HEADER TRANSLATION 23-APR-13 4KB4 TITLE CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR MUTANT R31A FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-RECYCLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RRF, RIBOSOME-RELEASING FACTOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FRR, MT2949, MTCY274.13C, RV2882C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS RIBOSOME RECYCLING, POST-TERMINATION COMPLEX, TRANSLATION, ELONGATION KEYWDS 2 FACTOR G, BACTERIAL CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR M.SELVARAJ,A.GOVINDAN,A.SESHADRI,B.DUBEY,U.VARSHNEY,M.VIJAYAN REVDAT 3 08-NOV-23 4KB4 1 REMARK SEQADV LINK REVDAT 2 09-OCT-19 4KB4 1 JRNL REVDAT 1 12-MAR-14 4KB4 0 JRNL AUTH M.SELVARAJ,A.GOVINDAN,A.SESHADRI,B.DUBEY,U.VARSHNEY, JRNL AUTH 2 M.VIJAYAN JRNL TITL MOLECULAR FLEXIBILITY OF MYCOBACTERIUM TUBERCULOSIS RIBOSOME JRNL TITL 2 RECYCLING FACTOR AND ITS FUNCTIONAL CONSEQUENCES: AN JRNL TITL 3 EXPLORATION INVOLVING MUTANTS. JRNL REF J.BIOSCI. V. 38 845 2013 JRNL REFN ISSN 0250-4774 JRNL PMID 24296887 JRNL DOI 10.1007/S12038-013-9381-0 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -1.60000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1445 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1442 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1948 ; 1.697 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3312 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 5.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;38.180 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 273 ;21.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1633 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5664 -9.1549 7.6014 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0283 REMARK 3 T33: 0.0553 T12: -0.0036 REMARK 3 T13: -0.0091 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 15.3849 L22: 3.0752 REMARK 3 L33: 23.3221 L12: 1.4180 REMARK 3 L13: -16.7722 L23: -3.0610 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: -0.0344 S13: 0.1493 REMARK 3 S21: 0.0248 S22: 0.0226 S23: 0.0592 REMARK 3 S31: -0.3862 S32: -0.2694 S33: -0.1127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3635 -5.6905 19.2679 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.6198 REMARK 3 T33: 0.1851 T12: 0.1570 REMARK 3 T13: -0.0919 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 7.2705 L22: 8.1242 REMARK 3 L33: 6.2649 L12: -5.1593 REMARK 3 L13: 0.7691 L23: -1.9219 REMARK 3 S TENSOR REMARK 3 S11: -0.7791 S12: -1.4070 S13: 0.0944 REMARK 3 S21: 1.3268 S22: 0.8496 S23: -0.8305 REMARK 3 S31: -0.0681 S32: 0.5314 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0434 -18.9475 7.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.0847 REMARK 3 T33: 0.0792 T12: -0.0155 REMARK 3 T13: 0.0409 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 7.4346 L22: 1.7745 REMARK 3 L33: 18.3772 L12: 0.5268 REMARK 3 L13: -9.2048 L23: -1.6223 REMARK 3 S TENSOR REMARK 3 S11: -0.3211 S12: -0.0135 S13: -0.2438 REMARK 3 S21: -0.0182 S22: 0.0327 S23: 0.2010 REMARK 3 S31: 0.5655 S32: -0.7275 S33: 0.2883 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9838 -15.9012 11.1686 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0723 REMARK 3 T33: 0.0193 T12: -0.0059 REMARK 3 T13: -0.0159 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 9.2466 L22: 2.6196 REMARK 3 L33: 17.9880 L12: -1.0058 REMARK 3 L13: -10.3460 L23: 0.5592 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.4954 S13: 0.1737 REMARK 3 S21: 0.0537 S22: 0.1033 S23: -0.1094 REMARK 3 S31: -0.0485 S32: 0.2326 S33: -0.1652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.514 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11114 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 60.