data_4KBD
# 
_entry.id   4KBD 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4KBD         pdb_00004kbd 10.2210/pdb4kbd/pdb 
RCSB  RCSB000190   ?            ?                   
WWPDB D_1000000190 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1999-10-14 
2 'Structure model' 1 1 2008-04-26 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-03-16 
5 'Structure model' 1 4 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_struct_assembly  
3 4 'Structure model' pdbx_struct_oper_list 
4 5 'Structure model' chem_comp_atom        
5 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4KBD 
_pdbx_database_status.recvd_initial_deposition_date   1998-11-30 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Tisne, C.'      1 
'Hartmann, B.'   2 
'Delepierre, M.' 3 
# 
_citation.id                        primary 
_citation.title                     
'NF-kappa B binding mechanism: a nuclear magnetic resonance and modeling study of a GGG --> CTC mutation.' 
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            38 
_citation.page_first                3883 
_citation.page_last                 3894 
_citation.year                      1999 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   10194299 
_citation.pdbx_database_id_DOI      10.1021/bi982402d 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Tisne, C.'      1 ? 
primary 'Hartmann, B.'   2 ? 
primary 'Delepierre, M.' 3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*CP*TP*GP*CP*TP*CP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3')
;
4825.129 1 ? ? ? ? 
2 polymer syn 
;DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*GP*AP*GP*CP*AP*G)-3')
;
4972.242 1 ? ? ? ? 
# 
loop_
_entity_name_com.entity_id 
_entity_name_com.name 
1 'MUTATED DNA KAPPA B SITE' 
2 'MUTATED DNA KAPPA B SITE' 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DC)(DT)(DC)(DA)(DC)(DT)(DT)(DT)(DC)(DC)(DA)(DG)(DG)' CTGCTCACTTTCCAGG A ? 
2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DG)(DT)(DG)(DA)(DG)(DC)(DA)(DG)' CCTGGAAAGTGAGCAG B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DT n 
1 3  DG n 
1 4  DC n 
1 5  DT n 
1 6  DC n 
1 7  DA n 
1 8  DC n 
1 9  DT n 
1 10 DT n 
1 11 DT n 
1 12 DC n 
1 13 DC n 
1 14 DA n 
1 15 DG n 
1 16 DG n 
2 1  DC n 
2 2  DC n 
2 3  DT n 
2 4  DG n 
2 5  DG n 
2 6  DA n 
2 7  DA n 
2 8  DA n 
2 9  DG n 
2 10 DT n 
2 11 DG n 
2 12 DA n 
2 13 DG n 
2 14 DC n 
2 15 DA n 
2 16 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DT 2  2  2  DT T A . n 
A 1 3  DG 3  3  3  DG G A . n 
A 1 4  DC 4  4  4  DC C A . n 
A 1 5  DT 5  5  5  DT T A . n 
A 1 6  DC 6  6  6  DC C A . n 
A 1 7  DA 7  7  7  DA A A . n 
A 1 8  DC 8  8  8  DC C A . n 
A 1 9  DT 9  9  9  DT T A . n 
A 1 10 DT 10 10 10 DT T A . n 
A 1 11 DT 11 11 11 DT T A . n 
A 1 12 DC 12 12 12 DC C A . n 
A 1 13 DC 13 13 13 DC C A . n 
A 1 14 DA 14 14 14 DA A A . n 
A 1 15 DG 15 15 15 DG G A . n 
A 1 16 DG 16 16 16 DG G A . n 
B 2 1  DC 1  17 17 DC C B . n 
B 2 2  DC 2  18 18 DC C B . n 
B 2 3  DT 3  19 19 DT T B . n 
B 2 4  DG 4  20 20 DG G B . n 
B 2 5  DG 5  21 21 DG G B . n 
B 2 6  DA 6  22 22 DA A B . n 
B 2 7  DA 7  23 23 DA A B . n 
B 2 8  DA 8  24 24 DA A B . n 
B 2 9  DG 9  25 25 DG G B . n 
B 2 10 DT 10 26 26 DT T B . n 
B 2 11 DG 11 27 27 DG G B . n 
B 2 12 DA 12 28 28 DA A B . n 
B 2 13 DG 13 29 29 DG G B . n 
B 2 14 DC 14 30 30 DC C B . n 
B 2 15 DA 15 31 31 DA A B . n 
B 2 16 DG 16 32 32 DG G B . n 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1 1 Y 1 A DC 1  ? "O5'" ? A DC 1 "O5'" 
2 1 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" 
3 2 Y 1 A DC 1  ? "O5'" ? A DC 1 "O5'" 
4 2 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" 
5 3 Y 1 A DC 1  ? "O5'" ? A DC 1 "O5'" 
6 3 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" 
# 
_cell.entry_id           4KBD 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         4KBD 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          4KBD 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          4KBD 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  4KBD 
_struct.title                     'DNA STRUCTURE OF A MUTATED KB SITE' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4KBD 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DNA STRUCTURE, MODELLING, DEOXYRIBONUCLEIC ACID, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 4KBD 4KBD ? ? ? 
