HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 23-APR-13 4KBN TITLE HUMAN DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-(3,5- TITLE 2 PYRIMIDINE)]-PHENYL-PROP-1-YN-1-YL}-6-ETHYL-PYRIMIDINE-2,4DIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR, HUDHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41(A+) KEYWDS OXIDOREDUCTASE, 5, 6, 7, 8-TETRAHYDROFOLATE, NADP+, HYDRIDE SHIFT, KEYWDS 2 CYTOSOL, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.LAMB,A.C.ANDERSON REVDAT 4 20-SEP-23 4KBN 1 REMARK LINK REVDAT 3 20-NOV-13 4KBN 1 HET HETATM HETNAM REMARK REVDAT 2 30-OCT-13 4KBN 1 JRNL REVDAT 1 09-OCT-13 4KBN 0 JRNL AUTH K.M.LAMB,N.G-DAYANANDAN,D.L.WRIGHT,A.C.ANDERSON JRNL TITL ELUCIDATING FEATURES THAT DRIVE THE DESIGN OF SELECTIVE JRNL TITL 2 ANTIFOLATES USING CRYSTAL STRUCTURES OF HUMAN DIHYDROFOLATE JRNL TITL 3 REDUCTASE. JRNL REF BIOCHEMISTRY V. 52 7318 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24053334 JRNL DOI 10.1021/BI400852H REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0120 - 4.2117 0.99 2837 164 0.1968 0.2410 REMARK 3 2 4.2117 - 3.3432 0.99 2764 150 0.1864 0.2161 REMARK 3 3 3.3432 - 2.9207 0.99 2749 127 0.2170 0.2540 REMARK 3 4 2.9207 - 2.6537 0.99 2770 118 0.2371 0.3135 REMARK 3 5 2.6537 - 2.4635 0.99 2696 139 0.2501 0.3039 REMARK 3 6 2.4635 - 2.3182 0.99 2718 153 0.2504 0.3174 REMARK 3 7 2.3182 - 2.2021 0.99 2681 150 0.2605 0.3052 REMARK 3 8 2.2021 - 2.1063 1.00 2736 144 0.2708 0.3390 REMARK 3 9 2.1063 - 2.0252 1.00 2709 135 0.2755 0.3475 REMARK 3 10 2.0252 - 1.9553 1.00 2670 161 0.2860 0.3745 REMARK 3 11 1.9553 - 1.8942 1.00 2712 144 0.3100 0.3577 REMARK 3 12 1.8942 - 1.8400 1.00 2686 138 0.3088 0.3979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3492 REMARK 3 ANGLE : 0.955 4756 REMARK 3 CHIRALITY : 0.064 493 REMARK 3 PLANARITY : 0.004 610 REMARK 3 DIHEDRAL : 16.771 1400 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : COPPER ANODE REMARK 200 OPTICS : VARIMAX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : STRUCTURESTUDIO REMARK 200 DATA SCALING SOFTWARE : STRUCTURESTUDIO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.11 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 0.2-0.3M LI2SO4, 25-32% REMARK 280 (W/V) PEG 4000, 8% (V/V) ETHANOL, 11MM MGCL2, 11MM SRCL2, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.99550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.99550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.83450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.89200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.83450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.89200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.99550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.83450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.89200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.99550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.83450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.89200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 110 -98.17 -88.29 REMARK 500 ASP A 110 -98.62 -88.29 REMARK 500 MET A 139 42.06 -85.49 REMARK 500 MET A 139 46.46 -84.25 REMARK 500 ASP B 110 -97.86 -90.69 REMARK 500 ASP B 110 -96.36 -90.69 REMARK 500 MET B 139 46.39 -85.97 REMARK 500 MET B 139 42.95 -83.