HEADER HYDROLASE 28-APR-13 4KG4 TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE DCP2 NUDIX DOMAIN (E198Q TITLE 2 MUTATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA-DECAPPING ENZYME SUBUNIT 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC NUDIX DOMAIN; COMPND 5 SYNONYM: PROTEIN PSU1; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DCP2, N1917, PSU1, YNL118C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-DUET1 KEYWDS NUDIX, MRNA DECAY, MRNA DECAPPING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.AGLIETTI,S.N.FLOOR,J.D.GROSS REVDAT 4 28-FEB-24 4KG4 1 SEQADV REVDAT 3 15-NOV-17 4KG4 1 REMARK REVDAT 2 25-SEP-13 4KG4 1 JRNL REVDAT 1 21-AUG-13 4KG4 0 JRNL AUTH R.A.AGLIETTI,S.N.FLOOR,C.L.MCCLENDON,M.P.JACOBSON,J.D.GROSS JRNL TITL ACTIVE SITE CONFORMATIONAL DYNAMICS ARE COUPLED TO CATALYSIS JRNL TITL 2 IN THE MRNA DECAPPING ENZYME DCP2. JRNL REF STRUCTURE V. 21 1571 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23911090 JRNL DOI 10.1016/J.STR.2013.06.021 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 28350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3498 - 4.3402 0.91 1920 142 0.1762 0.1838 REMARK 3 2 4.3402 - 3.4454 0.93 1916 133 0.1631 0.1792 REMARK 3 3 3.4454 - 3.0099 0.96 1951 151 0.1933 0.2199 REMARK 3 4 3.0099 - 2.7348 0.97 1978 136 0.2031 0.2284 REMARK 3 5 2.7348 - 2.5388 0.97 1957 149 0.1993 0.2287 REMARK 3 6 2.5388 - 2.3891 0.96 1945 139 0.1983 0.2271 REMARK 3 7 2.3891 - 2.2695 0.96 1937 150 0.1859 0.2380 REMARK 3 8 2.2695 - 2.1707 0.96 1944 135 0.1973 0.2146 REMARK 3 9 2.1707 - 2.0871 0.95 1940 141 0.1892 0.2393 REMARK 3 10 2.0871 - 2.0151 0.94 1907 130 0.1893 0.2423 REMARK 3 11 2.0151 - 1.9521 0.92 1855 133 0.1989 0.2797 REMARK 3 12 1.9521 - 1.8963 0.89 1795 130 0.2145 0.2437 REMARK 3 13 1.8963 - 1.8464 0.87 1761 112 0.2152 0.3027 REMARK 3 14 1.8464 - 1.8000 0.82 1625 138 0.2359 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2377 REMARK 3 ANGLE : 1.166 3189 REMARK 3 CHIRALITY : 0.091 337 REMARK 3 PLANARITY : 0.004 408 REMARK 3 DIHEDRAL : 14.662 917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 103:122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8231 18.0077 23.9462 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.2150 REMARK 3 T33: 0.2790 T12: 0.0122 REMARK 3 T13: 0.0471 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 4.4587 L22: 3.6282 REMARK 3 L33: 6.1258 L12: 1.4280 REMARK 3 L13: 0.8655 L23: 2.7444 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.1127 S13: 0.0467 REMARK 3 S21: 0.0063 S22: -0.0615 S23: -0.0300 REMARK 3 S31: 0.0522 S32: -0.2339 S33: 0.1648 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 123:132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1336 23.2216 18.3978 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.2519 REMARK 3 T33: 0.3373 T12: -0.0447 REMARK 3 T13: 0.0924 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.8597 L22: 3.5335 REMARK 3 L33: 6.7985 L12: 0.4233 REMARK 3 L13: -0.5815 L23: 2.2864 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: 0.2239 S13: 0.5449 REMARK 3 S21: -0.9720 S22: 0.0935 S23: -0.2194 REMARK 3 S31: -0.6040 S32: 0.5115 S33: -0.2344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 133:141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3654 11.5369 7.1529 REMARK 3 T TENSOR REMARK 3 T11: 0.4064 T22: 0.5358 REMARK 3 T33: 0.3081 T12: -0.0966 REMARK 3 T13: 0.1410 T23: -0.1264 REMARK 3 L TENSOR REMARK 3 L11: 1.4037 L22: 1.5666 REMARK 3 L33: 5.6846 L12: -0.1593 REMARK 3 L13: 1.7529 L23: 2.1278 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: 0.8231 S13: 0.0185 REMARK 3 S21: -0.6309 S22: 0.2435 S23: -0.3049 REMARK 3 S31: -0.1897 S32: -0.1597 S33: -0.3443 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 