU LEU ALA SEQRES 5 A 335 ALA ARG GLY ASP GLU ILE VAL ASN PHE PRO GLN VAL ARG SEQRES 6 A 335 SER CYS GLY THR SER TPO ALA HIS SER LEU PRO CYS MET SEQRES 7 A 335 PHE SER THR PHE ASP ARG THR ASP TYR ASP GLU ILE LYS SEQRES 8 A 335 ALA GLU HIS GLN ASP ASN LEU LEU ASP ILE VAL GLN ARG SEQRES 9 A 335 ALA GLY VAL GLU VAL THR TRP LEU GLU ASN ASP SER GLY SEQRES 10 A 335 CYS LYS GLY VAL CYS GLY LYS VAL PRO ASN THR ASP VAL SEQRES 11 A 335 THR SER LEU ASN LEU PRO GLU TYR CYS ARG ASN GLY GLU SEQRES 12 A 335 CYS LEU ASP ASN ILE LEU LEU THR LYS PHE ASP GLU VAL SEQRES 13 A 335 LEU ASN LYS ASN ASP LYS ASP ALA VAL LEU ILE LEU HIS SEQRES 14 A 335 THR ILE GLY SER HIS GLY PRO THR TYR TYR GLU ARG TYR SEQRES 15 A 335 THR GLU ALA GLU ARG LYS PHE THR PRO THR CYS ASP THR SEQRES 16 A 335 ASN GLU ILE ASN LYS CYS THR ARG ALA THR LEU VAL ASN SEQRES 17 A 335 THR TYR ASP ASN THR VAL LEU TYR VAL ASP GLN PHE ILE SEQRES 18 A 335 ASP LYS VAL ILE ARG LYS LEU GLU ASN ARG ASP ASP LEU SEQRES 19 A 335 GLU SER VAL VAL HIS TYR VAL SER ASP HIS GLY GLU SER SEQRES 20 A 335 LEU GLY GLU ASN GLY MET TYR LEU HIS ALA ALA PRO TYR SEQRES 21 A 335 ALA ILE ALA PRO SER GLY GLN THR HIS ILE PRO MET VAL SEQRES 22 A 335 MET TRP PHE SER LYS ALA PHE ARG GLN HIS GLY GLY ILE SEQRES 23 A 335 ASP PHE GLN CYS LEU LYS GLN LYS ALA ALA GLU ASN GLU SEQRES 24 A 335 TYR SER HIS ASP HIS TYR PHE SER THR VAL LEU GLY LEU SEQRES 25 A 335 MET ASP ILE SER ASN SER GLN THR TYR ARG LYS GLU MET SEQRES 26 A 335 ASP ILE LEU ALA ALA CYS ARG ARG PRO ARG SEQRES 1 B 335 SER ASN ILE PRO TYR THR GLN LEU ASP MET ALA VAL VAL SEQRES 2 B 335 GLN ASN ARG PRO ALA GLY SER LEU ARG ARG PHE VAL VAL SEQRES 3 B 335 LEU VAL VAL GLY GLU THR THR ARG ALA ALA ASN TRP GLY SEQRES 4 B 335 LEU ASN GLY TYR SER ARG GLN THR THR PRO LEU LEU ALA SEQRES 5 B 335 ALA ARG GLY ASP GLU ILE VAL ASN PHE PRO GLN VAL ARG SEQRES 6 B 335 SER CYS GLY THR SER TPO ALA HIS SER LEU PRO CYS MET SEQRES 7 B 335 PHE SER THR PHE ASP ARG THR ASP TYR ASP GLU ILE LYS SEQRES 8 B 335 ALA GLU HIS GLN ASP ASN LEU LEU ASP ILE VAL GLN ARG SEQRES 9 B 335 ALA GLY VAL GLU VAL THR TRP LEU GLU ASN ASP SER GLY SEQRES 10 B 335 CYS LYS GLY VAL CYS GLY LYS VAL PRO ASN THR ASP VAL SEQRES 11 B 335 THR SER LEU