HEADER HYDROLASE 23-APR-13 4KBF TITLE TWO DIFFERENT OPEN CONFORMATIONS OF THE HELICASE CORE OF THE RNA TITLE 2 HELICASE HERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HELICASE CORE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 5 GENE: TT_C1895; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEAD BOX RNA HELICASE, DIMER, ATP-BINDING, HELICASE, HYDROLASE, KEYWDS 2 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 4 20-SEP-23 4KBF 1 REMARK LINK REVDAT 3 15-NOV-17 4KBF 1 REMARK REVDAT 2 25-DEC-13 4KBF 1 JRNL REVDAT 1 31-JUL-13 4KBF 0 JRNL AUTH D.KLOSTERMEIER JRNL TITL REARRANGING RNA STRUCTURES AT 75C? TOWARD THE MOLECULAR JRNL TITL 2 MECHANISM AND PHYSIOLOGICAL FUNCTION OF THE THERMUS JRNL TITL 3 THERMOPHILUS DEAD-BOX HELICASE HERA. JRNL REF BIOPOLYMERS V. 99 1137 2013 JRNL REFN ISSN 0006-3525 JRNL PMID 23765433 JRNL DOI 10.1002/BIP.22316 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1327) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 61164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8919 - 5.3217 1.00 2911 144 0.1866 0.2157 REMARK 3 2 5.3217 - 4.2247 1.00 2724 160 0.1596 0.1757 REMARK 3 3 4.2247 - 3.6909 1.00 2698 155 0.1716 0.2178 REMARK 3 4 3.6909 - 3.3535 1.00 2700 137 0.1773 0.1772 REMARK 3 5 3.3535 - 3.1132 1.00 2679 139 0.1904 0.2272 REMARK 3 6 3.1132 - 2.9297 1.00 2624 172 0.2013 0.1990 REMARK 3 7 2.9297 - 2.7830 1.00 2649 134 0.2032 0.2633 REMARK 3 8 2.7830 - 2.6619 1.00 2663 134 0.2076 0.2256 REMARK 3 9 2.6619 - 2.5594 1.00 2649 137 0.2045 0.2125 REMARK 3 10 2.5594 - 2.4711 0.99 2625 133 0.2062 0.2438 REMARK 3 11 2.4711 - 2.3938 0.99 2620 141 0.1943 0.2864 REMARK 3 12 2.3938 - 2.3254 0.99 2630 138 0.1931 0.1996 REMARK 3 13 2.3254 - 2.2642 0.99 2623 144 0.1922 0.2290 REMARK 3 14 2.2642 - 2.2089 0.99 2620 122 0.1983 0.2475 REMARK 3 15 2.2089 - 2.1587 0.99 2613 147 0.1973 0.2445 REMARK 3 16 2.1587 - 2.1128 0.99 2589 137 0.2073 0.2409 REMARK 3 17 2.1128 - 2.0705 0.99 2608 129 0.2190 0.2564 REMARK 3 18 2.0705 - 2.0314 0.99 2582 136 0.2441 0.2969 REMARK 3 19 2.0314 - 1.9952 0.99 2570 162 0.2396 0.2777 REMARK 3 20 1.9952 - 1.9613 0.99 2562 147 0.2425 0.2763 REMARK 3 21 1.9613 - 1.9297 0.99 2595 134 0.2749 0.3247 REMARK 3 22 1.9297 - 1.9000 0.97 2511 137 0.3695 0.4462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5762 REMARK 3 ANGLE : 0.977 7817 REMARK 3 CHIRALITY : 0.061 897 REMARK 3 PLANARITY : 0.005 1031 REMARK 3 DIHEDRAL : 14.606 2218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:207) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8015 -47.5538 -13.3779 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2573 REMARK 3 T33: 0.2343 T12: -0.0291 REMARK 3 T13: 0.0048 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 1.0513 L22: 1.1035 REMARK 3 L33: 3.3333 L12: -0.1636 REMARK 3 L13: 0.3590 L23: 0.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.0563 S13: 0.0202 REMARK 3 S21: -0.0917 S22: -0.0941 S23: -0.0638 REMARK 3 S31: -0.0219 S32: 0.4578 S33: 0.1435 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 208:365) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1541 -22.5722 -2.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.3020 T22: 0.3712 REMARK 3 T33: 0.2319 T12: -0.1005 REMARK 3 T13: 0.0028 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 3.6516 L22: 5.7323 REMARK 3 L33: 3.3145 L12: -0.1146 REMARK 3 L13: 0.3407 L23: -0.4084 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.6569 S13: 0.1770 REMARK 3 S21: 0.4130 S22: 0.0806 S23: -0.0212 REMARK 3 S31: -0.0038 S32: -0.1954 S33: -0.0825 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 1:207) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2183 -41.1083 21.