HEADER VIRAL PROTEIN 25-APR-13 4KDO TITLE CRYSTAL STRUCTURE OF THE HEMAGGLUTININ OF FERRET-TRANSMISSIBLE H5N1 TITLE 2 VIRUS IN COMPLEX WITH HUMAN RECEPTOR ANALOG LSTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: RESIDUES 17-337; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ; COMPND 9 CHAIN: B, D, F; COMPND 10 FRAGMENT: RESIDUES 347-521; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 284218; SOURCE 4 STRAIN: (A/VIET NAM/1203/2004(H5N1)); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 284218; SOURCE 11 STRAIN: (A/VIET NAM/1203/2004(H5N1)); SOURCE 12 GENE: HA; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HOMOTRIMER, VIRUS ATTACHMENT AND MEMBRANE FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LU,Y.SHI,W.ZHANG,Y.ZHANG,J.QI,G.F.GAO REVDAT 4 29-JUL-20 4KDO 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 29-OCT-14 4KDO 1 TITLE REVDAT 2 04-SEP-13 4KDO 1 JRNL REVDAT 1 24-JUL-13 4KDO 0 JRNL AUTH X.LU,Y.SHI,W.ZHANG,Y.ZHANG,J.QI,G.F.GAO JRNL TITL STRUCTURE AND RECEPTOR-BINDING PROPERTIES OF AN AIRBORNE JRNL TITL 2 TRANSMISSIBLE AVIAN INFLUENZA A VIRUS HEMAGGLUTININ H5 JRNL TITL 3 (VN1203MUT). JRNL REF PROTEIN CELL V. 4 502 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23794001 JRNL DOI 10.1007/S13238-013-3906-Z REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 78961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1817 - 7.2528 0.85 2388 127 0.2188 0.2060 REMARK 3 2 7.2528 - 5.7657 0.98 2688 149 0.2344 0.2505 REMARK 3 3 5.7657 - 5.0395 0.95 2652 127 0.2111 0.2548 REMARK 3 4 5.0395 - 4.5799 0.92 2546 138 0.1944 0.2272 REMARK 3 5 4.5799 - 4.2523 0.95 2616 134 0.1924 0.2169 REMARK 3 6 4.2523 - 4.0020 0.97 2674 157 0.2043 0.2405 REMARK 3 7 4.0020 - 3.8018 0.99 2715 135 0.2141 0.2399 REMARK 3 8 3.8018 - 3.6365 0.99 2755 140 0.2252 0.2539 REMARK 3 9 3.6365 - 3.4967 0.99 2710 144 0.2319 0.2871 REMARK 3 10 3.4967 - 3.3761 0.99 2734 153 0.2371 0.2454 REMARK 3 11 3.3761 - 3.2707 0.99 2740 150 0.2405 0.2687 REMARK 3 12 3.2707 - 3.1772 1.00 2729 149 0.2478 0.2913 REMARK 3 13 3.1772 - 3.0936 0.99 2742 168 0.2637 0.3353 REMARK 3 14 3.0936 - 3.0182 1.00 2714 156 0.2771 0.3297 REMARK 3 15 3.0182 - 2.9496 1.00 2744 150 0.2858 0.3331 REMARK 3 16 2.9496 - 2.8869 1.00 2753 126 0.2799 0.3557 REMARK 3 17 2.8869 - 2.8292 1.00 2733 153 0.2733 0.3051 REMARK 3 18 2.8292 - 2.7758 1.00 2753 115 0.2684 0.3323 REMARK 3 19 2.7758 - 2.7263 1.00 2727 171 0.2670 0.3084 REMARK 3 20 2.7263 - 2.6801 1.00 2716 140 0.2766 0.2859 REMARK 3 21 2.6801 - 2.6369 1.00 2796 138 0.2932 0.3071 REMARK 3 22 2.6369 - 2.5963 1.00 2716 131 0.2874 0.3670 REMARK 3 23 2.5963 - 2.5581 1.00 2801 141 0.2947 0.3161 REMARK 3 24 2.5581 - 2.5221 1.00 2715 138 0.3042 0.3235 REMARK 3 25 2.5221 - 2.4880 1.00 2708 175 0.2983 0.3412 REMARK 3 26 2.4880 - 2.4557 1.00 2784 151 0.3277 0.3555 REMARK 3 27 2.4557 - 2.4250 1.00 2730 122 0.3213 0.3794 REMARK 3 28 2.4250 - 2.3958 0.69 1913 91 0.3346 0.4279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 46.