HEADER ACTIN BINDING PROTEIN 25-APR-13 4KEE TITLE CRYSTAL STRUCTURE OF COFILIN MUTANT (COF1-158P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COFILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: COF1, YLL050C, L0596; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN DEPOLYMERIZATION FACTOR, ACTIN BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.KISH-TRIER,B.HAARER,G.CINGOLANI,D.C.AMBERG REVDAT 2 28-FEB-24 4KEE 1 SEQADV REVDAT 1 15-MAY-13 4KEE 0 JRNL AUTH E.KISH-TRIER,B.HAARER,G.CINGOLANI,D.C.AMBERG JRNL TITL CRYSTAL STRUCTURE OF COFILIN MUTANT (COF1-158P) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 20166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9425 - 3.4763 1.00 1426 151 0.1505 0.1783 REMARK 3 2 3.4763 - 2.7650 1.00 1412 151 0.1459 0.1719 REMARK 3 3 2.7650 - 2.4171 0.99 1395 148 0.1435 0.1753 REMARK 3 4 2.4171 - 2.1969 1.00 1406 149 0.1257 0.1627 REMARK 3 5 2.1969 - 2.0398 1.00 1380 146 0.1211 0.1569 REMARK 3 6 2.0398 - 1.9198 0.99 1408 150 0.1186 0.1663 REMARK 3 7 1.9198 - 1.8239 0.98 1390 143 0.1223 0.1882 REMARK 3 8 1.8239 - 1.7446 0.97 1350 138 0.1217 0.1635 REMARK 3 9 1.7446 - 1.6775 0.96 1359 139 0.1198 0.1580 REMARK 3 10 1.6775 - 1.6197 0.96 1333 146 0.1183 0.1834 REMARK 3 11 1.6197 - 1.5691 0.93 1299 137 0.1292 0.1825 REMARK 3 12 1.5691 - 1.5243 0.85 1188 126 0.1382 0.2153 REMARK 3 13 1.5243 - 1.4842 0.73 1004 112 0.1365 0.1881 REMARK 3 14 1.4842 - 1.4480 0.63 888 92 0.1692 0.2584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1058 REMARK 3 ANGLE : 0.835 1429 REMARK 3 CHIRALITY : 0.051 160 REMARK 3 PLANARITY : 0.003 183 REMARK 3 DIHEDRAL : 11.382 385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20869 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.448 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 150MM NACL, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.92600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 73 REMARK 465 ASN A 74 REMARK 465 GLY A 75 REMARK 465 ASN A 76 REMARK 465 GLU A 77 REMARK 465 GLY A 78 REMARK 465 LYS A 79 REMARK 465 ALA A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 HIS A 143 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KED RELATED DB: PDB REMARK 900 RELATED ID: 4KEF RELATED DB: PDB DBREF 4KEE A 2 143 UNP Q03048 COFI_YEAST 2 143 SEQADV 4KEE GLY A 1 UNP Q03048 EXPRESSION TAG SEQADV 4KEE GLU A 80 UNP Q03048 ARG 80 ENGINEERED MUTATION SEQRES 1 A 143 GLY SER ARG SER GLY VAL ALA VAL ALA ASP GLU SER LEU SEQRES 2 A 143 THR ALA PHE ASN ASP LEU LYS LEU GLY LYS LYS TYR LYS SEQRES 3 A 143 PHE ILE LEU PHE GLY LEU ASN ASP ALA LYS THR GLU ILE SEQRES 4 A 143 VAL VAL LYS GLU THR SER THR ASP PRO SER TYR ASP ALA SEQRES 5 A 143 PHE LEU GLU LYS LEU PRO GLU ASN ASP CYS LEU TYR ALA SEQRES 6 A 143 ILE TYR ASP PHE GLU TYR GLU ILE ASN GLY ASN GLU GLY SEQRES 7 A 143 LYS GLU SER LYS ILE VAL PHE PHE THR TRP SER PRO ASP SEQRES 8 A 143 THR ALA PRO VAL ARG SER LYS MET VAL TYR ALA SER SER SEQRES 9 A 143 LYS ASP ALA LEU ARG ARG ALA LEU ASN GLY VAL SER THR SEQRES 10 A 143 ASP VAL GLN GLY THR ASP PHE SER GLU VAL SER TYR ASP SEQRES 11 A 143 SER VAL LEU GLU ARG VAL SER ARG GLY ALA GLY SER HIS FORMUL 2 HOH *172(H2 O) HELIX 1 1 ALA A 9 LYS A 23 1 15 HELIX 2 2 SER A 49 GLU A 55 1 7 HELIX 3 3 PRO A 94 LEU A 112 1 19 HELIX 4 4 SER A 128 GLY A 139 1 12 SHEET 1 A 6 ALA A 7 VAL A 8 0 SHEET 2 A 6 GLU A 38 SER A 45 1 O ILE A 39 N ALA A 7 SHEET 3 A 6 PHE A 27 LEU A 32 -1 N LEU A 29 O GLU A 43 SHEET 4 A 6 LEU A 63 GLU A 70 -1 O TYR A 64 N PHE A 30 SHEET 5 A 6 SER A 81 TRP A 88 -1 O PHE A 86 N ALA A 65 SHEET 6 A 6 THR A 117 GLY A 121 1 O GLY A 121 N THR A 87 CRYST1 28.119 69.852 32.164 90.00 100.39 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035563 0.000000 0.006522 0.00000 SCALE2 0.000000 0.014316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031609 0.00000