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WQG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% POLYETHYLENE GLYCOL 4000, 20MM TRIS REMARK 280 -HCL, 0.6MM CADMIUM ACETATE, 5% POLYETHYLENE GLYCOL 400, PH 7.8, REMARK 280 UNDER OIL IN MICROBATCH PLATES, TEMPERATURE 298KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.60000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 THR A 29 OG1 CG2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 PRO A 103 CG CD REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 103 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 96 73.41 -160.90 REMARK 500 LEU A 97 136.22 143.49 REMARK 500 GLN A 104 12.40 -61.44 REMARK 500 LEU A 105 -109.90 93.06 REMARK 500 THR A 106 138.76 105.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 136 SD REMARK 620 2 HIS A 140 NE2 87.3 REMARK 620 3 GLU A 157 OE1 92.2 120.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 161 OD2 52.7 REMARK 620 3 HIS A 165 NE2 101.6 94.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WQG RELATED DB: PDB REMARK 900 RELATED ID: 1WQF RELATED DB: PDB REMARK 900 RELATED ID: 1WQH RELATED DB: PDB REMARK 900 RELATED ID: 4KAW RELATED DB: PDB REMARK 900 RELATED ID: 4KB2 RELATED DB: PDB REMARK 900 RELATED ID: 4KC6 RELATED DB: PDB REMARK 900 RELATED ID: 4KDD RELATED DB: PDB DBREF 4KB4 A 1 185 UNP P66734 RRF_MYCTU 1 185 SEQADV 4KB4 ALA A 31 UNP P66734 ARG 31 ENGINEERED MUTATION SEQRES 1 A 185 MET ILE ASP GLU ALA LEU PHE ASP ALA GLU GLU LYS MET SEQRES 2 A 185 GLU LYS ALA VAL ALA VAL ALA ARG ASP ASP LEU SER THR SEQRES 3 A 185 ILE ARG THR GLY ALA ALA ASN PRO GLY MET PHE SER ARG SEQRES 4 A 185 ILE THR ILE ASP TYR TYR GLY ALA ALA THR PRO ILE THR SEQRES 5 A 185 GLN LEU ALA SER ILE ASN VAL PRO GLU ALA ARG LEU VAL SEQRES 6 A 185 VAL ILE LYS PRO TYR GLU ALA ASN GLN LEU ARG ALA ILE SEQRES 7 A 185 GLU THR ALA ILE ARG ASN SER ASP LEU GLY VAL ASN PRO SEQRES 8 A 185 THR ASN ASP GLY ALA LEU ILE ARG VAL ALA VAL PRO GLN SEQRES 9 A 185 LEU THR GLU GLU ARG ARG ARG GLU LEU VAL LYS GLN ALA SEQRES 10 A 185 LYS HIS LYS GLY GLU GLU ALA LYS VAL SER VAL ARG ASN SEQRES 11 A 185 ILE ARG ARG LYS ALA MET GLU GLU LEU HIS ARG ILE ARG SEQRES 12 A 185 LYS GLU GLY GLU ALA GLY GLU ASP GLU VAL GLY ARG ALA SEQRES 13 A 185 GLU LYS ASP LEU ASP LYS THR THR HIS GLN TYR VAL THR SEQRES 14 A 185 GLN ILE ASP GLU LEU VAL LYS HIS LYS GLU GLY GLU LEU SEQRES 15 A 185 LEU GLU VAL HET CD A 201 1 HET CD A 202 1 HETNAM CD CADMIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 HOH *84(H2 O) HELIX 1 1 ILE A 2 THR A 26 1 25 HELIX 2 2 ASN A 33 SER A 38 5 6 HELIX 3 3 GLU A 71 ASN A 73 5 3 HELIX 4 4 GLN A 74 SER A 85 1 12 HELIX 5 5 THR A 106 GLU A 145 1 40 HELIX 6 6 GLY A 149 VAL A 185 1 37 SHEET 1 A 2 THR A 41 TYR A 44 0 SHEET 2 A 2 ALA A 47 PRO A 50 -1 O THR A 49 N ILE A 42 SHEET 1 B 4 ALA A 55 ASN A 58 0 SHEET 2 B 4 LEU A 64 PRO A 69 -1 O VAL A 66 N ASN A 58 SHEET 3 B 4 ILE A 98 ALA A 101 -1 O ILE A 98 N ILE A 67 SHEET 4 B 4 THR A 92 ASN A 93 -1 N THR A 92 O ARG A 99 LINK SD MET A 136 CD CD A 202 1555 1555 2.99 LINK NE2 HIS A 140 CD CD A 202 1555 1555 2.24 LINK OE1 GLU A 157 CD CD A 202 1555 1555 2.35 LINK OD1 ASP A 161 CD CD A 201 1555 1555 2.45 LINK OD2 ASP A 161 CD CD A 201 1555 1555 2.47 LINK NE2 HIS A 165 CD CD A 201 1555 1555 2.34 SITE 1 AC1 4 GLU A 4 ASP A 8 ASP A 161 HIS A 165 SITE 1 AC2 5 GLU A 11 GLU A 14 MET A 136 HIS A 140 SITE 2 AC2 5 GLU A 157 CRYST1 95.200 40.450 68.540 90.00 118.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010504 0.000000 0.005682 0.00000 SCALE2 0.000000 0.024722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016588 0.00000