142:154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1220 9.8512 15.1496 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.2565 REMARK 3 T33: 0.2411 T12: 0.0106 REMARK 3 T13: 0.0855 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.7230 L22: 2.3026 REMARK 3 L33: 4.8881 L12: 0.5566 REMARK 3 L13: 3.2728 L23: 1.6902 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: 0.0604 S13: -0.2166 REMARK 3 S21: -0.2241 S22: 0.0505 S23: -0.1169 REMARK 3 S31: -0.0902 S32: -0.2076 S33: 0.0498 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 155:192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9752 14.6584 19.9941 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.2542 REMARK 3 T33: 0.2445 T12: -0.0165 REMARK 3 T13: 0.0344 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 6.3512 L22: 2.8230 REMARK 3 L33: 2.1454 L12: -0.7181 REMARK 3 L13: 0.9338 L23: -0.0818 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.0618 S13: -0.0694 REMARK 3 S21: -0.3098 S22: -0.0211 S23: 0.2270 REMARK 3 S31: 0.0734 S32: -0.1473 S33: 0.0947 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 193:200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3121 12.9020 17.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.1981 REMARK 3 T33: 0.2810 T12: 0.0290 REMARK 3 T13: 0.0549 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 6.2839 L22: 9.1338 REMARK 3 L33: 4.6965 L12: -3.1832 REMARK 3 L13: -4.6854 L23: 0.3537 REMARK 3 S TENSOR REMARK 3 S11: 0.3553 S12: 0.1125 S13: 0.5170 REMARK 3 S21: -0.3280 S22: -0.2345 S23: -0.1232 REMARK 3 S31: -0.4343 S32: 0.0556 S33: 0.0420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 201:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6910 24.6346 29.6718 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.2483 REMARK 3 T33: 0.3065 T12: -0.0086 REMARK 3 T13: 0.0043 T23: -0.0981 REMARK 3 L TENSOR REMARK 3 L11: 6.7543 L22: 6.8912 REMARK 3 L33: 5.6496 L12: -3.9140 REMARK 3 L13: -2.8918 L23: 2.7152 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: -0.5274 S13: 0.6140 REMARK 3 S21: 0.0521 S22: 0.1519 S23: -0.1307 REMARK 3 S31: -0.4285 S32: -0.0222 S33: -0.0508 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 213:227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7197 30.2501 21.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.3671 T22: 0.2245 REMARK 3 T33: 0.5131 T12: -0.0285 REMARK 3 T13: 0.0363 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 6.6941 L22: 4.8077 REMARK 3 L33: 4.7553 L12: 2.2798 REMARK 3 L13: 0.6288 L23: -0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.3602 S12: 0.2168 S13: 1.1914 REMARK 3 S21: -0.8154 S22: -0.0458 S23: 0.5442 REMARK 3 S31: -1.0944 S32: 0.1350 S33: 0.4197 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 228:243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1790 21.9896 29.8411 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.4266 REMARK 3 T33: 0.3845 T12: 0.0141 REMARK 3 T13: 0.0992 T23: -0.1561 REMARK 3 L TENSOR REMARK 3 L11: 6.1905 L22: 7.8451 REMARK 3 L33: 6.7481 L12: 2.0417 REMARK 3 L13: -0.6754 L23: -5.5807 REMARK 3 S TENSOR REMARK 3 S11: -0.1251 S12: -0.4996 S13: 0.4101 REMARK 3 S21: 0.8817 S22: 0.2487 S23: 0.6644 REMARK 3 S31: -0.5413 S32: -1.4278 S33: -0.1258 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 101:123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3505 27.9256 50.7003 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.1047 REMARK 3 T33: 0.1360 T12: 0.0083 REMARK 3 T13: 0.0154 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 6.3536 L22: 2.3520 REMARK 3 L33: 3.5043 L12: 1.8512 REMARK 3 L13: -1.7286 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.1885 S13: -0.2771 REMARK 3 S21: 0.0708 S22: 0.1239 S23: 0.0188 REMARK 3 