2 2 PDB 4KBD 4KBD ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 4KBD A 1 ? 16 ? 4KBD 1  ? 16 ? 1  16 
2 2 4KBD B 1 ? 16 ? 4KBD 17 ? 32 ? 17 32 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 1  B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 1  B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 1  B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DT 2  N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 2  B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DT 2  O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 2  B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 3  N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3  B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DG 3  N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3  B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DG 3  O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3  B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DC 4  N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 4  B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DC 4  N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 4  B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DC 4  O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 4  B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DT 5  N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 5  B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DT 5  O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 5  B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DC 6  N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 6  B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DC 6  N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 6  B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DC 6  O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 6  B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DA 7  N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 7  B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DA 7  N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 7  B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DC 8  N3 ? ? ? 1_555 B DG 9  N1 ? ? A DC 8  B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DC 8  N4 ? ? ? 1_555 B DG 9  O6 ? ? A DC 8  B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 8  O2 ? ? ? 1_555 B DG 9  N2 ? ? A DC 8  B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DT 9  N3 ? ? ? 1_555 B DA 8  N1 ? ? A DT 9  B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DT 9  O4 ? ? ? 1_555 B DA 8  N6 ? ? A DT 9  B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 7  N1 ? ? A DT 10 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 7  N6 ? ? A DT 10 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 6  N1 ? ? A DT 11 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 6  N6 ? ? A DT 11 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 5  N1 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 5  O6 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 5  N2 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4  N1 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4  O6 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog33 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4  N2 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog34 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3  N3 ? ? A DA 14 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog35 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3  O4 ? ? A DA 14 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog36 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2  N3 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog37 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2  O2 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog38 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2  N4 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog39 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 1  N3 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog40 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 1  O2 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog41 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 1  N4 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.95 108.30 2.65  0.30 N 