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.3003 REMARK 3 T33: 0.3304 T12: 0.0382 REMARK 3 T13: 0.0006 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.0303 L22: 1.7872 REMARK 3 L33: 2.2582 L12: 0.0894 REMARK 3 L13: -0.1169 L23: -0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1771 S13: 0.2612 REMARK 3 S21: 0.2717 S22: 0.0397 S23: 0.1300 REMARK 3 S31: -0.2806 S32: -0.0645 S33: 0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 212:365) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3901 -10.1319 -19.3882 REMARK 3 T TENSOR REMARK 3 T11: 1.0516 T22: 0.9255 REMARK 3 T33: 1.3070 T12: 0.1563 REMARK 3 T13: -0.1793 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 5.8143 L22: 3.3673 REMARK 3 L33: 1.8781 L12: -1.7443 REMARK 3 L13: 0.5487 L23: -0.1819 REMARK 3 S TENSOR REMARK 3 S11: 0.1851 S12: -0.3834 S13: 0.3566 REMARK 3 S21: 0.5723 S22: 0.0747 S23: -1.3342 REMARK 3 S31: -0.3954 S32: 0.3149 S33: -0.2155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.01 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07190 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.73 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81720 REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GXQ, 2DB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.54750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.82250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.32125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.82250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.77375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.82250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.32125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.82250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.77375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.54750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CORE IS MONOMERIC WHILE THE INTACT HERA IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 512 O HOH B 556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 342 OE1 GLU B 83 6545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 46 -112.22 -110.93 REMARK 500 GLU A 152 61.49 71.44 REMARK 500 ASN A 199 59.40 38.17 REMARK 500 GLU B 152 61.58 60.21 REMARK 500 ARG B 223 78.23 -65.27 REMARK 500 SER B 273 -173.87 -68.50 REMARK 500 ALA B 283 -7.41 -149.28 REMARK 500 ASP B 303 49.07 -77.41 REMARK 500 ASP B 308 -75.31 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 4 O REMARK 620 2 PHE A 6 O 98.9 REMARK 620 3 HOH A 503 O 156.5 86.1 REMARK 620 4 HOH A 521 O 106.7 93.6 95.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 47 O REMARK 620 2 THR A 47 OG1 75.8 REMARK 620 3 PRO A 210 O 112.5 159.0 REMARK 620 4 THR A 212 OG1 81.5 79.7 82.5 REMARK 620 5 HOH A 590 O 94.9 91.2 106.7 170.8 REMARK 620 6 HOH A 591 O 154.5 78.7 91.2 93.0 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EAS RELATED DB: PDB REMARK 900 RELATED ID: 3EAR RELATED DB: PDB REMARK 900 RELATED ID: 3EAQ RELATED DB: PDB REMARK 900 RELATED ID: 4KBG RELATED DB: PDB DBREF 4KBF A 1 365 UNP Q72GF3 Q72GF3_THET2 8 372 DBREF 4KBF B 1 365 UNP Q72GF3 Q72GF3_THET2 8 372 SEQRES 1 A 365 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 365 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 365 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 