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.95650 REMARK 3 B22 (A**2) : -9.06470 REMARK 3 B33 (A**2) : 3.10820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.11780 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 12384 REMARK 3 ANGLE : 1.558 16743 REMARK 3 CHIRALITY : 0.121 1806 REMARK 3 PLANARITY : 0.006 2172 REMARK 3 DIHEDRAL : 19.735 4613 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.3290 27.2366 14.9478 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.2486 REMARK 3 T33: 0.2712 T12: 0.0181 REMARK 3 T13: -0.0111 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.2255 L22: 0.3071 REMARK 3 L33: 0.3664 L12: -0.0851 REMARK 3 L13: -0.0295 L23: -0.1484 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0437 S13: -0.1078 REMARK 3 S21: -0.0625 S22: 0.0003 S23: 0.0489 REMARK 3 S31: 0.1870 S32: 0.0225 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.396 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH6.0 15% W/V REMARK 280 PEG 4,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 122.95650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, B, D, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 398 O HOH D 617 1.81 REMARK 500 OE2 GLU B 498 O HOH B 604 1.92 REMARK 500 O LEU B 336 OG SER F 447 1.98 REMARK 500 O ASN F 406 O HOH F 608 1.99 REMARK 500 OH TYR E 275 O HOH E 557 2.01 REMARK 500 OE2 GLU D 403 O HOH D 603 2.02 REMARK 500 O HOH D 612 O HOH D 616 2.02 REMARK 500 OH TYR E 11 O ILE F 340 2.02 REMARK 500 O ASP E 5 N PHE F 474 2.02 REMARK 500 O HOH A 510 O HOH A 548 2.03 REMARK 500 OG1 THR A 302 O HOH A 527 2.03 REMARK 500 N CYS A 8 O HIS B 359 2.03 REMARK 500 O6 GAL I 2 C3 SIA I 3 2.04 REMARK 500 O ASN C 186 O HOH C 726 2.04 REMARK 500 O HOH C 760 O HOH C 761 2.04 REMARK 500 NE1 TRP B 426 O HOH B 607 2.06 REMARK 500 NH2 ARG E 212 O HOH E 513 2.06 REMARK 500 OE2 GLU B 419 O HOH B 622 2.08 REMARK 500 OE2 GLU D 412 O HOH D 610 2.09 REMARK 500 O ILE C 7 N PHE D 472 2.10 REMARK 500 O HOH A 503 O HOH A 565 2.10 REMARK 500 OE2 GLU E 85 O HOH E 510 2.10 REMARK 500 O HOH C 715 O HOH C 756 2.11 REMARK 500 O3 GAL I 2 O HOH C 729 2.11 REMARK 500 O LYS D 503 N ILE D 507 2.11 REMARK 500 O HOH A 509 O HOH A 567 2.11 REMARK 500 O HOH C 748 O HOH C 779 2.13 REMARK 500 ND2 ASN B 488 O HOH B 623 2.13 REMARK 500 OH TYR C 11 O ILE D 340 2.13 REMARK 500 O HOH C 765 O HOH C 770 2.13 REMARK 500 NZ LYS E 39 O ASN E 313 2.13 REMARK 500 O HOH E 545 O HOH E 561 2.14 REMARK 500 OE1 GLU E 190 O HOH E 527 2.14 REMARK 500 NH1 ARG D 501 OG SER F 508 2.15 REMARK 500 C6 GAL I 2 C2 SIA I 3 2.16 REMARK 500 NZ LYS A 39 O ASN A 313 2.16 REMARK 500 OD1 ASP D 462 OH TYR D 493 2.17 REMARK 500 O PRO C 215 O HOH C 775 2.18 REMARK 500 O HOH F 603 O HOH F 611 2.18 REMARK 500 O ARG A 57 O HOH A 525 2.18 REMARK 500 O HOH E 519 O HOH E 547 2.18 REMARK 500 OD1 ASP B 462 OH TYR B 493 2.19 REMARK 500 O ARG D 504 N SER D 508 2.19 REMARK 500 NZ LYS E 157 O HOH E 533 2.19 REMARK 500 O THR A 17 O HOH A 575 2.19 REMARK 500 OD1 ASN B 384 O HOH B 619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 142 OG SER C 132 1556 2.10 REMARK 500 OD2 ASP C 58 OE1 GLU E 73 1655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN F 429 CG ASN F 429 ND2 -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 CB - CG - CD ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 66 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 GLU A 73 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU A 73 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 PHE A 74 C - N - CA ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 57 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG C 57 NE - CZ - NH1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG C 57 NE - CZ - NH2 ANGL. DEV. = 8.7 DEGREES REMARK 500 LEU C 66 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG C 149 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 212 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG C 212 NE - CZ - NH1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG C 212 NE - CZ - NH2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG E 57 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG E 57 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 LEU E 66 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG E 149 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG E 149 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG E 212 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG E 212 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 PRO E 325 C - N - CA ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 152.69 -39.74 REMARK 500 ARG A 57 -89.53 -86.31 REMARK 500 ASN A 76 103.32 4.96 REMARK 500 ASP A 92 -113.70 -111.46 REMARK 500 SER A 124 -9.91 -59.82 REMARK 500 TYR A 141 -62.47 -107.74 REMARK 500 SER A 146 -156.08 -132.81 REMARK 500 ASP A 158 -124.37 56.66 REMARK 500 THR A 208 -32.99 -136.64 REMARK 500 GLU A 255 -52.58 -122.93 REMARK 500 SER A 266 -131.16 -135.66 REMARK 500 SER A 292 -28.76 -156.65 REMARK 500 HIS A 299 139.90 -170.94 REMARK 500 ARG C 57 -85.18 -86.93 REMARK 500 PHE C 74 99.41 -33.98 REMARK 500 ASP C 92 -111.79 -113.71 REMARK 500 TYR C 141 -98.95 -113.42 REMARK 500 GLN C 142 38.39 -91.43 REMARK 500 SER C 146 -156.23 -129.65 REMARK 500 ASP C 158 -127.90 58.46 REMARK 500 THR C 208 -33.59 -130.07 REMARK 500 GLU C 255 -52.34 -126.42 REMARK 500 SER C 266 -126.90 -137.63 REMARK 500 SER C 292 -28.13 -155.08 REMARK 500 HIS C 299 137.19 -175.23 REMARK 500 ARG E 57 -87.20 -85.88 REMARK 500 PHE E 74 101.58 -13.10 REMARK 500 ASN E 76 83.03 -64.25 REMARK 500 ASP E 92 -114.43 -111.50 REMARK 500 GLN E 142 71.33 -153.10 REMARK 500 SER E 146 -157.27 -128.21 REMARK 500 ASP E 158 -125.37 54.00 REMARK 500 THR E 208 -33.24 -131.83 REMARK 500 GLU E 255 -51.86 -127.74 REMARK 500 SER E 266 -131.70 -137.42 REMARK 500 SER E 292 -26.42 -157.99 REMARK 500 HIS E 299 138.16 -171.96 REMARK 500 ALA B 339 -78.11 -87.73 REMARK 500 ASN B 362 -151.25 -121.22 REMARK 500 ARG B 461 -126.90 43.73 REMARK 500 HIS B 476 -165.17 -113.56 REMARK 500 ARG B 504 -82.70 -45.92 REMARK 500 GLU B 505 -15.20 -46.08 REMARK 500 GLU B 506 -71.48 -67.82 REMARK 500 SER B 508 83.07 -57.96 REMARK 500 ALA D 339 -76.98 -88.52 REMARK 500 ASN D 362 -151.10 -124.85 REMARK 500 ARG D 461 -128.75 44.84 REMARK 500 HIS D 476 -165.86 -113.50 REMARK 500 ARG D 504 -76.03 -54.01 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 75 ASN A 76 147.21 REMARK 500 GLN C 4 ASP C 5 -147.16 REMARK 500 GLY C 143 LYS C 144 -145.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE GLYCAN COMPONENT REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG C 601 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE DBREF 4KDO A 5 325 UNP Q6DQ33 Q6DQ33_9INFA 17 337 DBREF 4KDO C 5 325 UNP Q6DQ33 Q6DQ33_9INFA 17 337 DBREF 4KDO E 5 325 UNP Q6DQ33 Q6DQ33_9INFA 17 337 DBREF 4KDO B 335 509 UNP Q6DQ33 Q6DQ33_9INFA 347 521 DBREF 4KDO D 335 509 UNP Q6DQ33 Q6DQ33_9INFA 347 521 DBREF 4KDO F 335 509 UNP Q6DQ33 Q6DQ33_9INFA 347 521 SEQADV 4KDO GLN A 4 UNP Q6DQ33 EXPRESSION TAG SEQADV 4KDO ASP A 158 UNP Q6DQ33 ASN 170 ENGINEERED MUTATION SEQADV 4KDO LYS A 224 UNP Q6DQ33 ASN 236 ENGINEERED MUTATION SEQADV 4KDO LEU A 226 UNP Q6DQ33 GLN 238 ENGINEERED MUTATION SEQADV 4KDO ILE A 319 UNP Q6DQ33 THR 331 ENGINEERED MUTATION SEQADV 4KDO GLN C 4 UNP Q6DQ33 EXPRESSION TAG SEQADV 4KDO ASP C 158 UNP Q6DQ33 ASN 170 ENGINEERED MUTATION SEQADV 