2  1 "O4'" A DT 2  ? ? "C1'" A DT 2  ? ? N1    A DT 2  ? ? 112.10 108.30 3.80  0.30 N 
3  1 "O4'" A DG 3  ? ? "C1'" A DG 3  ? ? N9    A DG 3  ? ? 111.24 108.30 2.94  0.30 N 
4  1 "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.23 108.30 2.93  0.30 N 
5  1 "O4'" A DT 5  ? ? "C1'" A DT 5  ? ? N1    A DT 5  ? ? 111.42 108.30 3.12  0.30 N 
6  1 "O4'" A DC 6  ? ? "C1'" A DC 6  ? ? N1    A DC 6  ? ? 111.18 108.30 2.88  0.30 N 
7  1 "O4'" A DA 7  ? ? "C1'" A DA 7  ? ? N9    A DA 7  ? ? 111.95 108.30 3.65  0.30 N 
8  1 "O4'" A DC 8  ? ? "C1'" A DC 8  ? ? N1    A DC 8  ? ? 111.71 108.30 3.41  0.30 N 
9  1 "O4'" A DT 9  ? ? "C1'" A DT 9  ? ? N1    A DT 9  ? ? 111.41 108.30 3.11  0.30 N 
10 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1    A DT 10 ? ? 111.07 108.30 2.77  0.30 N 
11 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 112.20 108.30 3.90  0.30 N 
12 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1    A DC 12 ? ? 111.58 108.30 3.28  0.30 N 
13 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1    A DC 13 ? ? 111.10 108.30 2.80  0.30 N 
14 1 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9    A DA 14 ? ? 111.59 108.30 3.29  0.30 N 
15 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9    A DG 15 ? ? 111.48 108.30 3.18  0.30 N 
16 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9    A DG 16 ? ? 111.47 108.30 3.17  0.30 N 
17 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1    B DC 17 ? ? 111.80 108.30 3.50  0.30 N 
18 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 110.92 108.30 2.62  0.30 N 
19 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 111.15 108.30 2.85  0.30 N 
20 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9    B DG 20 ? ? 111.56 108.30 3.26  0.30 N 
21 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9    B DG 21 ? ? 111.27 108.30 2.97  0.30 N 
22 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9    B DA 22 ? ? 111.06 108.30 2.76  0.30 N 
23 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 111.14 108.30 2.84  0.30 N 
24 1 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9    B DA 24 ? ? 110.91 108.30 2.61  0.30 N 
25 1 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9    B DG 25 ? ? 112.18 108.30 3.88  0.30 N 
26 1 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1    B DT 26 ? ? 111.24 108.30 2.94  0.30 N 
27 1 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? N9    B DG 27 ? ? 112.08 108.30 3.78  0.30 N 
28 1 "O4'" B DA 28 ? ? "C1'" B DA 28 ? ? N9    B DA 28 ? ? 111.20 108.30 2.90  0.30 N 
29 1 "O4'" B DG 29 ? ? "C1'" B DG 29 ? ? N9    B DG 29 ? ? 112.10 108.30 3.80  0.30 N 
30 1 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1    B DC 30 ? ? 111.03 108.30 2.73  0.30 N 
31 1 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9    B DA 31 ? ? 111.82 108.30 3.52  0.30 N 
32 1 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9    B DG 32 ? ? 110.85 108.30 2.55  0.30 N 
33 2 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.33 108.30 3.03  0.30 N 
34 2 "O4'" A DT 2  ? ? "C1'" A DT 2  ? ? N1    A DT 2  ? ? 111.45 108.30 3.15  0.30 N 
35 2 "O4'" A DG 3  ? ? "C1'" A DG 3  ? ? N9    A DG 3  ? ? 111.48 108.30 3.18  0.30 N 
36 2 "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 110.86 108.30 2.56  0.30 N 
37 2 "O4'" A DT 5  ? ? "C1'" A DT 5  ? ? N1    A DT 5  ? ? 111.19 108.30 2.89  0.30 N 
38 2 "O4'" A DC 6  ? ? "C1'" A DC 6  ? ? N1    A DC 6  ? ? 110.74 108.30 2.44  0.30 N 
39 2 "O4'" A DA 7  ? ? "C1'" A DA 7  ? ? N9    A DA 7  ? ? 112.04 108.30 3.74  0.30 N 
40 2 "O4'" A DC 8  ? ? "C1'" A DC 8  ? ? N1    A DC 8  ? ? 111.78 108.30 3.48  0.30 N 
41 2 "O4'" A DT 9  ? ? "C1'" A DT 9  ? ? N1    A DT 9  ? ? 111.06 108.30 2.76  0.30 N 
42 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1    A DT 10 ? ? 110.76 108.30 2.46  0.30 N 
