HEADER OXIDOREDUCTASE 29-APR-13 4KGD TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF PYRUVATE OXIDASE FROM L. TITLE 2 PLANTARUM IN COMPLEX WITH PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 644042; SOURCE 4 STRAIN: JDM1; SOURCE 5 GENE: JDM1_2870, POX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBANION, STRUCTURE ACTIVITY RELATIONSHIP, OXIDATION-REDUCTION, KEYWDS 2 UMPOLUNG, THIAMINE DIPHOSPHATE, REACTION INTERMEDIATE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.NEUMANN,K.TITTMANN REVDAT 6 20-SEP-23 4KGD 1 REMARK REVDAT 5 04-AUG-21 4KGD 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 15-NOV-17 4KGD 1 REMARK REVDAT 3 07-AUG-13 4KGD 1 JRNL REVDAT 2 26-JUN-13 4KGD 1 JRNL REVDAT 1 12-JUN-13 4KGD 0 JRNL AUTH D.MEYER,P.NEUMANN,R.FICNER,K.TITTMANN JRNL TITL OBSERVATION OF A STABLE CARBENE AT THE ACTIVE SITE OF A JRNL TITL 2 THIAMIN ENZYME. JRNL REF NAT.CHEM.BIOL. V. 9 488 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23748673 JRNL DOI 10.1038/NCHEMBIO.1275 REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.127 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.127 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 19361 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 625966 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.092 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.093 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.116 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 14047 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 452270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 225 REMARK 3 SOLVENT ATOMS : 1899 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 11037. REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 8946.4 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 285 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 10708 REMARK 3 NUMBER OF RESTRAINTS : 12582 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 310.0 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.037 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 79.00 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 6.000 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.087 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.046 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.105 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT USING REMARK 3 DELU $C_* $N_* $O_* $S_* $P_* REMARK 3 SIMU 0.1 $C_* $N_* $O_* $S_* $P_* REMARK 3 ISOR 0.1 OA1_3001 > LAST REMARK 4 REMARK 4 4KGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979200 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 645341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.380 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4FEE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 200 MM REMARK 280 PHOSPHATE, 0.1 MM THIAMINE