4KDO LYS C 224 UNP Q6DQ33 ASN 236 ENGINEERED MUTATION SEQADV 4KDO LEU C 226 UNP Q6DQ33 GLN 238 ENGINEERED MUTATION SEQADV 4KDO ILE C 319 UNP Q6DQ33 THR 331 ENGINEERED MUTATION SEQADV 4KDO GLN E 4 UNP Q6DQ33 EXPRESSION TAG SEQADV 4KDO ASP E 158 UNP Q6DQ33 ASN 170 ENGINEERED MUTATION SEQADV 4KDO LYS E 224 UNP Q6DQ33 ASN 236 ENGINEERED MUTATION SEQADV 4KDO LEU E 226 UNP Q6DQ33 GLN 238 ENGINEERED MUTATION SEQADV 4KDO ILE E 319 UNP Q6DQ33 THR 331 ENGINEERED MUTATION SEQRES 1 A 322 GLN ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 A 322 THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR SEQRES 3 A 322 VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS HIS ASN SEQRES 4 A 322 GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE SEQRES 5 A 322 LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN SEQRES 6 A 322 PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER SEQRES 7 A 322 TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS SEQRES 8 A 322 TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS SEQRES 9 A 322 LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE SEQRES 10 A 322 ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU SEQRES 11 A 322 GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SER SEQRES 12 A 322 PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASP SER SEQRES 13 A 322 THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN SEQRES 14 A 322 GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO SEQRES 15 A 322 ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO SEQRES 16 A 322 THR THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN SEQRES 17 A 322 ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL LYS SEQRES 18 A 322 GLY LEU SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU SEQRES 19 A 322 LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN SEQRES 20 A 322 PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS SEQRES 21 A 322 GLY ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY SEQRES 22 A 322 ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE SEQRES 23 A 322 ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR SEQRES 24 A 322 ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU SEQRES 25 A 322 VAL LEU ALA ILE GLY LEU ARG ASN SER PRO SEQRES 1 C 322 GLN ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 C 322 THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR SEQRES 3 C 322 VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS HIS ASN SEQRES 4 C 322 GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE SEQRES 5 C 322 LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN SEQRES 6 C 322 PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER SEQRES 7 C 322 TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS SEQRES 8 C 322 TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS SEQRES 9 C 322 LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE SEQRES 10 C 322 ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU SEQRES 11 C 322 GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SER SEQRES 12 C 322 PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASP SER SEQRES 13 C 322 THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN SEQRES 14 C 322 GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO SEQRES 15 C 322 ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO SEQRES 16 C 322 THR THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN SEQRES 17 C 322 ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL LYS SEQRES 18 C 322 GLY LEU SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU SEQRES 19 C 322 LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN SEQRES 20 C 322 PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS SEQRES 21 C 322 GLY ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY SEQRES 22 C 322 ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE SEQRES 23 C 322 ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR SEQRES 24 C 322 ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU SEQRES 25 C 322 VAL LEU ALA ILE GLY LEU ARG ASN SER PRO SEQRES 1 E 322 GLN ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 E 322 THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR SEQRES 3 E 322 VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS HIS ASN SEQRES 4 E 322 GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE SEQRES 5 E 322 LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN SEQRES 6 E 322 PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER SEQRES 7 E 322 TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS SEQRES 8 E 322 TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS SEQRES 9 E 322 LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE SEQRES 10 E 322 ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU SEQRES 11 E 322 GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SER SEQRES 12 E 322 PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASP SER SEQRES 13 E 322 THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN SEQRES 14 E 322 GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO SEQRES 15 E 322 ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO SEQRES 16 E 322 THR THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN SEQRES 17 E 322 ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL LYS SEQRES 18 E 322 GLY LEU SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU SEQRES 19 E 322 LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN SEQRES 20 E 322 PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS SEQRES 21 E 322 GLY ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY SEQRES 22 E 322 ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE SEQRES 23 E 322 ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR SEQRES 24 E 322 ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU SEQRES 25 E 322 VAL LEU ALA ILE GLY LEU ARG ASN SER PRO SEQRES 1 B 175 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 175 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 175 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 175 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 175 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 175 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 175 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 175 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 175 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 175 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 175 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 175 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 175 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU LYS SEQRES 14 B 175 ARG GLU GLU ILE SER GLY SEQRES 1 D 175 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 D 175 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 D 175 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 D 175 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 