HEADER HYDROLASE 03-MAY-13 4KJD TITLE RATINTESTINAL AP EXPRESSED IN E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTESTINAL-TYPE ALKALINE PHOSPHATASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IAP-1, INTESTINAL ALKALINE PHOSPHATASE 1, INTESTINAL COMPND 5 ALKALINE PHOSPHATASE I, IAP-I; COMPND 6 EC: 3.1.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ALPI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA/BETA FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,R.K.ANUMULA,B.K.LAKSMAIAH REVDAT 3 20-SEP-23 4KJD 1 REMARK SEQADV LINK REVDAT 2 27-NOV-13 4KJD 1 JRNL REVDAT 1 16-OCT-13 4KJD 0 JRNL AUTH K.GHOSH,D.MAZUMDER TAGORE,R.ANUMULA,B.LAKSHMAIAH,P.P.KUMAR, JRNL AUTH 2 S.SINGARAM,T.MATAN,S.KALLIPATTI,S.SELVAM,P.KRISHNAMURTHY, JRNL AUTH 3 M.RAMARAO JRNL TITL CRYSTAL STRUCTURE OF RAT INTESTINAL ALKALINE PHOSPHATASE - JRNL TITL 2 ROLE OF CROWN DOMAIN IN MAMMALIAN ALKALINE PHOSPHATASES. JRNL REF J.STRUCT.BIOL. V. 184 182 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 24076154 JRNL DOI 10.1016/J.JSB.2013.09.017 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 41765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2109 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3054 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1839 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2878 REMARK 3 BIN R VALUE (WORKING SET) : 0.1826 REMARK 3 BIN FREE R VALUE : 0.2057 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.76 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 176 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 0.31270 REMARK 3 B33 (A**2) : 1.05730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.222 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.237 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6335 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8607 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2117 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 155 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 931 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6335 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 837 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7294 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.22 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.22 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NH4CL, 0.1 M MES 6.5, 20 % PEG REMARK 280 MME 2000, VAPOR DIFFUSION, TEMPERATURE 293K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.66050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.86300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.66050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.86300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 3 REMARK 465 HIS A 320 REMARK 465 ALA A 321 REMARK 465 GLY A 322 REMARK 465 PHE A 362 REMARK 465 ALA A 363 REMARK 465 PHE A 364 REMARK 465 GLY A 365 REMARK 465 GLY A 366 REMARK 465 TYR A 367 REMARK 465 GLY A 371 REMARK 465 THR A 372 REMARK 465 SER A 373 REMARK 465 ILE A 374 REMARK 465 PHE A 375 REMARK 465 GLY A 376 REMARK 465 LEU A 377 REMARK 465 ALA A 378 REMARK 465 PRO A 379 REMARK 465 LEU A 380 REMARK 465 ASN A 381 REMARK 465 ALA A 382 REMARK 465 GLN A 383 REMARK 465 ASP A 384 REMARK 465 GLY A 385 REMARK 465 LYS A 386 REMARK 465 SER A 387 REMARK 465 TYR A 388 REMARK 465 THR A 389 REMARK 465 SER A 390 REMARK 465 ILE A 391 REMARK 465 LEU A 392 REMARK 465 TYR A 393 REMARK 465 GLY A 394 REMARK 465 ASN A 395 REMARK 465 GLY A 396 REMARK 465 PRO A 397 REMARK 465 GLY A 398 REMARK 465 TYR A 399 REMARK 465 VAL A 400 REMARK 465 LEU A 401 REMARK 465 ASN A 402 REMARK 465 SER A 403 REMARK 465 GLY A 404 REMARK 465 ASN A 405 REMARK 465 ARG A 406 REMARK 465 PRO A 407 REMARK 465 ASN A 408 REMARK 465 VAL A 409 REMARK 465 THR A 410 REMARK 465 ASP A 411 REMARK 465 ALA A 412 REMARK 465 GLU A 