DIPHOSPHATE, 1 MM MAGNESIUM CHLORIDE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.64000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.64000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.73500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.64000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.73500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.64000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -248.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.16000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 709 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 804 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 805 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1143 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1494 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 595 REMARK 465 HIS A 596 REMARK 465 GLN A 597 REMARK 465 ILE A 598 REMARK 465 GLY A 599 REMARK 465 GLN A 600 REMARK 465 GLY A 601 REMARK 465 GLY A 602 REMARK 465 PHE A 603 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 594 REMARK 465 GLN B 595 REMARK 465 HIS B 596 REMARK 465 GLN B 597 REMARK 465 ILE B 598 REMARK 465 GLY B 599 REMARK 465 GLN B 600 REMARK 465 GLY B 601 REMARK 465 GLY B 602 REMARK 465 PHE B 603 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1048 O HOH A 1048 4565 2.16 REMARK 500 O HOH B 1109 O HOH B 1109 4565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 283 CB VAL A 283 CG2 -0.151 REMARK 500 ARG B 204 CZ ARG B 204 NH2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48 NH1 - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 50 CG - CD - NE ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 50 NH1 - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLY A 74 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 155 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU A 180 CB - CG - CD ANGL. DEV. = 19.1 DEGREES REMARK 500 GLU A 180 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLN A 200 CB - CG - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 204 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU A 231 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 254 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 VAL A 283 CG1 - CB - CG2 ANGL. DEV. = 10.2 DEGREES REMARK 500 VAL A 283 CA - CB - CG1 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 357 NH1 - CZ - NH2 ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 357 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 365 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 403 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 403 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 524 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 556 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 556 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 