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 140 OE1 REMARK 620 2 ASP B 110 OD1 169.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 160 O REMARK 620 2 HOH A 425 O 98.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 201 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 171 OE2 REMARK 620 2 GLY B 2 N 73.5 REMARK 620 3 SER B 3 N 116.3 56.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 212 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 145 OD1 REMARK 620 2 NDP B 214 O3D 132.8 REMARK 620 3 HOH B 413 O 107.2 91.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 213 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 336 O REMARK 620 2 HOH B 445 O 103.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 25U A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 25U B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KAK RELATED DB: PDB REMARK 900 RELATED ID: 4KD7 RELATED DB: PDB REMARK 900 RELATED ID: 4KEB RELATED DB: PDB REMARK 900 RELATED ID: 4KFJ RELATED DB: PDB DBREF 4KBN A 1 186 UNP P00374 DYR_HUMAN 2 187 DBREF 4KBN B 1 186 UNP P00374 DYR_HUMAN 2 187 SEQRES 1 A 186 VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN ASN SEQRES 2 A 186 MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO PRO SEQRES 3 A 186 LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR THR SEQRES 4 A 186 THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE MET SEQRES 5 A 186 GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN ARG SEQRES 6 A 186 PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG GLU SEQRES 7 A 186 LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER ARG SEQRES 8 A 186 SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO GLU SEQRES 9 A 186 LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY GLY SEQRES 10 A 186 SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY HIS SEQRES 11 A 186 LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE GLU SEQRES 12 A 186 SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS TYR SEQRES 13 A 186 LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP VAL SEQRES 14 A 186 GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL TYR SEQRES 15 A 186 GLU LYS ASN ASP SEQRES 1 B 186 VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN ASN SEQRES 2 B 186 MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO PRO SEQRES 3 B 186 LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR THR SEQRES 4 B 186 THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE MET SEQRES 5 B 186 GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN ARG SEQRES 6 B 186 PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG GLU SEQRES 7 B 186 LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER ARG SEQRES 8 B 186 SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO GLU SEQRES 9 B 186 LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY GLY SEQRES 10 B 186 SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY HIS SEQRES 11 B 186 LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE GLU SEQRES 12 B 186 SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS TYR SEQRES 13 B 186 LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP VAL SEQRES 14 B 186 GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL TYR SEQRES 15 B 186 GLU LYS ASN ASP HET 25U A 201 25 HET EOH A 202 3 HET CL A 203 1 HET CL A 204 1 HET MG A 205 1 HET CL A 206 1 HET CL A 207 1 HET CL A 208 1 HET MG A 209 1 HET NDP A 210 48 HET MG A 211 1 HET SR B 201 1 HET 25U B 202 25 HET EOH B 203 3 HET EOH B 204 3 HET CL B 205 1 HET MG B 206 1 HET CL B 207 1 HET CL B 208 1 HET MG B 209 1 HET MG B 210 1 HET NH4 B 211 1 HET MG B 212 1 HET MG B 213 1 HET NDP B 214 48 HET MG B 215 1 HETNAM 25U 6-ETHYL-5-{3-[3-(PYRIMIDIN-5-YL)PHENYL]PROP-1-YN-1- HETNAM 2 25U YL}PYRIMIDINE-2,4-DIAMINE HETNAM EOH ETHANOL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM SR STRONTIUM ION HETNAM NH4 AMMONIUM ION FORMUL 3 25U 2(C19 H18 N6) FORMUL 4 EOH 3(C2 H6 O) FORMUL 5 CL 8(CL 1-) FORMUL 7 MG 9(MG 2+) FORMUL 12 NDP 2(C21 H30 N7 O17 P3) FORMUL 14 SR SR 2+ FORMUL 24 NH4 H4 N 1+ FORMUL 29 HOH *355(H2 O) HELIX 1 1 LEU A 27 THR A 40 1 14 HELIX 2 2 LYS A 54 ILE A 60 1 7 HELIX 3 3 PRO A 61 ARG A 65 5 5 HELIX 4 4 SER A 92 THR A 100 1 9 HELIX 5 5 GLY A 117 HIS A 127 1 11 HELIX 6 6 LEU B 27 THR B 40 1 14 HELIX 7 7 LYS B 54 ILE B 60 1 7 HELIX 8 8 PRO B 61 ARG B 65 5 5 HELIX 9 9 SER B 92 THR B 100 1 9 HELIX 10 10 GLY B 117 ASN B 126 1 10 SHEET 1 A 8 PHE A 88 SER A 90 0 SHEET 2 A 8 ARG A 70 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 A 8 GLN A 47 GLY A 53 1 N VAL A 50 O LEU A 73 SHEET 4 A 8 VAL A 109 ILE A 114 1 O TRP A 113 N LEU A 49 SHEET 5 A 8 SER A 3 VAL A 10 1 N ASN A 5 O ILE A 114 SHEET 6 A 8 HIS A 130 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 A 8 ILE A 175 LYS A 184 -1 O TYR A 182 N LEU A 133 SHEET 8 A 8 LYS A 157 LEU A 159 -1 N LEU A 159 O VAL A 181 SHEET 1 B 8 PHE A 88 SER A 90 0 SHEET 2 B 8 ARG A 70 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 B 8 GLN A 47 GLY A 53 1 N VAL A 50 O LEU A 73 SHEET 4 B 8 VAL A 109 ILE A 114 1 O TRP A 113 N LEU A 49 SHEET 5 B 8 SER A 3 VAL A 10 1 N ASN A 5 O ILE A 114 SHEET 6 B 8 HIS A 130 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 B 8 ILE A 175 LYS A 184 -1 O TYR A 182 N LEU A 133 SHEET 8 B 8 GLN A 170 GLU A 172 -1 N GLN A 170 O TYR A 177 SHEET 1 C 2 GLY A 15 GLY A 17 0 SHEET 2 C 2 THR A 146 PHE A 147 -1 O THR A 146 N ILE A 16 SHEET 1 D 8 PHE B 88 SER B 90 0 SHEET 2 D 8 ARG B 70 LEU B 75 1 N VAL B 74 O PHE B 88 SHEET 3 D 8 GLN B 47 GLY B 53 1 N MET B 52 O LEU B 75 SHEET 4 D 8 VAL B 109 ILE B 114 1 O TRP B 113 N LEU B 49 SHEET 5 D 8 SER B 3 VAL B 10 1 N ASN B 5 O ILE B 114 SHEET 6 D 8 HIS B 130 ILE B 138 1 O PHE B 134 N CYS B 6 SHEET 7 D 8 ILE B 175 LYS B 184 -1 O TYR B 182 N LEU B 133 SHEET 8 D 8 LYS B 157 LEU B 158 -1 N LYS B 157 O GLU B 183 SHEET 1 E 8 PHE B 88 SER B 90 0 SHEET 2 E 8 ARG B 70 LEU B 75 1 N VAL B 74 O PHE B 88 SHEET 3 E 8 GLN B 47 GLY B 53 1 N MET B 52 O LEU B 75 SHEET 4 E 8 VAL B 109 ILE B 114 1 O TRP B 113 N LEU B 49 SHEET 5 E 8 SER B 3 VAL B 10 1 N ASN B 5 O ILE B 114 SHEET 6 E 8 HIS B 130 ILE B 138 1 O PHE B 134 N CYS B 6 SHEET 7 E 