D 175 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 D 175 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 D 175 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 D 175 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 D 175 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 D 175 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 D 175 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 D 175 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 D 175 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU LYS SEQRES 14 D 175 ARG GLU GLU ILE SER GLY SEQRES 1 F 175 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 F 175 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 F 175 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 F 175 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 F 175 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 F 175 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 F 175 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 F 175 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 F 175 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 F 175 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 F 175 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 F 175 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 F 175 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU LYS SEQRES 14 F 175 ARG GLU GLU ILE SER GLY MODRES 4KDO ASN C 169 ASN GLYCOSYLATION SITE MODRES 4KDO ASN E 169 ASN GLYCOSYLATION SITE MODRES 4KDO ASN A 169 ASN GLYCOSYLATION SITE MODRES 4KDO ASN C 27 ASN GLYCOSYLATION SITE HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 15 HET GAL I 2 11 HET SIA I 3 20 HET NAG J 1 14 HET NAG J 2 14 HET SIA A 403 21 HET NAG C 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID FORMUL 7 NAG 8(C8 H15 N O6) FORMUL 9 GAL C6 H12 O6 FORMUL 9 SIA 2(C11 H19 N O9) FORMUL 13 HOH *283(H2 O) HELIX 1 1 SER A 60 LEU A 66 1 7 HELIX 2 2 ASP A 101 SER A 110 1 10 HELIX 3 3 PRO A 122 TRP A 126 5 5 HELIX 4 4 ASP A 187 TYR A 195 1 9 HELIX 5 5 SER C 60 LEU C 66 1 7 HELIX 6 6 ASP C 101 SER C 110 1 10 HELIX 7 7 PRO C 122 TRP C 126 5 5 HELIX 8 8 ASP C 187 TYR C 195 1 9 HELIX 9 9 SER E 60 LEU E 66 1 7 HELIX 10 10 ASP E 101 SER E 110 1 10 HELIX 11 11 PRO E 122 TRP E 126 5 5 HELIX 12 12 ASP E 187 TYR E 195 1 9 HELIX 13 13 ASP B 371 LYS B 392 1 22 HELIX 14 14 GLU B 408 ARG B 461 1 54 HELIX 15 15 ASP B 479 ASN B 488 1 10 HELIX 16 16 ASP B 492 SER B 508 1 17 HELIX 17 17 ASP D 371 LYS D 392 1 22 HELIX 18 18 GLU D 408 ARG D 461 1 54 HELIX 19 19 ASP D 479 GLY D 489 1 11 HELIX 20 20 ASP D 492 SER D 508 1 17 HELIX 21 21 ASP F 371 LYS F 392 1 22 HELIX 22 22 GLU F 408 ARG F 461 1 54 HELIX 23 23 ASP F 479 GLY F 489 1 11 HELIX 24 24 ASP F 492 ILE F 507 1 16 SHEET 1 A 5 SER B 366 ALA B 370 0 SHEET 2 A 5 TYR B 356 SER B 361 -1 N TYR B 358 O ALA B 369 SHEET 3 A 5 GLN A 6 TYR A 11 -1 N CYS A 8 O HIS B 359 SHEET 4 A 5 CYS B 471 PHE B 474 -1 O PHE B 472 N ILE A 7 SHEET 5 A 5 ALA B 464 GLU B 466 -1 N LYS B 465 O GLU B 473 SHEET 1 B 2 GLN A 19 VAL A 20 0 SHEET 2 B 2 VAL A 28 THR A 29 -1 O VAL A 28 N VAL A 20 SHEET 1 C 2 ALA A 33 ASP A 35 0 SHEET 2 C 2 VAL A 316 ALA A 318 -1 O LEU A 317 N GLN A 34 SHEET 1 D 3 LEU A 37 GLU A 38 0 SHEET 2 D 3 PHE A 295 HIS A 296 1 O PHE A 295 N GLU A 38 SHEET 3 D 3 LYS A 308 TYR A 309 1 O LYS A 308 N HIS A 296 SHEET 1 E 2 LEU A 45 LEU A 48 0 SHEET 2 E 2 TYR A 275 THR A 280 1 O GLY A 276 N LEU A 45 SHEET 1 