566 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 48 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 57 NH1 - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLY B 74 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 LYS B 75 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 83 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 263 -118.04 83.79 REMARK 500 TYR A 287 113.71 -36.68 REMARK 500 SER A 342 152.10 -46.36 REMARK 500 ASP A 393 -159.82 -78.08 REMARK 500 HIS A 510 45.97 70.49 REMARK 500 LEU A 557 -24.92 -140.22 REMARK 500 SER A 559 -30.78 -38.63 REMARK 500 GLN B 122 44.43 36.56 REMARK 500 ASN B 263 -121.14 83.77 REMARK 500 TYR B 287 115.28 -39.43 REMARK 500 ASP B 393 -160.82 -78.20 REMARK 500 HIS B 510 43.06 73.04 REMARK 500 LYS B 554 48.45 -140.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 9 ASN A 10 149.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 48 0.26 SIDE CHAIN REMARK 500 ARG A 156 0.09 SIDE CHAIN REMARK 500 ARG A 224 0.10 SIDE CHAIN REMARK 500 ARG A 254 0.12 SIDE CHAIN REMARK 500 ARG A 556 0.17 SIDE CHAIN REMARK 500 ARG B 48 0.11 SIDE CHAIN REMARK 500 ARG B 50 0.09 SIDE CHAIN REMARK 500 ARG B 155 0.08 SIDE CHAIN REMARK 500 ARG B 156 0.10 SIDE CHAIN REMARK 500 ARG B 204 0.27 SIDE CHAIN REMARK 500 ARG B 224 0.29 SIDE CHAIN REMARK 500 ARG B 254 0.21 SIDE CHAIN REMARK 500 ARG B 357 0.13 SIDE CHAIN REMARK 500 ARG B 556 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 447 OD1 REMARK 620 2 ASN A 474 OD1 90.3 REMARK 620 3 GLN A 476 O 102.5 86.3 REMARK 620 4 TPP A 704 O1A 86.5 175.4 91.1 REMARK 620 5 TPP A 704 O1B 167.5 97.0 88.1 86.6 REMARK 620 6 HOH A 803 O 86.7 86.9 168.6 96.3 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 709 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 452 O REMARK 620 2 GLN A 455 OE1 88.2 REMARK 620 3 HOH A 825 O 57.5 79.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 447 OD1 REMARK 620 2 ASN B 474 OD1 90.5 REMARK 620 3 GLN B 476 O 102.6 85.8 REMARK 620 4 TPP B 703 O1A 86.7 175.9 91.9 REMARK 620 5 TPP B 703 O1B 167.3 96.2 88.7 87.1 REMARK 620 6 HOH B 802 O 86.6 86.4 168.0 96.4 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FEE RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF PYRUVATE OXIDASE IN COMPLEX WITH REMARK 900 REACTION INTERMEDIATE 2-HYDROXYETHYL-THIAMIN DIPHOSPHATE CARBANION- REMARK 900 ENAMINE DBREF 4KGD A 1 603 UNP C6VNC6 C6VNC6_LACPJ 1 603 DBREF 4KGD B 1 603 UNP C6VNC6 C6VNC6_LACPJ 1 603 SEQRES 1 A 603 MET VAL MET LYS GLN THR LYS GLN THR ASN ILE LEU ALA SEQRES 2 A 603 GLY ALA ALA VAL ILE LYS VAL LEU GLU ALA TRP GLY VAL SEQRES 3 A 603 ASP HIS LEU TYR GLY ILE PRO GLY GLY SER ILE ASN SER SEQRES 4 A 603 ILE MET ASP ALA LEU SER ALA GLU ARG ASP ARG ILE HIS SEQRES 5 A 603 TYR ILE GLN VAL ARG HIS GLU GLU VAL GLY ALA MET ALA SEQRES 6 A 603 ALA ALA ALA ASP ALA LYS LEU THR GLY LYS ILE GLY