ASN LEU PRO GLU TYR CYS ARG ASN GLY GLU SEQRES 12 B 335 CYS LEU ASP ASN ILE LEU LEU THR LYS PHE ASP GLU VAL SEQRES 13 B 335 LEU ASN LYS ASN ASP LYS ASP ALA VAL LEU ILE LEU HIS SEQRES 14 B 335 THR ILE GLY SER HIS GLY PRO THR TYR TYR GLU ARG TYR SEQRES 15 B 335 THR GLU ALA GLU ARG LYS PHE THR PRO THR CYS ASP THR SEQRES 16 B 335 ASN GLU ILE ASN LYS CYS THR ARG ALA THR LEU VAL ASN SEQRES 17 B 335 THR TYR ASP ASN THR VAL LEU TYR VAL ASP GLN PHE ILE SEQRES 18 B 335 ASP LYS VAL ILE ARG LYS LEU GLU ASN ARG ASP ASP LEU SEQRES 19 B 335 GLU SER VAL VAL HIS TYR VAL SER ASP HIS GLY GLU SER SEQRES 20 B 335 LEU GLY GLU ASN GLY MET TYR LEU HIS ALA ALA PRO TYR SEQRES 21 B 335 ALA ILE ALA PRO SER GLY GLN THR HIS ILE PRO MET VAL SEQRES 22 B 335 MET TRP PHE SER LYS ALA PHE ARG GLN HIS GLY GLY ILE SEQRES 23 B 335 ASP PHE GLN CYS LEU LYS GLN LYS ALA ALA GLU ASN GLU SEQRES 24 B 335 TYR SER HIS ASP HIS TYR PHE SER THR VAL LEU GLY LEU SEQRES 25 B 335 MET ASP ILE SER ASN SER GLN THR TYR ARG LYS GLU MET SEQRES 26 B 335 ASP ILE LEU ALA ALA CYS ARG ARG PRO ARG MODRES 4KAY TPO A 280 THR PHOSPHOTHREONINE MODRES 4KAY TPO B 280 THR PHOSPHOTHREONINE HET TPO A 280 17 HET TPO B 280 17 HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET PO4 A 604 5 HET ZN B 601 1 HET ZN B 602 1 HET ZN B 603 1 HET PO4 B 604 5 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 ZN 6(ZN 2+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 11 HOH *1116(H2 O) HELIX 1 1 ARG A 243 GLY A 251 5 9 HELIX 2 2 THR A 257 ARG A 263 1 7 HELIX 3 3 SER A 279 PHE A 288 1 10 HELIX 4 4 ASP A 292 TYR A 296 5 5 HELIX 5 5 ASP A 297 HIS A 303 1 7 HELIX 6 6 ASN A 306 ALA A 314 1 9 HELIX 7 7 THR A 340 ASN A 343 5 4 HELIX 8 8 ASP A 355 THR A 360 5 6 HELIX 9 9 LYS A 361 ASN A 367 1 7 HELIX 10 10 THR A 386 TYR A 391 5 6 HELIX 11 11 THR A 392 ARG A 396 5 5 HELIX 12 12 GLU A 406 CYS A 410 5 5 HELIX 13 13 THR A 411 GLU A 438 1 28 HELIX 14 14 GLU A 459 GLY A 461 5 3 HELIX 15 15 PRO A 468 ALA A 472 5 5 HELIX 16 16 PRO A 473 HIS A 478 1 6 HELIX 17 17 SER A 486 GLY A 493 1 8 HELIX 18 18 ASP A 496 ASN A 507 1 12 HELIX 19 19 HIS A 513 MET A 522 1 10 HELIX 20 20 ARG A 531 ASP A 535 5 5 HELIX 21 21 LEU A 537 ARG A 541 5 5 HELIX 