F 3 LEU A 54 ILE A 55 0 SHEET 2 F 3 ILE A 83 GLU A 85 1 O VAL A 84 N LEU A 54 SHEET 3 F 3 ILE A 268 LYS A 270 1 O MET A 269 N ILE A 83 SHEET 1 G 5 GLY A 97 PHE A 99 0 SHEET 2 G 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 98 SHEET 3 G 5 ASP A 175 HIS A 184 -1 N LEU A 176 O LEU A 237 SHEET 4 G 5 TYR A 256 VAL A 261 -1 O TYR A 258 N LEU A 177 SHEET 5 G 5 HIS A 114 GLN A 119 -1 N GLU A 116 O LYS A 259 SHEET 1 H 5 GLY A 97 PHE A 99 0 SHEET 2 H 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 98 SHEET 3 H 5 ASP A 175 HIS A 184 -1 N LEU A 176 O LEU A 237 SHEET 4 H 5 PHE A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 H 5 VAL A 151 TRP A 153 -1 N VAL A 152 O ALA A 253 SHEET 1 I 2 HIS A 129 GLU A 130 0 SHEET 2 I 2 ILE A 155 LYS A 156 -1 O ILE A 155 N GLU A 130 SHEET 1 J 2 SER A 136 PRO A 140 0 SHEET 2 J 2 SER A 145 SER A 146 -1 O SER A 146 N SER A 136 SHEET 1 K 4 ILE A 164 ASN A 169 0 SHEET 2 K 4 ALA A 242 SER A 247 -1 O PHE A 245 N ARG A 166 SHEET 3 K 4 ILE A 202 GLY A 205 -1 N SER A 203 O GLU A 246 SHEET 4 K 4 ASN A 210 LEU A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 L 4 GLY A 287 ALA A 288 0 SHEET 2 L 4 CYS A 282 THR A 284 -1 N THR A 284 O GLY A 287 SHEET 3 L 4 ILE A 303 GLY A 304 -1 O ILE A 303 N GLN A 283 SHEET 4 L 4 GLU B 398 ALA B 399 -1 O GLU B 398 N GLY A 304 SHEET 1 M 4 GLY D 347 TRP D 348 0 SHEET 2 M 4 ASP C 5 HIS C 12 1 N TYR C 11 O TRP D 348 SHEET 3 M 4 TYR D 356 SER D 361 -1 O HIS D 359 N CYS C 8 SHEET 4 M 4 SER D 366 ALA D 370 -1 O ALA D 369 N TYR D 358 SHEET 1 N 4 GLY D 347 TRP D 348 0 SHEET 2 N 4 ASP C 5 HIS C 12 1 N TYR C 11 O TRP D 348 SHEET 3 N 4 CYS D 471 PHE D 474 -1 O PHE D 472 N ILE C 7 SHEET 4 N 4 ALA D 464 GLU D 466 -1 N LYS D 465 O GLU D 473 SHEET 1 O 2 GLN C 19 VAL C 20 0 SHEET 2 O 2 VAL C 28 THR C 29 -1 O VAL C 28 N VAL C 20 SHEET 1 P 2 ALA C 33 ASP C 35 0 SHEET 2 P 2 VAL C 316 ALA C 318 -1 O LEU C 317 N GLN C 34 SHEET 1 Q 3 LEU C 37 GLU C 38 0 SHEET 2 Q 3 PHE C 295 HIS C 296 1 O PHE C 295 N GLU C 38 SHEET 3 Q 3 LYS C 308 TYR C 309 1 O LYS C 308 N HIS C 296 SHEET 1 R 2 LEU C 45 LEU C 48 0 SHEET 2 R 2 TYR C 275 THR C 280 1 O GLY C 276 N LEU C 45 SHEET 1 S 3 LEU C 54 ILE C 55 0 SHEET 2 S 3 ILE C 83 GLU C 85 1 O VAL C 84 N LEU C 54 SHEET 3 S 3 ILE C 268 LYS C 270 1 O MET C 269 N ILE C 83 SHEET 1 T 5 GLY C 97 PHE C 99 0 SHEET 2 T 5 ARG C 229 LEU C 237 1 O PHE C 232 N ASP C 98 SHEET 3 T 5 ASP C 175 HIS C 184 -1 N LEU C 176 O LEU C 237 SHEET 4 T 5 TYR C 256 VAL C 261 -1 O TYR C 258 N LEU C 177 SHEET 5 T 5 HIS C 114 GLN C 119 -1 N GLU C 116 O LYS C 259 SHEET 1 U 5 GLY C 97 PHE C 99 0 SHEET 2 U 5 ARG C 229 LEU C 237 1 O PHE C 232 N ASP C 98 SHEET 3 U 5 ASP C 175 HIS C 184 -1 N LEU C 176 O LEU C 237 SHEET 4 U 5 PHE C 251 PRO C 254 -1 O ILE C 252 N GLY C 181 SHEET 5 U 5 VAL C 151 TRP C 153 -1 N VAL C 152 O ALA C 253 SHEET 1 V 2 HIS C 129 GLU C 130 0 SHEET 2 V 2 ILE C 155 LYS C 156 -1 O ILE C 155 N GLU C 130 SHEET 1 W 2 SER C 136 PRO C 140 0 SHEET 2 W 2 SER C 145 SER C 146 -1 O SER C 146 N SER C 136 SHEET 1 X 4 ILE C 164 ASN C 169 0 SHEET 2 X 4 ALA C 242 SER C 247 -1 O PHE C 245 N ARG C 166 SHEET 3 X 4 ILE C 202 GLY C 205 -1 N SER C 203 O GLU C 246 SHEET 4 X 4 ASN C 210 LEU C 213 -1 O GLN C 211 N VAL C 204 SHEET 1 Y 4 GLY C 287 ALA C 288 0 SHEET 2 Y 4 CYS C 282 THR C 284 -1 N THR C 284 O GLY C 287 SHEET 3 Y 4 ILE C 303 GLU C 305 -1 O ILE C 303 N GLN C 283 SHEET 4 Y 4 PHE D 397 ALA D 399 -1 O GLU D 398 N GLY C 304 SHEET 1 Z 5 SER F 366 ALA F 370 0 SHEET 2 