VAL SEQRES 7 A 603 CYS PHE GLY SER ALA GLY PRO GLY GLY THR HIS LEU MET SEQRES 8 A 603 ASN GLY LEU TYR ASP ALA ARG GLU ASP HIS VAL PRO VAL SEQRES 9 A 603 LEU ALA LEU ILE GLY GLN PHE GLY THR THR GLY MET ASN SEQRES 10 A 603 MET ASP THR PHE GLN GLU MET ASN GLU ASN PRO ILE TYR SEQRES 11 A 603 ALA ASP VAL ALA ASP TYR ASN VAL THR ALA VAL ASN ALA SEQRES 12 A 603 ALA THR LEU PRO HIS VAL ILE ASP GLU ALA ILE ARG ARG SEQRES 13 A 603 ALA TYR ALA HIS GLN GLY VAL ALA VAL VAL GLN ILE PRO SEQRES 14 A 603 VAL ASP LEU PRO TRP GLN GLN ILE PRO ALA GLU ASP TRP SEQRES 15 A 603 TYR ALA SER ALA ASN SER TYR GLN THR PRO LEU LEU PRO SEQRES 16 A 603 GLU PRO ASP VAL GLN ALA VAL THR ARG LEU THR GLN THR SEQRES 17 A 603 LEU LEU ALA ALA GLU ARG PRO LEU ILE TYR TYR GLY ILE SEQRES 18 A 603 GLY ALA ARG LYS ALA GLY LYS GLU LEU GLU GLN LEU SER SEQRES 19 A 603 LYS THR LEU LYS ILE PRO LEU MET SER THR TYR PRO ALA SEQRES 20 A 603 LYS GLY ILE VAL ALA ASP ARG TYR PRO ALA TYR LEU GLY SEQRES 21 A 603 SER ALA ASN ARG VAL ALA GLN LYS PRO ALA ASN GLU ALA SEQRES 22 A 603 LEU ALA GLN ALA ASP VAL VAL LEU PHE VAL GLY ASN ASN SEQRES 23 A 603 TYR PRO PHE ALA GLU VAL SER LYS ALA PHE LYS ASN THR SEQRES 24 A 603 ARG TYR PHE LEU GLN ILE ASP ILE ASP PRO ALA LYS LEU SEQRES 25 A 603 GLY LYS ARG HIS LYS THR ASP ILE ALA VAL LEU ALA ASP SEQRES 26 A 603 ALA GLN LYS THR LEU ALA ALA ILE LEU ALA GLN VAL SER SEQRES 27 A 603 GLU ARG GLU SER THR PRO TRP TRP GLN ALA ASN LEU ALA SEQRES 28 A 603 ASN VAL LYS ASN TRP ARG ALA TYR LEU ALA SER LEU GLU SEQRES 29 A 603 ASP LYS GLN GLU GLY PRO LEU GLN ALA TYR GLN VAL LEU SEQRES 30 A 603 ARG ALA VAL ASN LYS ILE ALA GLU PRO ASP ALA ILE TYR SEQRES 31 A 603 SER ILE ASP VAL GLY ASP ILE ASN LEU ASN ALA ASN ARG SEQRES 32 A 603 HIS LEU LYS LEU THR PRO SER ASN ARG HIS ILE THR SER SEQRES 33 A 603 ASN LEU PHE ALA THR MET GLY VAL GLY ILE PRO GLY ALA SEQRES 34 A 603 ILE ALA ALA LYS LEU ASN TYR PRO GLU ARG GLN VAL PHE SEQRES 35 A 603 ASN LEU ALA GLY ASP GLY GLY ALA SER MET THR MET GLN SEQRES 36 A 603 ASP LEU ALA THR GLN VAL GLN TYR HIS LEU PRO VAL ILE SEQRES 37 A 603 ASN VAL VAL PHE THR ASN CYS GLN TYR GLY PHE ILE LYS SEQRES 38 A 603 ASP GLU GLN GLU ASP THR ASN GLN ASN ASP PHE ILE GLY SEQRES 39 A 603 VAL GLU PHE ASN ASP ILE ASP PHE SER LYS ILE ALA ASP SEQRES 40 A 603 GLY VAL HIS MET GLN ALA PHE ARG VAL ASN LYS ILE GLU SEQRES 41 A 603 GLN LEU PRO ASP VAL PHE GLU GLN ALA LYS ALA ILE ALA SEQRES 42 A 603 GLN HIS GLU PRO VAL LEU ILE ASP ALA VAL ILE THR GLY SEQRES 43 A 603 ASP ARG PRO LEU PRO ALA GLU LYS LEU ARG LEU ASP SER SEQRES 44 A 603 ALA MET SER SER ALA ALA ASP ILE GLU ALA PHE LYS GLN SEQRES 45 A 603 ARG TYR GLU ALA GLN ASP LEU GLN PRO LEU SER THR TYR SEQRES 46 A 603 LEU LYS GLN PHE GLY LEU ASP ASP LEU GLN HIS GLN ILE SEQRES 47 A 603 GLY GLN GLY GLY PHE SEQRES 1 B 603 MET VAL MET LYS GLN THR LYS GLN THR ASN ILE LEU ALA SEQRES 2 B 603 GLY ALA ALA VAL