22 22 ARG B 243 GLY B 251 5 9 HELIX 23 23 THR B 257 ARG B 263 1 7 HELIX 24 24 SER B 279 PHE B 288 1 10 HELIX 25 25 ASP B 292 TYR B 296 5 5 HELIX 26 26 ASP B 297 HIS B 303 1 7 HELIX 27 27 ASN B 306 ALA B 314 1 9 HELIX 28 28 THR B 340 ASN B 343 5 4 HELIX 29 29 ASP B 355 THR B 360 5 6 HELIX 30 30 LYS B 361 ASN B 367 1 7 HELIX 31 31 THR B 386 TYR B 391 5 6 HELIX 32 32 THR B 392 ARG B 396 5 5 HELIX 33 33 GLU B 406 CYS B 410 5 5 HELIX 34 34 THR B 411 LYS B 436 1 26 HELIX 35 35 GLU B 459 GLY B 461 5 3 HELIX 36 36 PRO B 468 ALA B 472 5 5 HELIX 37 37 PRO B 473 HIS B 478 1 6 HELIX 38 38 SER B 486 GLY B 493 1 8 HELIX 39 39 ASP B 496 ASN B 507 1 12 HELIX 40 40 HIS B 513 MET B 522 1 10 HELIX 41 41 ARG B 531 ASP B 535 5 5 HELIX 42 42 LEU B 537 ARG B 541 5 5 SHEET 1 A 2 VAL A 222 GLN A 223 0 SHEET 2 A 2 ILE A 524 SER A 525 -1 O SER A 525 N VAL A 222 SHEET 1 B 7 ILE A 267 ASN A 269 0 SHEET 2 B 7 MET A 481 PHE A 485 -1 O MET A 483 N VAL A 268 SHEET 3 B 7 LEU A 443 VAL A 450 -1 N TYR A 449 O VAL A 482 SHEET 4 B 7 ARG A 231 VAL A 238 1 N VAL A 237 O HIS A 448 SHEET 5 B 7 ALA A 373 HIS A 378 1 O ALA A 373 N VAL A 234 SHEET 6 B 7 GLU A 317 GLU A 322 1 N THR A 319 O ILE A 376 SHEET 7 B 7 ASN A 336 ASP A 338 1 O THR A 337 N GLU A 322 SHEET 1 C 2 VAL A 273 ARG A 274 0 SHEET 2 C 2 TYR A 509 SER A 510 1 O TYR A 509 N ARG A 274 SHEET 1 D 2 CYS A 348 ARG A 349 0 SHEET 2 D 2 GLU A 352 CYS A 353 -1 O GLU A 352 N ARG A 349 SHEET 1 E 2 SER A 456 LEU A 457 0 SHEET 2 E 2 TYR A 463 LEU A 464 -1 O LEU A 464 N SER A 456 SHEET 1 F 2 VAL B 222 GLN B 223 0 SHEET 2 F 2 ILE B 524 SER B 525 -1 O SER B 525 N VAL B 222 SHEET 1 G 7 ILE B 267 ASN B 269 0 SHEET 2 G 7 MET B 481 PHE B 485 -1 O MET B 483 N VAL B 268 SHEET 3 G 7 LEU B 443 VAL B 450 -1 N TYR B 449 O VAL B 482 SHEET 4 G 7 ARG B 231 VAL B 238 1 N VAL B 237 O HIS B 448 SHEET 5 G 7 ALA B 373 HIS B 378 1 O ALA B 373 N VAL B 234 SHEET 6 G 7 GLU B 317 GLU B 322 1 N THR B 319 O ILE B 376 SHEET 7 G 7 ASN B 336 ASP B 338 1 O THR B 337 N GLU B 322 SHEET 1 H 2 VAL B 273 ARG B 274 0 SHEET 2 H 2 TYR B 509 SER B 510 1 O TYR B 509 N ARG B 274 SHEET 1 I 2 CYS B 348 ARG B 349 0 SHEET 2 I 2 GLU B 352 CYS B 353 -1 O GLU B 352 N ARG B 349 SHEET 1 J 2 SER