Z 5 TYR F 356 SER F 361 -1 N TYR F 358 O ALA F 369 SHEET 3 Z 5 ASP E 5 TYR E 11 -1 N GLY E 10 O GLY F 357 SHEET 4 Z 5 CYS F 471 PHE F 474 -1 O PHE F 474 N ASP E 5 SHEET 5 Z 5 ALA F 464 GLU F 466 -1 N LYS F 465 O GLU F 473 SHEET 1 AA 2 GLN E 19 VAL E 20 0 SHEET 2 AA 2 VAL E 28 THR E 29 -1 O VAL E 28 N VAL E 20 SHEET 1 AB 2 ALA E 33 ASP E 35 0 SHEET 2 AB 2 VAL E 316 ALA E 318 -1 O LEU E 317 N GLN E 34 SHEET 1 AC 3 LEU E 37 GLU E 38 0 SHEET 2 AC 3 PHE E 295 HIS E 296 1 O PHE E 295 N GLU E 38 SHEET 3 AC 3 LYS E 308 TYR E 309 1 O LYS E 308 N HIS E 296 SHEET 1 AD 2 LEU E 45 LEU E 48 0 SHEET 2 AD 2 TYR E 275 THR E 280 1 O GLY E 276 N LEU E 45 SHEET 1 AE 3 LEU E 54 ILE E 55 0 SHEET 2 AE 3 ILE E 83 GLU E 85 1 O VAL E 84 N LEU E 54 SHEET 3 AE 3 ILE E 268 LYS E 270 1 O MET E 269 N ILE E 83 SHEET 1 AF 5 GLY E 97 PHE E 99 0 SHEET 2 AF 5 ARG E 229 LEU E 237 1 O PHE E 232 N ASP E 98 SHEET 3 AF 5 ASP E 175 HIS E 184 -1 N LEU E 176 O LEU E 237 SHEET 4 AF 5 TYR E 256 VAL E 261 -1 O TYR E 258 N LEU E 177 SHEET 5 AF 5 HIS E 114 GLN E 119 -1 N GLU E 116 O LYS E 259 SHEET 1 AG 5 GLY E 97 PHE E 99 0 SHEET 2 AG 5 ARG E 229 LEU E 237 1 O PHE E 232 N ASP E 98 SHEET 3 AG 5 ASP E 175 HIS E 184 -1 N LEU E 176 O LEU E 237 SHEET 4 AG 5 PHE E 251 PRO E 254 -1 O ILE E 252 N GLY E 181 SHEET 5 AG 5 VAL E 151 TRP E 153 -1 N VAL E 152 O ALA E 253 SHEET 1 AH 2 HIS E 129 GLU E 130 0 SHEET 2 AH 2 ILE E 155 LYS E 156 -1 O ILE E 155 N GLU E 130 SHEET 1 AI 2 SER E 136 PRO E 140 0 SHEET 2 AI 2 SER E 145 SER E 146 -1 O SER E 146 N SER E 136 SHEET 1 AJ 4 ILE E 164 ASN E 169 0 SHEET 2 AJ 4 ALA E 242 SER E 247 -1 O PHE E 245 N ARG E 166 SHEET 3 AJ 4 ILE E 202 GLY E 205 -1 N SER E 203 O GLU E 246 SHEET 4 AJ 4 ASN E 210 LEU E 213 -1 O LEU E 213 N ILE E 202 SHEET 1 AK 4 GLY E 287 ALA E 288 0 SHEET 2 AK 4 CYS E 282 THR E 284 -1 N THR E 284 O GLY E 287 SHEET 3 AK 4 ILE E 303 GLU E 305 -1 O ILE E 303 N GLN E 283 SHEET 4 AK 4 PHE F 397 ALA F 399 -1 O GLU F 398 N GLY E 304 SSBOND 1 CYS A 8 CYS B 471 1555 1555 2.07 SSBOND 2 CYS A 46 CYS A 278 1555 1555 2.04 SSBOND 3 CYS A 59 CYS A 71 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 139 1555 1555 2.11 SSBOND 5 CYS A 282 CYS A 306 1555 1555 2.05 SSBOND 6 CYS C 8 CYS D 471 1555 1555 2.01 SSBOND 7 CYS C 46 CYS C 278 1555 1555 2.02 SSBOND 8 CYS C 59 CYS C 71 1555 1555 2.03 SSBOND 9 CYS C 94 CYS C 139 1555 1555 2.10 SSBOND 10 CYS C 282 CYS C 306 1555 1555 2.04 SSBOND 11 CYS E 8 CYS F 471 1555 1555 2.04 SSBOND 12 CYS E 46 CYS E 278 1555 1555 2.03 SSBOND 13 CYS E 59 CYS E 71 1555 1555 2.02 SSBOND 14 CYS E 94 CYS E 139 1555 1555 2.06 SSBOND 15 CYS E 282 CYS E 306 1555 1555 2.04 SSBOND 16 CYS B 478 CYS B 482 1555 1555 2.06 SSBOND 17 CYS D 478 CYS D 482 1555 1555 2.04 SSBOND 18 CYS F 478 CYS F 482 1555 1555 2.05 LINK ND2 ASN A 169 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN C 27 C1 NAG C 601 1555 1555 1.46 LINK ND2 ASN C 169 C1 NAG H 1 1555 1555 1.43 LINK ND2 ASN E 169 C1 NAG J 1 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.43 LINK O4 NAG I 1 C1 GAL I 2 1555 1555 1.45 LINK O6 GAL I 2 C2 SIA I 3 1555 1555 1.44 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 CISPEP 1 VAL B 400 GLY B 401 0 -12.01 CISPEP 2 VAL D 400 GLY D 401 0 -5.26 CISPEP 3 VAL F 400 GLY F 401 0 -5.58 CRYST1 67.257 245.913 69.569 90.00 112.96 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014868 0.000000 0.006299 0.00000 SCALE2 0.000000 0.004066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015611 0.00000