ILE LYS VAL LEU GLU ALA TRP GLY VAL SEQRES 3 B 603 ASP HIS LEU TYR GLY ILE PRO GLY GLY SER ILE ASN SER SEQRES 4 B 603 ILE MET ASP ALA LEU SER ALA GLU ARG ASP ARG ILE HIS SEQRES 5 B 603 TYR ILE GLN VAL ARG HIS GLU GLU VAL GLY ALA MET ALA SEQRES 6 B 603 ALA ALA ALA ASP ALA LYS LEU THR GLY LYS ILE GLY VAL SEQRES 7 B 603 CYS PHE GLY SER ALA GLY PRO GLY GLY THR HIS LEU MET SEQRES 8 B 603 ASN GLY LEU TYR ASP ALA ARG GLU ASP HIS VAL PRO VAL SEQRES 9 B 603 LEU ALA LEU ILE GLY GLN PHE GLY THR THR GLY MET ASN SEQRES 10 B 603 MET ASP THR PHE GLN GLU MET ASN GLU ASN PRO ILE TYR SEQRES 11 B 603 ALA ASP VAL ALA ASP TYR ASN VAL THR ALA VAL ASN ALA SEQRES 12 B 603 ALA THR LEU PRO HIS VAL ILE ASP GLU ALA ILE ARG ARG SEQRES 13 B 603 ALA TYR ALA HIS GLN GLY VAL ALA VAL VAL GLN ILE PRO SEQRES 14 B 603 VAL ASP LEU PRO TRP GLN GLN ILE PRO ALA GLU ASP TRP SEQRES 15 B 603 TYR ALA SER ALA ASN SER TYR GLN THR PRO LEU LEU PRO SEQRES 16 B 603 GLU PRO ASP VAL GLN ALA VAL THR ARG LEU THR GLN THR SEQRES 17 B 603 LEU LEU ALA ALA GLU ARG PRO LEU ILE TYR TYR GLY ILE SEQRES 18 B 603 GLY ALA ARG LYS ALA GLY LYS GLU LEU GLU GLN LEU SER SEQRES 19 B 603 LYS THR LEU LYS ILE PRO LEU MET SER THR TYR PRO ALA SEQRES 20 B 603 LYS GLY ILE VAL ALA ASP ARG TYR PRO ALA TYR LEU GLY SEQRES 21 B 603 SER ALA ASN ARG VAL ALA GLN LYS PRO ALA ASN GLU ALA SEQRES 22 B 603 LEU ALA GLN ALA ASP VAL VAL LEU PHE VAL GLY ASN ASN SEQRES 23 B 603 TYR PRO PHE ALA GLU VAL SER LYS ALA PHE LYS ASN THR SEQRES 24 B 603 ARG TYR PHE LEU GLN ILE ASP ILE ASP PRO ALA LYS LEU SEQRES 25 B 603 GLY LYS ARG HIS LYS THR ASP ILE ALA VAL LEU ALA ASP SEQRES 26 B 603 ALA GLN LYS THR LEU ALA ALA ILE LEU ALA GLN VAL SER SEQRES 27 B 603 GLU ARG GLU SER THR PRO TRP TRP GLN ALA ASN LEU ALA SEQRES 28 B 603 ASN VAL LYS ASN TRP ARG ALA TYR LEU ALA SER LEU GLU SEQRES 29 B 603 ASP LYS GLN GLU GLY PRO LEU GLN ALA TYR GLN VAL LEU SEQRES 30 B 603 ARG ALA VAL ASN LYS ILE ALA GLU PRO ASP ALA ILE TYR SEQRES 31 B 603 SER ILE ASP VAL GLY ASP ILE ASN LEU ASN ALA ASN ARG SEQRES 32 B 603 HIS LEU LYS LEU THR PRO SER ASN ARG HIS ILE THR SER SEQRES 33 B 603 ASN LEU PHE ALA THR MET GLY VAL GLY ILE PRO GLY ALA SEQRES 34 B 603 ILE ALA ALA LYS LEU ASN TYR PRO GLU ARG GLN VAL PHE SEQRES 35 B 603 ASN LEU ALA GLY ASP GLY GLY ALA SER MET THR MET GLN SEQRES 36 B 603 ASP LEU ALA THR GLN VAL GLN TYR HIS LEU PRO VAL ILE SEQRES 37 B 603 ASN VAL VAL PHE THR ASN CYS GLN TYR GLY PHE ILE LYS SEQRES 38 B 603 ASP GLU GLN GLU ASP THR ASN GLN ASN ASP PHE ILE GLY SEQRES 39 B 603 VAL GLU PHE ASN ASP ILE ASP PHE SER LYS ILE ALA ASP SEQRES 40 B 603 GLY VAL HIS MET GLN ALA PHE ARG VAL ASN LYS ILE GLU SEQRES 41 B 603 GLN LEU PRO ASP VAL PHE GLU GLN ALA LYS ALA ILE ALA SEQRES 42 B 603 GLN HIS GLU PRO VAL LEU ILE ASP ALA VAL ILE THR GLY SEQRES 43 B 603 ASP ARG PRO LEU PRO ALA GLU LYS LEU ARG LEU ASP SER SEQRES 44 B 603 ALA MET SER SER ALA ALA