8 ILE B 175 LYS B 184 -1 O TYR B 182 N LEU B 133 SHEET 8 E 8 GLN B 170 GLU B 172 -1 N GLN B 170 O TYR B 177 SHEET 1 F 2 GLY B 15 GLY B 17 0 SHEET 2 F 2 THR B 146 PHE B 147 -1 O THR B 146 N ILE B 16 LINK OE1 GLN A 140 MG MG B 210 1555 1555 3.00 LINK O PRO A 160 MG MG A 205 1555 1555 2.38 LINK OE2 GLU A 171 SR SR B 201 1555 1555 2.55 LINK MG MG A 205 O HOH A 425 1555 1555 2.71 LINK MG MG A 211 O HOH A 450 1555 1555 2.53 LINK N GLY B 2 SR SR B 201 1555 1555 2.88 LINK N SER B 3 SR SR B 201 1555 1555 2.83 LINK OD1 ASP B 21 MG MG B 206 1555 1555 2.79 LINK OD1 ASP B 110 MG MG B 210 1555 1555 2.88 LINK OD1 ASP B 145 MG MG B 212 1555 1555 2.78 LINK MG MG B 212 O3D NDP B 214 1555 1555 2.88 LINK MG MG B 212 O HOH B 413 1555 1555 2.52 LINK MG MG B 213 O HOH B 336 1555 1555 2.80 LINK MG MG B 213 O HOH B 445 1555 1555 2.37 CISPEP 1 ARG A 65 PRO A 66 0 -4.27 CISPEP 2 GLY A 116 GLY A 117 0 7.01 CISPEP 3 ARG B 65 PRO B 66 0 -3.75 CISPEP 4 GLY B 116 GLY B 117 0 5.61 SITE 1 AC1 13 ILE A 7 VAL A 8 ALA A 9 GLU A 30 SITE 2 AC1 13 PHE A 34 THR A 56 ILE A 60 PRO A 61 SITE 3 AC1 13 LEU A 67 TYR A 121 THR A 136 NDP A 210 SITE 4 AC1 13 HOH A 325 SITE 1 AC2 6 VAL A 10 SER A 11 GLN A 12 MET A 14 SITE 2 AC2 6 ARG A 137 HOH A 481 SITE 1 AC3 3 MG A 209 HOH A 461 HOH A 464 SITE 1 AC4 3 GLU A 171 LYS A 173 GLY A 174 SITE 1 AC5 3 PRO A 160 SER A 167 HOH A 425 SITE 1 AC6 4 SER A 42 VAL A 43 HOH A 469 MET B 139 SITE 1 AC7 2 GLN A 35 ARG A 70 SITE 1 AC8 3 ASN A 29 ARG A 32 HOH A 318 SITE 1 AC9 3 ASP A 168 GLN A 170 CL A 203 SITE 1 BC1 29 VAL A 8 ALA A 9 ILE A 16 GLY A 20 SITE 2 BC1 29 ASP A 21 GLY A 53 LYS A 54 LYS A 55 SITE 3 BC1 29 THR A 56 LEU A 75 SER A 76 ARG A 77 SITE 4 BC1 29 GLU A 78 ARG A 91 VAL A 115 GLY A 117 SITE 5 BC1 29 SER A 118 SER A 119 VAL A 120 TYR A 121 SITE 6 BC1 29 GLU A 123 THR A 146 25U A 201 HOH A 307 SITE 7 BC1 29 HOH A 322 HOH A 327 HOH A 350 HOH A 403 SITE 8 BC1 29 HOH A 440 SITE 1 BC2 3 ASP A 168 VAL A 169 HOH A 450 SITE 1 BC3 6 GLU A 171 GLY A 174 VAL B 1 GLY B 2 SITE 2 BC3 6 SER B 3 CL B 205 SITE 1 BC4 17 ILE B 7 VAL B 8 ALA B 9 LEU B 22 SITE 2 BC4 17 GLU B 30 PHE B 31 PHE B 34 THR B 56 SITE 3 BC4 17 ILE B 60 PRO B 61 LEU B 67 VAL B 115 SITE 4 BC4 17 TYR B 121 THR B 136 NDP B 214 HOH B 327 SITE 5 BC4 17 HOH B 358 SITE 1 BC5 3 ASN A 185 LYS B 173 HOH B 456 SITE 1 BC6 1 GLU B 62 SITE 1 BC7 4 SER B 3 ASN B 5 SR B 201 HOH B 308 SITE 1 BC8 2 ASP B 21 NH4 B 211 SITE 1 BC9 1 PRO B 163 SITE 1 CC1 3 GLN B 35 HOH B 346 HOH B 366 SITE 1 CC2 2 GLN A 140 ASP B 110 SITE 1 CC3 3 LEU B 22 TRP B 24 MG B 206 SITE 1 CC4 7 LYS B 18 ASN B 19 GLY B 20 ASP B 145 SITE 2 CC4 7 THR B 146 NDP B 214 HOH B 413 SITE 1 CC5 4 LEU B 153 TYR B 156 HOH B 336 HOH B 445 SITE 1 CC6 29 VAL B 8 ALA B 9 ILE B 16 GLY B 20 SITE 2 CC6 29 ASP B 21 GLY B 53 LYS B 54 LYS B 55 SITE 3 CC6 29 THR B 56 LEU B 75 SER B 76 ARG B 77 SITE 4 CC6 29 GLU B 78 ARG B 91 VAL B 115 GLY B 117 SITE 5 CC6 29 SER B 118 SER B 119 VAL B 120 TYR B 121 SITE 6 CC6 29 GLU B 123 THR B 146 25U B 202 MG B 212 SITE 7 CC6 29 HOH B 317 HOH B 355 HOH B 378 HOH B 381 SITE 8 CC6 29 HOH B 413 CRYST1 87.669 93.784 95.991 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010418 0.00000