HEADER ISOMERASE 24-APR-13 4KD6 TITLE CRYSTAL STRUCTURE OF A ENOYL-COA HYDRATASE/ISOMERASE FROM BURKHOLDERIA TITLE 2 GRAMINIS C4D1M COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE/ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GRAMINIS; SOURCE 3 ORGANISM_TAXID: 396598; SOURCE 4 STRAIN: C4D1M; SOURCE 5 GENE: BGRAMDRAFT_6579; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 ALPHA/BETA, TRIMERIC ASSEMBLY, LIPID METABOLISM, CROTONASE KEYWDS 4 SUPERFAMILY, ENOYL-COA, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,N.AL OBAIDI,S.C.ALMO, AUTHOR 3 S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 1 24-JUL-13 4KD6 0 JRNL AUTH D.KUMARAN,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A ENOYL-COA HYDRATASE/ISOMERASE FROM JRNL TITL 2 BURKHOLDERIA GRAMINIS C4D1M JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1669 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00000 REMARK 3 B22 (A**2) : -0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1699 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1662 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2298 ; 2.034 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3805 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;35.633 ;22.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;14.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.110 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1912 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB079189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE, ARP/WARP AND COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% DIOXANE, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.46600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.46600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.46600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 118.48100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 59.24050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 102.60756 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 69 REMARK 465 ALA A 70 REMARK 465 HIS A 71 REMARK 465 ASP A 72 REMARK 465 PHE A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 GLU A 76 REMARK 465 ARG A 77 REMARK 465 ALA A 78 REMARK 465 VAL A 79 REMARK 465 ALA A 80 REMARK 465 GLN A 231 REMARK 465 ARG A 232 REMARK 465 GLU A 233 REMARK 465 ALA A 234 REMARK 465 TYR A 235 REMARK 465 ASP A 236 REMARK 465 SER A 237 REMARK 465 GLY A 238 REMARK 465 GLU A 239 REMARK 465 PRO A 240 REMARK 465 ALA A 241 REMARK 465 ARG A 242 REMARK 465 MSE A 243 REMARK 465 MSE A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 PHE A 247 REMARK 465 PHE A 248 REMARK 465 SER A 249 REMARK 465 LYS A 250 REMARK 465 ARG A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 225 CD GLU A 225 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 67 4.25 -64.63 REMARK 500 GLU A 228 -73.97 -54.21 REMARK 500 ARG A 229 -71.44 -34.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-028416 RELATED DB: TARGETTRACK DBREF 4KD6 A 1 253 UNP B1GB42 B1GB42_9BURK 1 253 SEQADV 4KD6 MSE A -21 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -20 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -19 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -18 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -17 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -16 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 HIS A -15 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 SER A -14 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 SER A -13 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 GLY A -12 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 VAL A -11 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 ASP A -10 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 LEU A -9 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 GLY A -8 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 THR A -7 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 GLU A -6 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 ASN A -5 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 LEU A -4 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 TYR A -3 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 PHE A -2 