43 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 112.49 108.30 4.19  0.30 N 
44 2 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1    A DC 12 ? ? 111.02 108.30 2.72  0.30 N 
45 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1    A DC 13 ? ? 110.88 108.30 2.58  0.30 N 
46 2 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9    A DA 14 ? ? 111.24 108.30 2.94  0.30 N 
47 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9    A DG 15 ? ? 111.75 108.30 3.45  0.30 N 
48 2 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9    A DG 16 ? ? 110.91 108.30 2.61  0.30 N 
49 2 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1    B DC 17 ? ? 112.15 108.30 3.85  0.30 N 
50 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 110.71 108.30 2.41  0.30 N 
51 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 110.99 108.30 2.69  0.30 N 
52 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9    B DG 20 ? ? 111.15 108.30 2.85  0.30 N 
53 2 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9    B DG 21 ? ? 110.66 108.30 2.36  0.30 N 
54 2 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9    B DA 22 ? ? 110.68 108.30 2.38  0.30 N 
55 2 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 111.33 108.30 3.03  0.30 N 
56 2 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9    B DA 24 ? ? 110.48 108.30 2.18  0.30 N 
57 2 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? "C2'" B DG 25 ? ? 100.49 105.90 -5.41 0.80 N 
58 2 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9    B DG 25 ? ? 112.66 108.30 4.36  0.30 N 
59 2 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1    B DT 26 ? ? 110.83 108.30 2.53  0.30 N 
60 2 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? N9    B DG 27 ? ? 111.88 108.30 3.58  0.30 N 
61 2 "O4'" B DA 28 ? ? "C1'" B DA 28 ? ? N9    B DA 28 ? ? 111.00 108.30 2.70  0.30 N 
62 2 "O4'" B DG 29 ? ? "C1'" B DG 29 ? ? N9    B DG 29 ? ? 112.11 108.30 3.81  0.30 N 
63 2 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1    B DC 30 ? ? 110.84 108.30 2.54  0.30 N 
64 2 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9    B DA 31 ? ? 111.72 108.30 3.42  0.30 N 
65 2 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9    B DG 32 ? ? 111.66 108.30 3.36  0.30 N 
66 3 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.88 108.30 2.58  0.30 N 
67 3 "O4'" A DT 2  ? ? "C1'" A DT 2  ? ? N1    A DT 2  ? ? 112.03 108.30 3.73  0.30 N 
68 3 "O4'" A DG 3  ? ? "C1'" A DG 3  ? ? N9    A DG 3  ? ? 111.04 108.30 2.74  0.30 N 
69 3 "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.18 108.30 2.88  0.30 N 
70 3 "O4'" A DT 5  ? ? "C1'" A DT 5  ? ? N1    A DT 5  ? ? 111.34 108.30 3.04  0.30 N 
71 3 "O4'" A DC 6  ? ? "C1'" A DC 6  ? ? N1    A DC 6  ? ? 111.09 108.30 2.79  0.30 N 
72 3 "O4'" A DA 7  ? ? "C1'" A DA 7  ? ? N9    A DA 7  ? ? 111.91 108.30 3.61  0.30 N 
73 3 "O4'" A DC 8  ? ? "C1'" A DC 8  ? ? N1    A DC 8  ? ? 111.57 108.30 3.27  0.30 N 
74 3 "O4'" A DT 9  ? ? "C1'" A DT 9  ? ? N1    A DT 9  ? ? 111.39 108.30 3.09  0.30 N 
75 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1    A DT 10 ? ? 111.00 108.30 2.70  0.30 N 
76 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1    A DT 11 ? ? 112.11 108.30 3.81  0.30 N 
77 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1    A DC 12 ? ? 111.47 108.30 3.17  0.30 N 
78 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1    A DC 13 ? ? 111.10 108.30 2.80  0.30 N 
79 3 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9    A DA 14 ? ? 111.45 108.30 3.15  0.30 N 
80 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9    A DG 15 ? ? 111.35 108.30 3.05  0.30 N 
81 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9    A DG 16 ? ? 111.19 108.30 2.89  0.30 N 
82 3 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1    B DC 17 ? ? 111.75 108.30 3.45  0.30 N 
83 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 110.91 108.30 2.61  0.30 N 
84 3 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 111.16 108.30 2.86  0.30 N 