365 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 365 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 365 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 365 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 365 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 365 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 365 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 365 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 365 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 365 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 365 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 365 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 365 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS ASP SEQRES 17 A 365 GLU PRO VAL THR TYR GLU GLU GLU ALA VAL PRO ALA PRO SEQRES 18 A 365 VAL ARG GLY ARG LEU GLU VAL LEU SER ASP LEU LEU TYR SEQRES 19 A 365 VAL ALA SER PRO ASP ARG ALA MET VAL PHE THR ARG THR SEQRES 20 A 365 LYS ALA GLU THR GLU GLU ILE ALA GLN GLY LEU LEU ARG SEQRES 21 A 365 LEU GLY HIS PRO ALA GLN ALA LEU HIS GLY ASP LEU SER SEQRES 22 A 365 GLN GLY GLU ARG GLU ARG VAL LEU GLY ALA PHE ARG GLN SEQRES 23 A 365 GLY GLU VAL ARG VAL LEU VAL ALA THR ASP VAL ALA ALA SEQRES 24 A 365 ARG GLY LEU ASP ILE PRO GLN VAL ASP LEU VAL VAL HIS SEQRES 25 A 365 TYR ARG LEU PRO ASP ARG ALA GLU ALA TYR GLN HIS ARG SEQRES 26 A 365 SER GLY ARG THR GLY ARG ALA GLY ARG GLY GLY ARG VAL SEQRES 27 A 365 VAL LEU LEU TYR GLY PRO ARG GLU ARG ARG ASP VAL GLU SEQRES 28 A 365 ALA LEU GLU ARG ALA VAL GLY ARG ARG PHE LYS ARG VAL SEQRES 29 A 365 ASN SEQRES 1 B 365 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 365 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 365 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 365 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 365 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 365 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 365 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 365 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 365 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 365 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 365 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 365 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 365 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 365 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 365 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 365 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS ASP SEQRES 17 B 365 GLU PRO VAL THR TYR GLU GLU GLU ALA VAL PRO ALA PRO SEQRES 18 B 365 VAL ARG GLY ARG LEU GLU VAL LEU SER ASP LEU LEU TYR SEQRES 19 B 365 VAL ALA SER PRO ASP ARG ALA MET VAL PHE THR ARG THR SEQRES 20 B 365 LYS ALA GLU THR GLU GLU ILE ALA GLN GLY LEU LEU ARG SEQRES 21 B 365 LEU GLY HIS PRO ALA GLN ALA LEU HIS GLY ASP LEU SER SEQRES 22 B 365 GLN GLY GLU ARG GLU ARG VAL LEU GLY ALA PHE ARG GLN SEQRES 23 B 365 GLY GLU VAL ARG VAL LEU VAL ALA THR ASP VAL ALA ALA SEQRES 24 B 365 ARG GLY LEU ASP ILE PRO GLN VAL ASP LEU VAL VAL HIS SEQRES 25 B 365 TYR ARG LEU PRO ASP ARG ALA GLU ALA TYR GLN HIS ARG SEQRES 26 B 365 SER GLY ARG THR GLY ARG ALA GLY ARG GLY GLY ARG VAL SEQRES 27 B 365 VAL LEU LEU TYR GLY PRO ARG GLU ARG ARG ASP VAL GLU SEQRES 28 B 365 ALA LEU GLU ARG ALA VAL GLY ARG ARG PHE LYS ARG VAL SEQRES 29 B 365 ASN HET AMP A 401 23 HET NA A 402 1 HET NA A 403 1 HET SO4 B 401 5 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 