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 GLN A -1 UNP B1GB42 EXPRESSION TAG SEQADV 4KD6 SER A 0 UNP B1GB42 EXPRESSION TAG SEQRES 1 A 275 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 275 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER ASN ASP SEQRES 3 A 275 VAL LEU PHE SER ASN HIS GLY ARG VAL ALA VAL ILE THR SEQRES 4 A 275 LEU ASN ARG PRO GLU ARG LEU ASN ALA TRP THR THR PRO SEQRES 5 A 275 MSE ARG GLU THR ILE ILE ASP ALA LEU GLU ARG PHE ASN SEQRES 6 A 275 ARG ASP PRO GLU VAL ALA ALA ILE ILE MSE THR GLY ALA SEQRES 7 A 275 GLY ASN ARG ALA PHE SER ALA GLY GLN ASP LEU SER GLU SEQRES 8 A 275 ALA HIS ASP PHE ASP GLY GLU ARG ALA VAL ALA TRP VAL SEQRES 9 A 275 LYS GLU TRP GLN ARG TYR TYR THR ALA LEU ARG SER LEU SEQRES 10 A 275 SER LYS PRO LEU VAL MSE ALA LEU ASN GLY THR ALA ALA SEQRES 11 A 275 GLY SER ALA PHE GLN VAL ALA LEU LEU GLY ASP ILE ARG SEQRES 12 A 275 VAL GLY HIS PRO GLY VAL ARG MSE GLY GLN PRO GLU ILE SEQRES 13 A 275 ASN ALA GLY ILE ALA SER THR THR GLY PRO TRP ILE MSE SEQRES 14 A 275 ASN ALA MSE LEU GLY MSE SER ARG THR ILE GLU LEU THR SEQRES 15 A 275 LEU THR GLY ARG LEU MSE GLU ALA GLU GLU CYS HIS ARG SEQRES 16 A 275 ILE GLY LEU ILE HIS HIS LEU VAL ASP GLU ASP LYS VAL SEQRES 17 A 275 PHE ASP LYS ALA LEU GLU ILE ALA THR GLU LEU ALA ALA SEQRES 18 A 275 LYS PRO PRO VAL ALA MSE ARG LEU ASP LYS GLN ARG PHE SEQRES 19 A 275 ARG GLU MSE THR GLU PRO GLY PHE ILE ASP CYS ILE GLU SEQRES 20 A 275 ALA GLY GLU ARG ILE GLN ARG GLU ALA TYR ASP SER GLY SEQRES 21 A 275 GLU PRO ALA ARG MSE MSE GLU GLU PHE PHE SER LYS ARG SEQRES 22 A 275 ALA LYS MODRES 4KD6 MSE A 31 MET SELENOMETHIONINE MODRES 4KD6 MSE A 53 MET SELENOMETHIONINE MODRES 4KD6 MSE A 101 MET SELENOMETHIONINE MODRES 4KD6 MSE A 129 MET SELENOMETHIONINE MODRES 4KD6 MSE A 147 MET SELENOMETHIONINE MODRES 4KD6 MSE A 150 MET SELENOMETHIONINE MODRES 4KD6 MSE A 153 MET SELENOMETHIONINE MODRES 4KD6 MSE A 166 MET SELENOMETHIONINE MODRES 4KD6 MSE A 205 MET SELENOMETHIONINE MODRES 4KD6 MSE A 215 MET SELENOMETHIONINE HET MSE A 31 8 HET MSE A 53 8 HET MSE A 101 8 HET MSE A 129 8 HET MSE A 147 8 HET MSE A 150 8 HET MSE A 153 8 HET MSE A 166 8 HET MSE A 205 8 HET MSE A 215 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *77(H2 O) HELIX 1 1 ARG A 20 LEU A 24 5 5 HELIX 2 2 THR A 28 ASP A 45 1 18 HELIX 3 3 VAL A 82 SER A 94 1 13 HELIX 4 4 GLY A 109 GLY A 118 1 10 HELIX 5 5 PRO A 132 GLY A 137 5 6 HELIX 6 6 THR A 141 GLY A 152 1 12 HELIX 7 7 GLY A 152 GLY A 163 1 12 HELIX 8 8 ALA A 168 ILE A 174 1 7 HELIX 9 9 ASP A 182 ASP A 184 5 3 HELIX 10 10 LYS A 185 ALA A 199 1 15 HELIX 11 11 PRO A 201 ILE A 230 1 30 SHEET 1 A 6 VAL A 5 HIS A 10 0 SHEET 2 A 6 VAL A 13 LEU A 18 -1 O THR A 17 N LEU A 6 SHEET 3 A 6 ALA A 50 GLY A 55 1 O ILE A 52 N ILE A 16 SHEET 4 A 6 LEU A 99 ALA A 102 1 O VAL A 100 N ILE A 51 SHEET 5 A 6 ILE A 120 GLY A 123 1 O ILE A 120 N MSE A 101 SHEET 6 A 6 HIS A 179 LEU A 180 1 O HIS A 179 N GLY A 123 SHEET 1 B 4 ALA A 60 SER A 62 0 SHEET 2 B 4 THR A 106 ALA A 108 1 O THR A 106 N SER A 62 SHEET 3 B 4 ARG A 128 GLY A 130 1 O ARG A 128 N ALA A 107 SHEET 4 B 4 LEU A 165 GLU A 167 -1 O MSE A 166 N MSE A 129 LINK C PRO A 30 N MSE A 31 1555 1555 1.34 LINK C MSE A 31 N ARG A 32 1555 1555 1.33 LINK C ILE A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N THR A 54 1555 1555 1.30 LINK C VAL A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ALA A 102 1555 1555 1.35 LINK C ARG A 128 N MSE A 129 1555 1555 1.34 LINK C MSE A 129 N GLY A 130 1555 1555 1.31 LINK C ILE A 146 N MSE A 147 1555 1555 1.32 LINK C MSE A 147 N ASN A 148 1555 1555 1.33 LINK C ALA A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N LEU A 151 1555 1555 1.33 LINK C GLY A 152 N MSE A 153 1555 1555 1.35 LINK C MSE A 153 N SER A 154 1555 1555 1.34 LINK C LEU A 165 N MSE A 166 1555 1555 1.32 LINK C MSE A 166 N GLU A 167 1555 1555 1.34 LINK C ALA A 204 N MSE A 205 1555 1555 1.35 LINK C MSE A 205 N ARG A 206 1555 1555 1.32 LINK C GLU A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N THR A 216 1555 1555 1.35 CRYST1 118.481 118.481 38.932 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008440 0.004873 0.000000 0.00000 SCALE2 0.000000 0.009746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025686 0.00000