ASP ILE GLU ALA PHE LYS GLN SEQRES 45 B 603 ARG TYR GLU ALA GLN ASP LEU GLN PRO LEU SER THR TYR SEQRES 46 B 603 LEU LYS GLN PHE GLY LEU ASP ASP LEU GLN HIS GLN ILE SEQRES 47 B 603 GLY GLN GLY GLY PHE HET FAD A 701 53 HET MG A 702 1 HET PO4 A 703 5 HET TPP A 704 26 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET K A 709 1 HET FAD B 701 53 HET MG B 702 1 HET TPP B 703 26 HET PO4 B 704 5 HET GOL B 705 6 HET GOL B 706 6 HET GOL B 707 6 HET GOL B 708 6 HET GOL B 709 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM TPP THIAMINE DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 7 GOL 9(C3 H8 O3) FORMUL 11 K K 1+ FORMUL 21 HOH *1899(H2 O) HELIX 1 1 ALA A 13 TRP A 24 1 12 HELIX 2 2 GLY A 34 SER A 36 5 3 HELIX 3 3 ILE A 37 GLU A 47 1 11 HELIX 4 4 HIS A 58 GLY A 74 1 17 HELIX 5 5 GLY A 84 HIS A 89 1 6 HELIX 6 6 LEU A 90 ASP A 100 1 11 HELIX 7 7 GLU A 126 ALA A 131 5 6 HELIX 8 8 THR A 145 GLN A 161 1 17 HELIX 9 9 ASP A 171 TRP A 174 5 4 HELIX 10 10 SER A 185 TYR A 189 5 5 HELIX 11 11 ASP A 198 ALA A 212 1 15 HELIX 12 12 ILE A 221 ARG A 224 5 4 HELIX 13 13 ALA A 226 LYS A 238 1 13 HELIX 14 14 TYR A 245 LYS A 248 5 4 HELIX 15 15 GLN A 267 ALA A 277 1 11 HELIX 16 16 ASP A 308 LEU A 312 5 5 HELIX 17 17 ASP A 325 GLN A 336 1 12 HELIX 18 18 THR A 343 ASP A 365 1 23 HELIX 19 19 GLN A 372 ALA A 384 1 13 HELIX 20 20 GLY A 395 LEU A 405 1 11 HELIX 21 21 VAL A 424 TYR A 436 1 13 HELIX 22 22 ASP A 447 MET A 454 1 8 HELIX 23 23 ASP A 456 TYR A 463 1 8 HELIX 24 24 TYR A 477 ASN A 488 1 12 HELIX 25 25 ASP A 501 VAL A 509 1 9 HELIX 26 26 LYS A 518 GLU A 520 5 3 HELIX 27 27 GLN A 521 ALA A 533 1 13 HELIX 28 28 SER A 563 GLU A 575 1 13 HELIX 29 29 PRO A 581 PHE A 589 1 9 HELIX 30 30 ALA B 13 TRP B 24 1 12 HELIX 31 31 GLY B 34 SER B 36 5 3 HELIX 32 32 ILE B 37 ALA B 46 1 10 HELIX 33 33 HIS B 58 GLY B 74 1 17 HELIX 34 34 GLY B 84 HIS B 89 1 6 HELIX 35 35 LEU B 90 ASP B 100 1 11 HELIX 36 36 GLU B 126 ALA B 131 1 6 HELIX 37 37 THR B 145 GLN B 161 1 17 HELIX 38 38 ASP B 171 TRP B 174 5 4 HELIX 39 39 SER B 185 TYR B 189 5 5 HELIX 40 40 ASP B 198 ALA B 212 1 15 HELIX 41 41 ILE B 221 ARG B 224 5 4 HELIX 42 42 ALA B 226 LYS B 238 1 13 HELIX 43 43 TYR B 245 LYS B 248 5 4 HELIX 44 44 GLN B 267 ALA B 277 1 11 HELIX 45 45 ASP B 308 LEU B 312 5 5 HELIX 46 46 ASP B 325 ALA B 335 1 11 HELIX 47 47 THR B 343 ASP B 365 1 23 HELIX 48 48 GLN B 372 ALA B 384 1 13 HELIX 49 49 GLY B 395 LEU B 405 1 11 HELIX 50 50 VAL B 424 TYR B 436 1 13 HELIX 51 51 ASP B 447 THR B 453 1 7 HELIX 52 52 ASP B 456 TYR B 463 1 8 HELIX 53 53 TYR B 477 ASN B 488 1 12 HELIX 54 54 ASP B 501 VAL B 509 1 9 HELIX 55 55 LYS B 518 GLU B 520 5 3 HELIX 56 56 GLN B 521 ALA B 533 1 13 HELIX 57 57 SER B 563 GLU B 575 1 13 HELIX 58 58 PRO B 581 PHE B 589 1 9 SHEET 1 A 2 ASN A 10 LEU A 12 0 SHEET 2 A 2 GLN A 176 PRO A 178 -1 O ILE A 177 N ILE A 11 SHEET 1 B 2 HIS A 28 GLY A 