B 456 LEU B 457 0 SHEET 2 J 2 TYR B 463 LEU B 464 -1 O LEU B 464 N SER B 456 SSBOND 1 CYS A 276 CYS A 286 1555 1555 2.05 SSBOND 2 CYS A 327 CYS A 331 1555 1555 2.03 SSBOND 3 CYS A 348 CYS A 353 1555 1555 2.05 SSBOND 4 CYS A 402 CYS A 410 1555 1555 2.06 SSBOND 5 CYS A 499 CYS A 540 1555 1555 2.05 SSBOND 6 CYS B 276 CYS B 286 1555 1555 2.06 SSBOND 7 CYS B 327 CYS B 331 1555 1555 2.04 SSBOND 8 CYS B 348 CYS B 353 1555 1555 2.05 SSBOND 9 CYS B 402 CYS B 410 1555 1555 2.05 SSBOND 10 CYS B 499 CYS B 540 1555 1555 2.09 LINK C SER A 279 N TPO A 280 1555 1555 1.32 LINK C TPO A 280 N ALA A 281 1555 1555 1.33 LINK C SER B 279 N TPO B 280 1555 1555 1.32 LINK C TPO B 280 N ALA B 281 1555 1555 1.33 LINK OE2 GLU A 240 ZN ZN A 601 1555 1555 1.85 LINK OE1 GLU A 240 ZN ZN A 601 1555 1555 2.43 LINK OG1 TPO A 280 ZN ZN A 601 1555 1555 1.98 LINK O2P TPO A 280 ZN ZN A 602 1555 1555 1.95 LINK O3P TPO A 280 ZN ZN A 602 1555 1555 2.52 LINK NE2 HIS A 303 ZN ZN A 603 1555 1555 2.16 LINK NE2 HIS A 383 ZN ZN A 602 1555 1555 2.22 LINK OD2 ASP A 452 ZN ZN A 601 1555 1555 1.98 LINK NE2 HIS A 453 ZN ZN A 601 1555 1555 2.00 LINK NE2 HIS A 465 ZN ZN A 602 1555 1555 2.34 LINK OE2 GLU B 240 ZN ZN B 601 1555 1555 1.80 LINK OE1 GLU B 240 ZN ZN B 601 1555 1555 2.31 LINK OG1 TPO B 280 ZN ZN B 601 1555 1555 1.95 LINK O2P TPO B 280 ZN ZN B 602 1555 1555 1.98 LINK O3P TPO B 280 ZN ZN B 602 1555 1555 2.49 LINK NE2 HIS B 303 ZN ZN B 603 1555 1555 2.19 LINK NE2 HIS B 383 ZN ZN B 602 1555 1555 2.22 LINK OD2 ASP B 452 ZN ZN B 601 1555 1555 1.99 LINK NE2 HIS B 453 ZN ZN B 601 1555 1555 2.00 LINK NE2 HIS B 465 ZN ZN B 602 1555 1555 2.47 CISPEP 1 GLY A 384 PRO A 385 0 2.98 CISPEP 2 THR A 399 PRO A 400 0 0.68 CISPEP 3 GLY B 384 PRO B 385 0 4.33 CISPEP 4 THR B 399 PRO B 400 0 0.70 SITE 1 AC1 4 GLU A 240 TPO A 280 ASP A 452 HIS A 453 SITE 1 AC2 3 TPO A 280 HIS A 383 HIS A 465 SITE 1 AC3 1 HIS A 303 SITE 1 AC4 4 THR A 411 ARG A 412 HOH A 749 HOH A1178 SITE 1 AC5 4 GLU B 240 TPO B 280 ASP B 452 HIS B 453 SITE 1 AC6 3 TPO B 280 HIS B 383 HIS B 465 SITE 1 AC7 1 HIS B 303 SITE 1 AC8 3 THR B 411 ARG B 412 HOH B 775 CRYST1 85.068 90.517 91.176 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010968 0.00000