413 REMARK 465 SER A 414 REMARK 465 GLY A 415 REMARK 465 ASP A 416 REMARK 465 VAL A 417 REMARK 465 ASN A 418 REMARK 465 TYR A 419 REMARK 465 LYS A 420 REMARK 465 GLN A 421 REMARK 465 GLN A 422 REMARK 465 ALA A 423 REMARK 465 ALA A 424 REMARK 465 VAL A 425 REMARK 465 PRO A 426 REMARK 465 LEU A 427 REMARK 465 SER A 428 REMARK 465 SER A 429 REMARK 465 GLU A 430 REMARK 465 THR A 431 REMARK 465 GLU A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 VAL B 1 REMARK 465 ILE B 2 REMARK 465 HIS B 320 REMARK 465 ALA B 321 REMARK 465 GLY B 322 REMARK 465 PHE B 362 REMARK 465 ALA B 363 REMARK 465 PHE B 364 REMARK 465 GLY B 365 REMARK 465 GLY B 366 REMARK 465 TYR B 367 REMARK 465 GLY B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 ILE B 374 REMARK 465 PHE B 375 REMARK 465 GLY B 376 REMARK 465 LEU B 377 REMARK 465 ALA B 378 REMARK 465 PRO B 379 REMARK 465 LEU B 380 REMARK 465 ASN B 381 REMARK 465 ALA B 382 REMARK 465 GLN B 383 REMARK 465 ASP B 384 REMARK 465 GLY B 385 REMARK 465 LYS B 386 REMARK 465 SER B 387 REMARK 465 TYR B 388 REMARK 465 THR B 389 REMARK 465 SER B 390 REMARK 465 ILE B 391 REMARK 465 LEU B 392 REMARK 465 TYR B 393 REMARK 465 GLY B 394 REMARK 465 ASN B 395 REMARK 465 GLY B 396 REMARK 465 PRO B 397 REMARK 465 GLY B 398 REMARK 465 TYR B 399 REMARK 465 VAL B 400 REMARK 465 LEU B 401 REMARK 465 ASN B 402 REMARK 465 SER B 403 REMARK 465 GLY B 404 REMARK 465 ASN B 405 REMARK 465 ARG B 406 REMARK 465 PRO B 407 REMARK 465 ASN B 408 REMARK 465 VAL B 409 REMARK 465 THR B 410 REMARK 465 ASP B 411 REMARK 465 ALA B 412 REMARK 465 GLU B 413 REMARK 465 SER B 414 REMARK 465 GLY B 415 REMARK 465 ASP B 416 REMARK 465 VAL B 417 REMARK 465 ASN B 418 REMARK 465 TYR B 419 REMARK 465 LYS B 420 REMARK 465 GLN B 421 REMARK 465 GLN B 422 REMARK 465 ALA B 423 REMARK 465 ALA B 424 REMARK 465 VAL B 425 REMARK 465 PRO B 426 REMARK 465 LEU B 427 REMARK 465 SER B 428 REMARK 465 SER B 429 REMARK 465 GLU B 430 REMARK 465 THR B 431 REMARK 465 ALA B 480 REMARK 465 ASP B 481 REMARK 465 GLU B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 319 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 VAL A 361 CG1 CG2 REMARK 470 HIS A 432 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 436 CG OD1 OD2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ASP B 21 CG OD1 OD2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 HIS B 319 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 361 CG1 CG2 REMARK 470 HIS B 432 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 473 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 272 -116.72 -124.92 REMARK 500 THR B 272 -116.45 -124.42 REMARK 500 ASP B 473 34.34 -88.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 155 OG REMARK 620 2 GLU A 311 OE2 87.9 REMARK 620 3 HOH A 734 O 171.3 98.5 REMARK 620 4 HOH A 735 O 84.6 117.2 97.4 REMARK 620 5 HOH A 736 O 84.0 159.4 88.0 81.0 REMARK 620 6 HOH A 737 O 81.5 91.1 92.5 147.9 68.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 PHE A 269 O 80.9 REMARK 620 3 GLU A 270 OE2 98.0 80.8 REMARK 620 4 ASP A 285 OD1 144.7 133.8 94.9 REMARK 620 5 HOH A 634 O 94.0 87.2 161.5 83.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 155 OG REMARK 620 2 GLU B 311 OE2 93.9 REMARK 620 3 HOH B 704 O 175.8 89.4 REMARK 620 4 HOH B 737 O 88.6 168.5 88.7 REMARK 620 5 HOH B 738 O 93.6 103.3 83.1 87.7 REMARK 620 6 HOH B 739 O 97.0 90.1 85.6 78.4 162.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 216 OE1 REMARK 620 2 PHE B 269 O 81.4 REMARK 620 3 GLU B 270 OE2 93.0 82.0 REMARK 620 4 ASP B 285 OD1 141.2 135.3 102.9 REMARK 620 5 HOH B 609 O 90.9 89.4 169.9 79.