31 0 SHEET 2 B 2 HIS A 52 GLN A 55 1 O ILE A 54 N LEU A 29 SHEET 1 C 4 GLY A 77 GLY A 81 0 SHEET 2 C 4 VAL A 104 GLN A 110 1 O LEU A 105 N GLY A 77 SHEET 3 C 4 VAL A 163 PRO A 169 1 O ILE A 168 N ILE A 108 SHEET 4 C 4 TYR A 136 THR A 139 1 N TYR A 136 O VAL A 165 SHEET 1 D 5 LEU A 241 SER A 243 0 SHEET 2 D 5 PRO A 215 TYR A 219 1 N ILE A 217 O MET A 242 SHEET 3 D 5 VAL A 279 VAL A 283 1 O LEU A 281 N TYR A 218 SHEET 4 D 5 TYR A 301 ASP A 306 1 O LEU A 303 N PHE A 282 SHEET 5 D 5 ILE A 320 LEU A 323 1 O VAL A 322 N GLN A 304 SHEET 1 E 6 ARG A 412 ILE A 414 0 SHEET 2 E 6 ILE A 389 ILE A 392 1 N ILE A 392 O ILE A 414 SHEET 3 E 6 VAL A 441 GLY A 446 1 O PHE A 442 N SER A 391 SHEET 4 E 6 ILE A 468 THR A 473 1 O VAL A 470 N ASN A 443 SHEET 5 E 6 VAL A 538 VAL A 543 1 O ALA A 542 N VAL A 471 SHEET 6 E 6 GLN A 512 VAL A 516 1 N VAL A 516 O VAL A 543 SHEET 1 F 2 ASN B 10 LEU B 12 0 SHEET 2 F 2 GLN B 176 PRO B 178 -1 O ILE B 177 N ILE B 11 SHEET 1 G 2 HIS B 28 GLY B 31 0 SHEET 2 G 2 HIS B 52 GLN B 55 1 O ILE B 54 N LEU B 29 SHEET 1 H 4 GLY B 77 GLY B 81 0 SHEET 2 H 4 VAL B 104 GLN B 110 1 O GLY B 109 N GLY B 81 SHEET 3 H 4 VAL B 163 PRO B 169 1 O ILE B 168 N ILE B 108 SHEET 4 H 4 TYR B 136 THR B 139 1 N TYR B 136 O VAL B 165 SHEET 1 I 5 LEU B 241 SER B 243 0 SHEET 2 I 5 PRO B 215 TYR B 219 1 N ILE B 217 O MET B 242 SHEET 3 I 5 VAL B 279 VAL B 283 1 O LEU B 281 N TYR B 218 SHEET 4 I 5 TYR B 301 ASP B 306 1 O LEU B 303 N PHE B 282 SHEET 5 I 5 ILE B 320 LEU B 323 1 O VAL B 322 N GLN B 304 SHEET 1 J 6 ARG B 412 ILE B 414 0 SHEET 2 J 6 ILE B 389 ILE B 392 1 N ILE B 392 O ILE B 414 SHEET 3 J 6 VAL B 441 GLY B 446 1 O PHE B 442 N SER B 391 SHEET 4 J 6 ILE B 468 THR B 473 1 O VAL B 470 N ASN B 443 SHEET 5 J 6 VAL B 538 VAL B 543 1 O ALA B 542 N VAL B 471 SHEET 6 J 6 GLN B 512 VAL B 516 1 N VAL B 516 O VAL B 543 LINK OD1 ASP A 447 MG MG A 702 1555 1555 2.04 LINK O MET A 452 K K A 709 1555 1555 2.80 LINK OE1 GLN A 455 K K A 709 1555 1555 2.70 LINK OD1 ASN A 474 MG MG A 702 1555 1555 2.14 LINK O GLN A 476 MG MG A 702 1555 1555 2.03 LINK MG MG A 702 O1A TPP A 704 1555 1555 2.02 LINK MG MG A 702 O1B TPP A 704 1555 1555 2.11 LINK MG MG A 702 O HOH A 803 1555 1555 2.09 LINK K K A 709 O HOH A 825 1555 1555 2.96 LINK OD1 ASP B 447 MG MG B 702 1555 1555 2.06 LINK OD1 ASN B 474 MG MG B 702 1555 1555 2.12 LINK O GLN B 476 MG MG B 702 1555 1555 2.06 LINK MG MG B 702 O1A TPP B 703 1555 1555 2.01 LINK MG MG B 702 O1B TPP B 703 1555 1555 2.10 LINK MG MG B 702 O HOH B 802 1555 1555 2.14 SITE 1 AC1 35 HIS A 101 PHE A 121 GLY A 220 ILE A 221 SITE 2 AC1 35 GLY A 222 THR A 244 TYR A 245 ALA A 262 SITE 3 AC1 35 ASN A 263 ARG A 264 VAL A 265 GLY A 284 SITE 4 AC1 35 ASN A 285 ASN A 286 TYR A 287 PRO A 288 SITE 5 AC1 35 PHE A 289 ASP A 306 ILE A 307 ASP A 308 SITE 6 AC1 35 LYS A 311 ASP A 325 ALA A 326 ASN A 398 SITE 7 AC1 35 SER A 416 ASN A 417 