S31: -0.1411 S32: -0.0730 S33: -0.0788 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 124:131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9984 35.7636 42.0220 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.3348 REMARK 3 T33: 0.2003 T12: 0.0127 REMARK 3 T13: -0.0515 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 3.4482 L22: 6.6723 REMARK 3 L33: 2.3769 L12: -2.3059 REMARK 3 L13: 2.7967 L23: -2.6154 REMARK 3 S TENSOR REMARK 3 S11: -0.1224 S12: 0.6386 S13: 0.0630 REMARK 3 S21: -0.0063 S22: 0.4329 S23: 0.6033 REMARK 3 S31: -0.6581 S32: -0.9800 S33: -0.3538 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 132:192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3499 22.6329 50.1543 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.2058 REMARK 3 T33: 0.2854 T12: -0.0309 REMARK 3 T13: -0.0195 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 4.2573 L22: 3.8781 REMARK 3 L33: 4.1204 L12: -0.7214 REMARK 3 L13: -0.7853 L23: 0.5831 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: -0.0120 S13: -0.1508 REMARK 3 S21: -0.0702 S22: 0.0382 S23: 0.3622 REMARK 3 S31: 0.1681 S32: -0.4081 S33: -0.0852 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESID 193:198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8874 24.1788 34.1218 REMARK 3 T TENSOR REMARK 3 T11: 0.4184 T22: 0.4131 REMARK 3 T33: 0.4466 T12: -0.0682 REMARK 3 T13: -0.0188 T23: -0.1282 REMARK 3 L TENSOR REMARK 3 L11: 5.2694 L22: 9.9235 REMARK 3 L33: 5.3896 L12: -4.8739 REMARK 3 L13: 4.9975 L23: -2.7456 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.7426 S13: 0.0078 REMARK 3 S21: 1.5985 S22: 0.0179 S23: 0.4510 REMARK 3 S31: 0.2117 S32: -0.2277 S33: 0.0436 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESID 199:211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3076 33.2445 46.4708 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1558 REMARK 3 T33: 0.1638 T12: -0.0535 REMARK 3 T13: 0.0731 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 5.9440 L22: 5.7639 REMARK 3 L33: 2.5354 L12: 2.5928 REMARK 3 L13: 0.2114 L23: 1.1275 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.0873 S13: 0.0696 REMARK 3 S21: -0.1956 S22: 0.1475 S23: -0.0926 REMARK 3 S31: -0.4776 S32: 0.3790 S33: -0.1769 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESID 212:227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5847 42.3679 50.1439 REMARK 3 T TENSOR REMARK 3 T11: 0.6672 T22: 0.3181 REMARK 3 T33: 0.5400 T12: 0.0178 REMARK 3 T13: -0.0226 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.6401 L22: 1.7637 REMARK 3 L33: 9.2632 L12: -2.3271 REMARK 3 L13: 0.8851 L23: -0.6776 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: 0.0081 S13: 1.4148 REMARK 3 S21: 0.3738 S22: -0.1680 S23: -0.2462 REMARK 3 S31: -1.1546 S32: 0.6173 S33: 0.3262 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESID 228:241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5842 29.1069 63.1352 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.3487 REMARK 3 T33: 0.3448 T12: -0.0888 REMARK 3 T13: -0.0580 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 6.0014 L22: 4.8162 REMARK 3 L33: 1.2750 L12: -3.7603 REMARK 3 L13: 2.3537 L23: -2.4051 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -1.4111 S13: 0.0764 REMARK 3 S21: 1.0177 S22: 0.1467 S23: -0.5038 REMARK 3 S31: -0.2001 S32: -0.3502 S33: -0.1240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM HEPES, 1 MM DTT, 50 MM NACL, 100 REMARK 280 MM NA2SO4, 0.25 M NA ACETATE, 20% PEG 3350, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.90200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 100 REMARK 465 LYS A 101 REMARK 465 SER A 102 REMARK 465 TYR A 215 REMARK 465 LYS A 216 REMARK 465 SER A 217 REMARK 465 GLU A 244 REMARK 465 ASP A 245 REMARK 465 LYS B 100 REMARK 465 LYS B 242 REMARK 465 ASN B 243 REMARK 465 GLU B 244 REMARK 465 ASP B 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 223 -47.02 69.27 REMARK 500 LYS B 138 103.53 0.72 REMARK 500 LYS B 212 32.13 -87.62 REMARK 500 TYR B 215 -75.55 85.90 REMARK 500 SER B 217 74.55 -157.60 REMARK 500 LEU B 223 -57.84 76.