85 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9    B DG 20 ? ? 111.42 108.30 3.12  0.30 N 
86 3 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9    B DG 21 ? ? 111.30 108.30 3.00  0.30 N 
87 3 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9    B DA 22 ? ? 111.13 108.30 2.83  0.30 N 
88 3 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9    B DA 23 ? ? 111.06 108.30 2.76  0.30 N 
89 3 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9    B DA 24 ? ? 110.84 108.30 2.54  0.30 N 
90 3 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9    B DG 25 ? ? 112.20 108.30 3.90  0.30 N 
91 3 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1    B DT 26 ? ? 111.11 108.30 2.81  0.30 N 
92 3 "O4'" B DG 27 ? ? "C1'" B DG 27 ? ? N9    B DG 27 ? ? 111.94 108.30 3.64  0.30 N 
93 3 "O4'" B DA 28 ? ? "C1'" B DA 28 ? ? N9    B DA 28 ? ? 111.10 108.30 2.80  0.30 N 
94 3 "O4'" B DG 29 ? ? "C1'" B DG 29 ? ? N9    B DG 29 ? ? 112.03 108.30 3.73  0.30 N 
95 3 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1    B DC 30 ? ? 111.00 108.30 2.70  0.30 N 
96 3 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9    B DA 31 ? ? 111.79 108.30 3.49  0.30 N 
97 3 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9    B DG 32 ? ? 110.79 108.30 2.49  0.30 N 
# 
_pdbx_nmr_ensemble.entry_id                                      4KBD 
_pdbx_nmr_ensemble.conformers_calculated_total_number            ? 
_pdbx_nmr_ensemble.conformers_submitted_total_number             3 
_pdbx_nmr_ensemble.conformer_selection_criteria                  ENERGY 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.temperature         308.0 
_pdbx_nmr_exptl_sample_conditions.pressure            ? 
_pdbx_nmr_exptl_sample_conditions.pH                  7.0 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      ? 
_pdbx_nmr_exptl_sample_conditions.pressure_units      ? 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
_pdbx_nmr_exptl.experiment_id   1 
_pdbx_nmr_exptl.conditions_id   1 
_pdbx_nmr_exptl.type            NOESY 
_pdbx_nmr_exptl.solution_id     1 
# 
loop_
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
_pdbx_nmr_software.ordinal 
refinement              IRMA  ? 'BOELENS ET AL.' 1 
'structure calculation' JUMNA ? ?                2 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA OP3    O N N 1   
DA P      P N N 2   
DA OP1    O N N 3   
DA OP2    O N N 4   
DA "O5'"  O N N 5   
DA "C5'"  C N N 6   
DA "C4'"  C N R 7   
DA "O4'"  O N N 8   
DA "C3'"  C N S 9   
DA "O3'"  O N N 10  
DA "C2'"  C N N 11  
DA "C1'"  C N R 12  
DA N9     N Y N 13  
DA C8     C Y N 14  
DA N7     N Y N 15  
DA C5     C Y N 16  
DA C6     C Y N 17  
DA N6     N N N 18  
DA N1     N Y N 19  
DA C2     C Y N 20  
DA N3     N Y N 21  
DA C4     C Y N 22  
DA HOP3   H N N 23  
DA HOP2   H N N 24  
DA "H5'"  H N N 25  
DA "H5''" H N N 26  
DA "H4'"  H N N 27  
DA "H3'"  H N N 28  
DA "HO3'" H N N 29  
DA "H2'"  H N N 30  
DA "H2''" H N N 31  
DA "H1'"  H N N 32  
DA H8     H N N 33  
DA H61    H N N 34  
DA H62    H N N 35  
DA H2     H N N 36  
DC OP3    O N N 37  
DC P      P N N 38  
DC OP1    O N N 39  
DC OP2    O N N 40  
DC "O5'"  O N N 41  
DC "C5'"  C N N 42  
DC "C4'"  C N R 43  
DC "O4'"  O N N 44  
DC "C3'"  C N S 45  
DC "O3'"  O N N 46  
DC "C2'"  C N N 47  
DC "C1'"  C N R 48  
DC N1     N N N 49  
DC C2     C N N 50  
DC O2     O N N 51  
DC N3     N N N 52  
DC C4     C N N 53  
DC N4     N N N 54  
DC C5     C N N 55  
DC C6     C N N 56  
DC HOP3   H N N 57  
DC HOP2   H N N 58  
DC "H5'"  H N N 59  
DC "H5''" H N N 60  
DC "H4'"  H N N 61  
DC "H3'"  H N N 62  
DC "HO3'" H N N 63  
DC "H2'"  H N N 64  
DC "H2''" H N N 65  
DC "H1'"  H N N 66  
DC H41    H N N 67  
DC H42    H N N 68  
DC H5     H N N 69  
DC H6     H N N 70  
DG OP3    O N N 71  
DG P      P N N 72  
DG OP1    O N N 73  
DG OP2    O N N 74  
DG "O5'"  O N N 75  
DG "C5'"  C N N 76  
DG "C4'"  C N R 77  
DG "O4'"  O N N 78  
DG "C3'"  C N S 79  
DG "O3'"  O N N 80  
DG "C2'"  C N N 81  
DG "C1'"  C N R 82  