HOH A 802 HOH A 811 SITE 8 AC1 35 HOH A 847 HOH A1078 HOH A1079 HOH A1184 SITE 9 AC1 35 HOH A1202 HOH A1342 HOH A1485 SITE 1 AC2 5 ASP A 447 ASN A 474 GLN A 476 TPP A 704 SITE 2 AC2 5 HOH A 803 SITE 1 AC3 12 GLY A 34 GLY A 35 SER A 36 SER A 82 SITE 2 AC3 12 PHE A 111 GLN A 122 ILE A 480 TPP A 704 SITE 3 AC3 12 HOH A 912 HOH A1019 HOH A1487 HOH A1598 SITE 1 AC4 27 PRO A 33 GLU A 59 SER A 82 PRO A 85 SITE 2 AC4 27 HIS A 89 GLN A 122 VAL A 394 ASP A 396 SITE 3 AC4 27 ALA A 420 MET A 422 GLY A 446 ASP A 447 SITE 4 AC4 27 GLY A 448 GLY A 449 ASN A 474 GLN A 476 SITE 5 AC4 27 TYR A 477 GLY A 478 PHE A 479 ILE A 480 SITE 6 AC4 27 MG A 702 PO4 A 703 HOH A 803 HOH A 820 SITE 7 AC4 27 HOH A 824 HOH A 846 HOH A1487 SITE 1 AC5 8 ALA A 23 TRP A 24 LYS A 75 TYR A 158 SITE 2 AC5 8 ALA A 186 TYR A 189 HOH A1024 HOH A1421 SITE 1 AC6 9 LYS A 433 PRO A 437 GLU A 438 PRO A 466 SITE 2 AC6 9 ALA A 533 GLN A 534 HOH A1089 HOH A1121 SITE 3 AC6 9 HOH A1373 SITE 1 AC7 5 TRP A 174 THR A 487 GLN A 489 HOH A1291 SITE 2 AC7 5 HOH A1444 SITE 1 AC8 10 ARG A 264 GLU A 483 ASP A 486 GLU A 553 SITE 2 AC8 10 HOH A1029 HOH A1222 HOH A1347 HOH A1483 SITE 3 AC8 10 HOH A1496 HOH A1629 SITE 1 AC9 3 MET A 452 GLN A 455 HOH A 825 SITE 1 BC1 36 HIS B 101 PHE B 121 GLY B 220 ILE B 221 SITE 2 BC1 36 GLY B 222 THR B 244 TYR B 245 PRO B 246 SITE 3 BC1 36 ALA B 262 ASN B 263 ARG B 264 VAL B 265 SITE 4 BC1 36 GLY B 284 ASN B 285 ASN B 286 TYR B 287 SITE 5 BC1 36 PRO B 288 PHE B 289 ASP B 306 ILE B 307 SITE 6 BC1 36 ASP B 308 LYS B 311 ASP B 325 ALA B 326 SITE 7 BC1 36 ASN B 398 SER B 416 ASN B 417 HOH B 801 SITE 8 BC1 36 HOH B 807 HOH B 816 HOH B 819 HOH B1132 SITE 9 BC1 36 HOH B1133 HOH B1336 HOH B1498 HOH B1553 SITE 1 BC2 5 ASP B 447 ASN B 474 GLN B 476 TPP B 703 SITE 2 BC2 5 HOH B 802 SITE 1 BC3 27 PRO B 33 GLU B 59 SER B 82 PRO B 85 SITE 2 BC3 27 HIS B 89 GLN B 122 VAL B 394 ASP B 396 SITE 3 BC3 27 ALA B 420 MET B 422 GLY B 446 ASP B 447 SITE 4 BC3 27 GLY B 448 GLY B 449 ASN B 474 GLN B 476 SITE 5 BC3 27 TYR B 477 GLY B 478 PHE B 479 ILE B 480 SITE 6 BC3 27 MG B 702 PO4 B 704 HOH B 802 HOH B 817 SITE 7 BC3 27 HOH B 821 HOH B 855 HOH B1496 SITE 1 BC4 12 GLY B 34 GLY B 35 SER B 36 SER B 82 SITE 2 BC4 12 PHE B 111 GLN B 122 ILE B 480 TPP B 703 SITE 3 BC4 12 HOH B 873 HOH B1030 HOH B1356 HOH B1496 SITE 1 BC5 8 LYS B 433 PRO B 437 GLU B 438 PRO B 466 SITE 2 BC5 8 ALA B 533 GLN B 534 HOH B1176 HOH B1235 SITE 1 BC6 3 THR B 487 HOH B1306 HOH B1712 SITE 1 BC7 9 HOH A1083 ALA B 569 PHE B 570 ARG B 573 SITE 2 BC7 9 TYR B 574 HOH B 961 HOH B 980 HOH B1187 SITE 3 BC7 9 HOH B1379 SITE 1 BC8 7 PRO B 409 SER B 410 ASN B 411 ARG B 412 SITE 2 BC8 7 TYR B 436 ARG B 439 GOL B 709 SITE 1 BC9 7 PRO B 409 ARG B 412 GOL B 708 HOH B 917 SITE 2 BC9 7 HOH B 939 HOH B 996 HOH B1558 CRYST1 119.280 154.160 165.470 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006043 0.00000