NA 2(NA 1+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *159(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 LEU A 36 1 12 HELIX 4 4 GLY A 50 LEU A 63 1 14 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 TYR A 110 GLY A 120 1 11 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 MET A 159 1 8 HELIX 9 9 PHE A 161 ALA A 171 1 11 HELIX 10 10 PRO A 186 TYR A 196 1 11 HELIX 11 11 ILE A 206 GLU A 209 5 4 HELIX 12 12 GLY A 224 SER A 237 1 14 HELIX 13 13 THR A 247 LEU A 261 1 15 HELIX 14 14 SER A 273 GLN A 286 1 14 HELIX 15 15 ARG A 318 GLY A 327 1 10 HELIX 16 16 GLU A 346 GLY A 358 1 13 HELIX 17 17 GLU B 2 PHE B 6 5 5 HELIX 18 18 LYS B 9 ARG B 19 1 11 HELIX 19 19 THR B 25 GLU B 37 1 13 HELIX 20 20 GLY B 50 LEU B 63 1 14 HELIX 21 21 THR B 81 ALA B 96 1 16 HELIX 22 22 GLY B 109 GLY B 120 1 12 HELIX 23 23 THR B 127 GLN B 137 1 11 HELIX 24 24 GLU B 152 MET B 159 1 8 HELIX 25 25 PHE B 161 ALA B 171 1 11 HELIX 26 26 PRO B 186 MET B 197 1 12 HELIX 27 27 GLY B 224 SER B 237 1 14 HELIX 28 28 LYS B 248 GLY B 262 1 15 HELIX 29 29 ALA B 319 GLY B 327 1 9 HELIX 30 30 GLU B 346 GLY B 358 1 13 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O VAL A 125 N VAL A 104 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O VAL A 124 SHEET 4 A14 VAL A 147 ASP A 151 1 O VAL A 149 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N ILE A 42 SHEET 8 A14 VAL B 201 ASN B 204 -1 O LEU B 202 N ASN A 204 SHEET 9 A14 LEU B 41 GLN B 44 1 N GLN B 44 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 ASP B 151 1 N LEU B 150 O PHE B 181 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 76 O VAL B 149 SHEET 13 A14 ALA B 123 ALA B 126 1 O VAL B 124 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 104 O VAL B 125 SHEET 1 B 7 ALA A 265 LEU A 268 0 SHEET 2 B 7 VAL A 291 ALA A 294 1 O VAL A 293 N LEU A 268 SHEET 3 B 7 ALA A 241 PHE A 244 1 N VAL A 243 O LEU A 292 SHEET 4 B 7 LEU A 309 HIS A 312 1 O VAL A 311 N PHE A 244 SHEET 5 B 7 ARG A 337 TYR A 342 1 O VAL A 339 N HIS A 312 SHEET 6 B 7 GLU A 214 PRO A 219 1 N VAL A 218 O LEU A 340 SHEET 7 B 7 LYS A 362 ARG A 363 1 O LYS A 362 N ALA A 217 SHEET 1 C 7 ALA B 265 GLN B 266 0 SHEET 2 C 7 VAL B 291 THR B 295 1 O VAL B 293 N GLN B 266 SHEET 3 C 7 ALA B 241 THR B 245 1 N ALA B 241 O LEU B 292 SHEET 4 C 7 LEU B 309 HIS B 312 1 O VAL B 311 N MET B 242 SHEET 5 C 7 ARG B 337 LEU B 341 1 O VAL B 339 N VAL B 310 SHEET 6 C 7 GLU B 214 VAL B 218 1 N VAL B 218 O LEU B 340 SHEET 7 C 7 LYS B 362 ARG B 363 1 O LYS B 362 N ALA B 217 LINK O LYS A 4 NA NA A 402 1555 1555 2.40 LINK O PHE A 6 NA NA A 402 1555 1555 2.36 LINK O THR A 47 NA NA A 403 1555 1555 2.43 LINK OG1 THR A 47 NA NA A 403 1555 1555 2.65 LINK O PRO A 210 NA NA A 403 1555 1555 2.44 LINK OG1 THR A 212 NA NA A 403 1555 1555 2.58 LINK NA NA A 402 O HOH A 503 1555 1555 2.35 LINK NA NA A 402 O HOH A 521 1555 1555 2.37 LINK NA NA A 403 O HOH A 590 1555 1555 2.26 LINK NA NA A 403 O HOH A 591 1555 1555 2.39 SITE 1 AC1 16 PHE A 3 LEU A 21 THR A 23 GLN A 28 SITE 2 AC1 16 GLY A 48 THR A 49 GLY A 50 LYS A 51 SITE 3 AC1 16 THR A 52 LEU A 53 GLU A 91 HOH A 511 SITE 4 AC1 16 HOH A 592 HOH A 593 LYS B 362 ASN B 365 SITE 1 AC2 5 LYS A 4 PHE A 6 SER A 170 HOH A 503 SITE 2 AC2 5 HOH A 521 SITE 1 AC3 5 THR A 47 PRO A 210 THR A 212 HOH A 590 SITE 2 AC3 5 HOH A 591 SITE 1 AC4 7 THR B 47 GLY B 48 THR B 49 GLY B 50 SITE 2 AC4 7 LYS B 51 THR B 52 HOH B 533 CRYST1 119.645 119.645 107.095 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009338 0.00000