DG N9     N Y N 83  
DG C8     C Y N 84  
DG N7     N Y N 85  
DG C5     C Y N 86  
DG C6     C N N 87  
DG O6     O N N 88  
DG N1     N N N 89  
DG C2     C N N 90  
DG N2     N N N 91  
DG N3     N N N 92  
DG C4     C Y N 93  
DG HOP3   H N N 94  
DG HOP2   H N N 95  
DG "H5'"  H N N 96  
DG "H5''" H N N 97  
DG "H4'"  H N N 98  
DG "H3'"  H N N 99  
DG "HO3'" H N N 100 
DG "H2'"  H N N 101 
DG "H2''" H N N 102 
DG "H1'"  H N N 103 
DG H8     H N N 104 
DG H1     H N N 105 
DG H21    H N N 106 
DG H22    H N N 107 
DT OP3    O N N 108 
DT P      P N N 109 
DT OP1    O N N 110 
DT OP2    O N N 111 
DT "O5'"  O N N 112 
DT "C5'"  C N N 113 
DT "C4'"  C N R 114 
DT "O4'"  O N N 115 
DT "C3'"  C N S 116 
DT "O3'"  O N N 117 
DT "C2'"  C N N 118 
DT "C1'"  C N R 119 
DT N1     N N N 120 
DT C2     C N N 121 
DT O2     O N N 122 
DT N3     N N N 123 
DT C4     C N N 124 
DT O4     O N N 125 
DT C5     C N N 126 
DT C7     C N N 127 
DT C6     C N N 128 
DT HOP3   H N N 129 
DT HOP2   H N N 130 
DT "H5'"  H N N 131 
DT "H5''" H N N 132 
DT "H4'"  H N N 133 
DT "H3'"  H N N 134 
DT "HO3'" H N N 135 
DT "H2'"  H N N 136 
DT "H2''" H N N 137 
DT "H1'"  H N N 138 
DT H3     H N N 139 
DT H71    H N N 140 
DT H72    H N N 141 
DT H73    H N N 142 
DT H6     H N N 143 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA OP3   P      sing N N 1   
DA OP3   HOP3   sing N N 2   
DA P     OP1    doub N N 3   
DA P     OP2    sing N N 4   
DA P     "O5'"  sing N N 5   
DA OP2   HOP2   sing N N 6   
DA "O5'" "C5'"  sing N N 7   
DA "C5'" "C4'"  sing N N 8   
DA "C5'" "H5'"  sing N N 9   
DA "C5'" "H5''" sing N N 10  
DA "C4'" "O4'"  sing N N 11  
DA "C4'" "C3'"  sing N N 12  
DA "C4'" "H4'"  sing N N 13  
DA "O4'" "C1'"  sing N N 14  
DA "C3'" "O3'"  sing N N 15  
DA "C3'" "C2'"  sing N N 16  
DA "C3'" "H3'"  sing N N 17  
DA "O3'" "HO3'" sing N N 18  
DA "C2'" "C1'"  sing N N 19  
DA "C2'" "H2'"  sing N N 20  
DA "C2'" "H2''" sing N N 21  
DA "C1'" N9     sing N N 22  
DA "C1'" "H1'"  sing N N 23  
DA N9    C8     sing Y N 24  
DA N9    C4     sing Y N 25  
DA C8    N7     doub Y N 26  
DA C8    H8     sing N N 27  
DA N7    C5     sing Y N 28  
DA C5    C6     sing Y N 29  
DA C5    C4     doub Y N 30  
DA C6    N6     sing N N 31  
DA C6    N1     doub Y N 32  
DA N6    H61    sing N N 33  
DA N6    H62    sing N N 34  
DA N1    C2     sing Y N 35  
DA C2    N3     doub Y N 36  
DA C2    H2     sing N N 37  
DA N3    C4     sing Y N 38  
DC OP3   P      sing N N 39  
DC OP3   HOP3   sing N N 40  
DC P     OP1    doub N N 41  
DC P     OP2    sing N N 42  
DC P     "O5'"  sing N N 43  
DC OP2   HOP2   sing N N 44  
DC "O5'" "C5'"  sing N N 45  
DC "C5'" "C4'"  sing N N 46  
DC "C5'" "H5'"  sing N N 47  
DC "C5'" "H5''" sing N N 48  
DC "C4'" "O4'"  sing N N 49  
DC "C4'" "C3'"  sing N N 50  
DC "C4'" "H4'"  sing N N 51  
DC "O4'" "C1'"  sing N N 52  
DC "C3'" "O3'"  sing N N 53  
DC "C3'" "C2'"  sing N N 54  
DC "C3'" "H3'"  sing N N 55  
DC "O3'" "HO3'" sing N N 56  
DC "C2'" "C1'"  sing N N 57  
DC "C2'" "H2'"  sing N N 58  
DC "C2'" "H2''" sing N N 59  
DC "C1'" N1     sing N N 60  
DC "C1'" "H1'"  sing N N 61  
DC N1    C2     sing N N 62  
DC N1    C6     sing N N 63  
DC C2    O2     doub N N 64  
DC C2    N3     sing N N 65  
DC N3    C4     doub N N 66  
DC C4    N4     sing N N 67  
DC C4    C5     sing N N 68  
DC N4    H41    sing N N 69  
DC N4    H42    sing N N 70  
DC C5    C6     doub N N 71  
DC C5    H5     sing N N 72  
DC C6    H6     sing N N 73  
DG OP3   P      sing N N 74  
DG OP3   HOP3   sing N N 75  
DG P     OP1    doub N N 76  
DG P     OP2    sing N N 77  
DG P     "O5'"  sing N N 78  
DG OP2   HOP2   sing N N 79  
DG "O5'" "C5'"  sing N N 80  
DG "C5'" "C4'"  sing N N 81  
DG "C5'" "H5'"  sing N N 82  
DG "C5'" "H5''" sing N N 83  
DG "C4'" "O4'"  sing N N 84  
DG "C4'" "C3'"  sing N N 85  
DG "C4'" "H4'"  sing N N 86  
DG "O4'" "C1'"  sing N N 87  
DG "C3'" "O3'"  sing N N 88  
DG "C3'" "C2'"  sing N N 89  
DG "C3'" "H3'"  sing N N 90  
DG "O3'" "HO3'" sing N N 91  