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6E RELATED DB: PDB REMARK 900 THE WILD-TYPE DOMAIN REMARK 900 RELATED ID: 4KG3 RELATED DB: PDB REMARK 900 THE E153Q MUTATION OF THIS DOMAIN, IN COMPLEX WITH MG DBREF 4KG4 A 100 245 UNP P53550 DCP2_YEAST 100 245 DBREF 4KG4 B 100 245 UNP P53550 DCP2_YEAST 100 245 SEQADV 4KG4 GLN A 198 UNP P53550 GLU 198 ENGINEERED MUTATION SEQADV 4KG4 GLN B 198 UNP P53550 GLU 198 ENGINEERED MUTATION SEQRES 1 A 146 LYS LYS SER ILE PRO VAL ARG GLY ALA ALA ILE PHE ASN SEQRES 2 A 146 GLU ASN LEU SER LYS ILE LEU LEU VAL GLN GLY THR GLU SEQRES 3 A 146 SER ASP SER TRP SER PHE PRO ARG GLY LYS ILE SER LYS SEQRES 4 A 146 ASP GLU ASN ASP ILE ASP CYS CYS ILE ARG GLU VAL LYS SEQRES 5 A 146 GLU GLU ILE GLY PHE ASP LEU THR ASP TYR ILE ASP ASP SEQRES 6 A 146 ASN GLN PHE ILE GLU ARG ASN ILE GLN GLY LYS ASN TYR SEQRES 7 A 146 LYS ILE PHE LEU ILE SER GLY VAL SER GLU VAL PHE ASN SEQRES 8 A 146 PHE LYS PRO GLN VAL ARG ASN GLN ILE ASP LYS ILE GLU SEQRES 9 A 146 TRP PHE ASP PHE LYS LYS ILE SER LYS THR MET TYR LYS SEQRES 10 A 146 SER ASN ILE LYS TYR TYR LEU ILE ASN SER MET MET ARG SEQRES 11 A 146 PRO LEU SER MET TRP LEU ARG HIS GLN ARG GLN ILE LYS SEQRES 12 A 146 ASN GLU ASP SEQRES 1 B 146 LYS LYS SER ILE PRO VAL ARG GLY ALA ALA ILE PHE ASN SEQRES 2 B 146 GLU ASN LEU SER LYS ILE LEU LEU VAL GLN GLY THR GLU SEQRES 3 B 146 SER ASP SER TRP SER PHE PRO ARG GLY LYS ILE SER LYS SEQRES 4 B 146 ASP GLU ASN ASP ILE ASP CYS CYS ILE ARG GLU VAL LYS SEQRES 5 B 146 GLU GLU ILE GLY PHE ASP LEU THR ASP TYR ILE ASP ASP SEQRES 6 B 146 ASN GLN PHE ILE GLU ARG ASN ILE GLN GLY LYS ASN TYR SEQRES 7 B 146 LYS ILE PHE LEU ILE SER GLY VAL SER GLU VAL PHE ASN SEQRES 8 B 146 PHE LYS PRO GLN VAL ARG ASN GLN ILE ASP LYS ILE GLU SEQRES 9 B 146 TRP PHE ASP PHE LYS LYS ILE SER LYS THR MET TYR LYS SEQRES 10 B 146 SER ASN ILE LYS TYR TYR LEU ILE ASN SER MET MET ARG SEQRES 11 B 146 PRO LEU SER MET TRP LEU ARG HIS GLN ARG GLN ILE LYS SEQRES 12 B 146 ASN GLU ASP FORMUL 3 HOH *128(H2 O) HELIX 1 1 ASN A 141 GLY A 155 1 15 HELIX 2 2 VAL A 195 ILE A 199 5 5 HELIX 3 3 PHE A 207 SER A 211 1 5 HELIX 4 4 ILE A 224 SER A 226 5 3 HELIX 5 5 MET A 227 LYS A 242 1 16 HELIX 6 6 ASN B 141 GLY B 155 1 15 HELIX 7 7 LYS B 208 LYS B 212 5 5 HELIX 8 8 LEU B 223 SER B 226 5 4 HELIX 9 9 MET B 227 ILE B 241 1 15 SHEET 1 A 4 ARG A 133 LYS A 135 0 SHEET 2 A 4 VAL A 105 ASN A 112 -1 N ARG A 106 O GLY A 134 SHEET 3 A 4 LYS A 175 VAL A 185 1 O ASN A 176 N VAL A 105 SHEET 4 A 4 PHE A 167 ILE A 172 -1 N ILE A 168 O ILE A 179 SHEET 1 B 3 TRP A 129 SER A 130 0 SHEET 2 B 3 LYS A 117 GLN A 122 -1 N VAL A 121 O SER A 130 SHEET 3 B 3 LYS A 201 ASP A 206 -1 O GLU A 203 N LEU A 120 SHEET 1 C 5 TRP B 129 SER B 130 0 SHEET 2 C 5 LYS B 117 GLY B 123 -1 N VAL B 121 O SER B 130 SHEET 3 C 5 ILE B 103 ASN B 112 -1 N ILE B 110 O LEU B 119 SHEET 4 C 5 LYS B 175 VAL B 185 1 O ASN B 176 N VAL B 105 SHEET 5 C 5 PHE B 167 ILE B 172 -1 N ARG B 170 O TYR B 177 SHEET 1 D 4 ARG B 133 LYS B 135 0 SHEET 2 D 4 ILE B 103 ASN B 112 -1 N ARG B 106 O GLY B 134 SHEET 3 D 4 LYS B 117 GLY B 123 -1 O LEU B 119 N ILE B 110 SHEET 4 D 4 ILE B 199 ASP B 206 -1 O ASP B 200 N GLN B 122 CISPEP 1 THR A 213 MET A 214 0 13.18 CRYST1 57.352 47.804 60.957 90.00 97.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017436 0.000000 0.002231 0.00000 SCALE2 0.000000 0.020919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016539 0.00000