DG "C2'" "C1'"  sing N N 92  
DG "C2'" "H2'"  sing N N 93  
DG "C2'" "H2''" sing N N 94  
DG "C1'" N9     sing N N 95  
DG "C1'" "H1'"  sing N N 96  
DG N9    C8     sing Y N 97  
DG N9    C4     sing Y N 98  
DG C8    N7     doub Y N 99  
DG C8    H8     sing N N 100 
DG N7    C5     sing Y N 101 
DG C5    C6     sing N N 102 
DG C5    C4     doub Y N 103 
DG C6    O6     doub N N 104 
DG C6    N1     sing N N 105 
DG N1    C2     sing N N 106 
DG N1    H1     sing N N 107 
DG C2    N2     sing N N 108 
DG C2    N3     doub N N 109 
DG N2    H21    sing N N 110 
DG N2    H22    sing N N 111 
DG N3    C4     sing N N 112 
DT OP3   P      sing N N 113 
DT OP3   HOP3   sing N N 114 
DT P     OP1    doub N N 115 
DT P     OP2    sing N N 116 
DT P     "O5'"  sing N N 117 
DT OP2   HOP2   sing N N 118 
DT "O5'" "C5'"  sing N N 119 
DT "C5'" "C4'"  sing N N 120 
DT "C5'" "H5'"  sing N N 121 
DT "C5'" "H5''" sing N N 122 
DT "C4'" "O4'"  sing N N 123 
DT "C4'" "C3'"  sing N N 124 
DT "C4'" "H4'"  sing N N 125 
DT "O4'" "C1'"  sing N N 126 
DT "C3'" "O3'"  sing N N 127 
DT "C3'" "C2'"  sing N N 128 
DT "C3'" "H3'"  sing N N 129 
DT "O3'" "HO3'" sing N N 130 
DT "C2'" "C1'"  sing N N 131 
DT "C2'" "H2'"  sing N N 132 
DT "C2'" "H2''" sing N N 133 
DT "C1'" N1     sing N N 134 
DT "C1'" "H1'"  sing N N 135 
DT N1    C2     sing N N 136 
DT N1    C6     sing N N 137 
DT C2    O2     doub N N 138 
DT C2    N3     sing N N 139 
DT N3    C4     sing N N 140 
DT N3    H3     sing N N 141 
DT C4    O4     doub N N 142 
DT C4    C5     sing N N 143 
DT C5    C7     sing N N 144 
DT C5    C6     doub N N 145 
DT C7    H71    sing N N 146 
DT C7    H72    sing N N 147 
DT C7    H73    sing N N 148 
DT C6    H6     sing N N 149 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
4KBD 'double helix'        
4KBD 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 16 1_555 0.254  -0.057 0.358  -12.343 -4.735  -2.020 1  A_DC1:DG32_B  A 1  ? B 32 ? 19 1 
1 A DT 2  1_555 B DA 15 1_555 -0.037 -0.037 -0.083 -7.068  -7.265  0.043  2  A_DT2:DA31_B  A 2  ? B 31 ? 20 1 
1 A DG 3  1_555 B DC 14 1_555 -0.203 -0.048 0.060  4.634   6.936   -0.896 3  A_DG3:DC30_B  A 3  ? B 30 ? 19 1 
1 A DC 4  1_555 B DG 13 1_555 0.280  -0.060 0.126  -5.065  0.210   -1.326 4  A_DC4:DG29_B  A 4  ? B 29 ? 19 1 
1 A DT 5  1_555 B DA 12 1_555 0.011  -0.048 0.054  0.918   -1.414  0.287  5  A_DT5:DA28_B  A 5  ? B 28 ? 20 1 
1 A DC 6  1_555 B DG 11 1_555 0.271  -0.070 0.110  -1.229  -3.652  -1.401 6  A_DC6:DG27_B  A 6  ? B 27 ? 19 1 
1 A DA 7  1_555 B DT 10 1_555 0.114  -0.010 0.023  5.823   -10.458 -2.462 7  A_DA7:DT26_B  A 7  ? B 26 ? 20 1 
1 A DC 8  1_555 B DG 9  1_555 0.346  -0.084 0.338  -8.328  -0.930  -1.593 8  A_DC8:DG25_B  A 8  ? B 25 ? 19 1 
1 A DT 9  1_555 B DA 8  1_555 -0.118 0.006  0.077  -13.939 -12.458 -2.206 9  A_DT9:DA24_B  A 9  ? B 24 ? 20 1 
1 A DT 10 1_555 B DA 7  1_555 -0.236 -0.015 -0.180 -9.299  -17.520 -0.906 10 A_DT10:DA23_B A 10 ? B 23 ? 20 1 
1 A DT 11 1_555 B DA 6  1_555 -0.021 -0.025 -0.138 -1.237  -11.279 -0.361 11 A_DT11:DA22_B A 11 ? B 22 ? 20 1 
1 A DC 12 1_555 B DG 5  1_555 0.317  -0.053 0.299  -12.779 8.438   -1.406 12 A_DC12:DG21_B A 12 ? B 21 ? 19 1 
1 A DC 13 1_555 B DG 4  1_555 0.339  -0.087 -0.082 -2.215  5.651   -1.664 13 A_DC13:DG20_B A 13 ? B 20 ? 19 1 
1 A DA 14 1_555 B DT 3  1_555 0.137  -0.005 0.244  0.260   0.405   -1.882 14 A_DA14:DT19_B A 14 ? B 19 ? 20 1 
1 A DG 15 1_555 B DC 2  1_555 -0.287 -0.006 0.687  24.984  10.330  -0.402 15 A_DG15:DC18_B A 15 ? B 18 ? 19 1 
1 A DG 16 1_555 B DC 1  1_555 -0.422 -0.095 -0.287 -4.401  5.116   -1.208 16 A_DG16:DC17_B A 16 ? B 17 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 16 1_555 A DT 2  1_555 B DA 15 1_555 0.751  -0.216 3.125 6.831  0.602   36.564 -0.417 -0.291 3.205 0.949   
-10.771 37.180 1  AA_DC1DT2:DA31DG32_BB   A 1  ? B 32 ? A 2  ? B 31 ? 
1 A DT 2  1_555 B DA 15 1_555 A DG 3  1_555 B DC 14 1_555 -0.564 -0.608 3.043 -5.891 3.904   32.098 -1.700 0.053  3.004 6.956   
10.496  32.847 2  AA_DT2DG3:DC30DA31_BB   A 2  ? B 31 ? A 3  ? B 30 ? 
1 A DG 3  1_555 B DC 14 1_555 A DC 4  1_555 B DG 13 1_555 0.030  -1.041 3.586 -0.216 -0.109  40.231 -1.500 -0.070 3.589 -0.159  
0.314   40.231 3  AA_DG3DC4:DG29DC30_BB   A 3  ? B 30 ? A 4  ? B 29 ? 
1 A DC 4  1_555 B DG 13 1_555 A DT 5  1_555 B DA 12 1_555 -0.332 -1.282 3.292 -0.704 -5.454  30.432 -1.304 0.482  3.470 -10.285 
1.328   30.913 4  AA_DC4DT5:DA28DG29_BB   A 4  ? B 29 ? A 5  ? B 28 ? 
1 A DT 5  1_555 B DA 12 1_555 A DC 6  1_555 B DG 11 1_555 -0.182 -0.772 3.312 -0.468 2.206   39.372 -1.406 0.214  3.268 3.270   
0.693   39.434 5  AA_DT5DC6:DG27DA28_BB   A 5  ? B 28 ? A 6  ? B 27 ? 
1 A DC 6  1_555 B DG 11 1_555 A DA 7  1_555 B DT 10 1_555 -0.062 -1.115 3.211 2.456  1.295   30.014 -2.401 0.606  3.146 2.493   
-4.729  30.139 6  AA_DC6DA7:DT26DG27_BB   A 6  ? B 27 ? A 7  ? B 26 ? 
1 A DA 7  1_555 B DT 10 1_555 A DC 8  1_555 B DG 9  1_555 0.440  -1.604 3.698 -3.607 1.467   35.189 -2.878 -1.315 3.569 2.417   
5.944   35.397 7  AA_DA7DC8:DG25DT26_BB   A 7  ? B 26 ? A 8  ? B 25 ? 
1 A DC 8  1_555 B DG 9  1_555 A DT 9  1_555 B DA 8  1_555 -0.803 -1.375 3.484 3.722  -2.328  31.030 -2.078 2.235  3.458 -4.325  
-6.913  31.331 8  AA_DC8DT9:DA24DG25_BB   A 8  ? B 25 ? A 9  ? B 24 ? 
1 A DT 9  1_555 B DA 8  1_555 A DT 10 1_555 B DA 7  1_555 -0.050 0.019  3.071 2.627  -3.535  41.015 0.384  0.337  3.050 -5.028  
-3.736  41.241 9  AA_DT9DT10:DA23DA24_BB  A 9  ? B 24 ? A 10 ? B 23 ? 
1 A DT 10 1_555 B DA 7  1_555 A DT 11 1_555 B DA 6  1_555 0.782  -0.206 3.068 0.504  -1.627  35.640 -0.114 -1.208 3.085 -2.656  
-0.823  35.680 10 AA_DT10DT11:DA22DA23_BB A 10 ? B 23 ? A 11 ? B 22 ? 
1 A DT 11 1_555 B DA 6  1_555 A DC 12 1_555 B DG 5  1_555 0.154  -1.239 3.692 -4.619 -0.641  38.341 -1.785 -0.876 3.669 -0.972  
7.001   38.613 11 AA_DT11DC12:DG21DA22_BB A 11 ? B 22 ? A 12 ? B 21 ? 
1 A DC 12 1_555 B DG 5  1_555 A DC 13 1_555 B DG 4  1_555 -0.385 -0.453 3.410 2.759  -13.691 38.292 0.967  0.881  3.340 -20.075 
-4.045  40.669 12 AA_DC12DC13:DG20DG21_BB A 12 ? B 21 ? A 13 ? B 20 ? 
1 A DC 13 1_555 B DG 4  1_555 A DA 14 1_555 B DT 3  1_555 0.009  1.802  4.617 -2.040 -48.224 41.734 4.407  -0.122 1.832 -51.468 
2.177   62.979 13 AA_DC13DA14:DT19DG20_BB A 13 ? B 20 ? A 14 ? B 19 ? 
1 A DA 14 1_555 B DT 3  1_555 A DG 15 1_555 B DC 2  1_555 0.614  -0.688 3.143 -3.537 -21.528 34.079 1.490  -1.300 2.979 -32.891 
5.404   40.289 14 AA_DA14DG15:DC18DT19_BB A 14 ? B 19 ? A 15 ? B 18 ? 
1 A DG 15 1_555 B DC 2  1_555 A DG 16 1_555 B DC 1  1_555 0.713  -1.787 4.513 9.208  -12.325 36.446 -0.467 0.572  4.880 -18.715 
-13.981 39.458 15 AA_DG15DG16:DC17DC18_BB A 15 ? B 18 ? A 16 ? B 17 ? 
# 
_pdbx_nmr_spectrometer.spectrometer_id   1 
_pdbx_nmr_spectrometer.model             UNITY 
_pdbx_nmr_spectrometer.manufacturer      Varian 
_pdbx_nmr_spectrometer.field_strength    500 
_pdbx_nmr_spectrometer.type              ? 
# 
_atom_sites.entry_id                    4KBD 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_