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KJG RELATED DB: PDB DBREF 4KJD A 1 482 UNP P15693 PPBI1_RAT 21 502 DBREF 4KJD B 1 482 UNP P15693 PPBI1_RAT 21 502 SEQADV 4KJD HIS A 483 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS A 484 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS A 485 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS A 486 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS A 487 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS A 488 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 483 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 484 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 485 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 486 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 487 UNP P15693 EXPRESSION TAG SEQADV 4KJD HIS B 488 UNP P15693 EXPRESSION TAG SEQRES 1 A 488 VAL ILE PRO VAL GLU GLU GLU ASN PRO VAL PHE TRP ASN SEQRES 2 A 488 GLN LYS ALA LYS GLU ALA LEU ASP VAL ALA LYS LYS LEU SEQRES 3 A 488 GLN PRO ILE GLN THR SER ALA LYS ASN LEU ILE LEU PHE SEQRES 4 A 488 LEU GLY ASP GLY MET GLY VAL PRO THR VAL THR ALA THR SEQRES 5 A 488 ARG ILE LEU LYS GLY GLN LEU GLY GLY HIS LEU GLY PRO SEQRES 6 A 488 GLU THR PRO LEU ALA MET ASP HIS PHE PRO PHE THR ALA SEQRES 7 A 488 LEU SER LYS THR TYR ASN VAL ASP ARG GLN VAL PRO ASP SEQRES 8 A 488 SEP ALA GLY THR ALA THR ALA TYR LEU CYS GLY VAL LYS SEQRES 9 A 488 ALA ASN TYR LYS THR ILE GLY VAL SER ALA ALA ALA ARG SEQRES 10 A 488 PHE ASN GLN CYS ASN SER THR PHE GLY ASN GLU VAL PHE SEQRES 11 A 488 SER VAL MET HIS ARG ALA LYS LYS ALA GLY LYS SER VAL SEQRES 12 A 488 GLY VAL VAL THR THR THR ARG VAL GLN HIS ALA SER PRO SEQRES 13 A 488 ALA GLY THR TYR ALA HIS THR VAL ASN ARG ASP TRP TYR SEQRES 14 A 488 SER ASP ALA ASP MET PRO SER SER ALA LEU GLN GLU GLY SEQRES 15 A 488 CYS LYS ASP ILE ALA THR GLN LEU ILE SER ASN MET ASP SEQRES 16 A 488 ILE ASP VAL ILE LEU GLY GLY GLY ARG LYS PHE MET PHE SEQRES 17 A 488 PRO LYS GLY THR PRO ASP PRO GLU TYR PRO GLY ASP SER SEQRES 18 A 488 ASP GLN SER GLY VAL ARG LEU ASP SER ARG ASN LEU VAL SEQRES 19 A 488 GLU GLU TRP LEU ALA LYS TYR GLN GLY THR ARG TYR VAL SEQRES 20 A 488 TRP ASN ARG GLU GLN LEU MET GLN ALA SER GLN ASP PRO SEQRES 21 A 488 ALA VAL THR ARG LEU MET GLY LEU PHE GLU PRO THR GLU SEQRES 22 A 488 MET LYS TYR ASP VAL ASN ARG ASN ALA SER ALA ASP PRO SEQRES 23 A 488 SER LEU ALA GLU MET THR GLU VAL ALA VAL ARG LEU LEU SEQRES 24 A 488 SER ARG ASN PRO GLN GLY PHE TYR LEU PHE VAL GLU GLY SEQRES 25 A 488 GLY ARG ILE ASP GLN GLY HIS HIS ALA GLY THR ALA TYR SEQRES 26 A 488 LEU ALA LEU THR GLU ALA VAL MET PHE ASP SER ALA ILE SEQRES 27 A 488 GLU LYS ALA SER GLN LEU THR ASN GLU LYS ASP THR LEU SEQRES 28 A 488 THR LEU ILE THR ALA ASP HIS SER HIS VAL PHE ALA PHE SEQRES 29 A 488 GLY GLY TYR THR LEU ARG GLY THR SER ILE PHE GLY LEU SEQRES 30 A 488 ALA PRO LEU ASN ALA GLN ASP GLY LYS SER TYR THR SER SEQRES 31 A 488 ILE LEU TYR GLY ASN GLY PRO GLY TYR VAL LEU ASN SER SEQRES 32 A 488 GLY ASN ARG PRO ASN VAL THR ASP ALA GLU SER GLY ASP SEQRES 33 A 488 VAL ASN TYR LYS GLN GLN ALA ALA VAL PRO LEU SER SER SEQRES 34 A 488 GLU THR HIS GLY GLY GLU ASP VAL ALA ILE PHE ALA ARG SEQRES 35 A 488 GLY PRO GLN ALA HIS LEU VAL HIS GLY VAL GLN GLU GLN SEQRES 36 A 488 ASN TYR ILE ALA HIS VAL MET ALA PHE ALA GLY CYS LEU SEQRES 37 A 488 GLU PRO TYR THR ASP CYS GLY LEU ALA PRO PRO ALA ASP SEQRES 38 A 488 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 488 VAL ILE PRO VAL GLU GLU GLU ASN PRO VAL PHE TRP ASN SEQRES 2 B 488 GLN LYS ALA LYS GLU ALA LEU ASP VAL ALA LYS LYS LEU SEQRES 3 B 488 GLN PRO ILE GLN THR SER ALA LYS ASN LEU ILE LEU PHE SEQRES 4 B 488 LEU GLY ASP GLY MET GLY VAL PRO THR VAL THR ALA THR SEQRES 5 B 488 ARG ILE LEU LYS GLY GLN LEU GLY GLY HIS LEU GLY PRO SEQRES 6 B 488 GLU THR PRO LEU ALA MET ASP HIS PHE PRO PHE THR ALA SEQRES 7 B 488 LEU SER LYS THR TYR ASN VAL ASP ARG GLN VAL PRO ASP SEQRES 8 B 488 SEP ALA GLY THR ALA THR ALA TYR LEU CYS GLY VAL LYS SEQRES 9 B 488 ALA ASN TYR LYS THR ILE GLY VAL SER ALA ALA ALA ARG SEQRES 10 B 488 PHE ASN GLN CYS ASN SER THR PHE GLY ASN GLU VAL PHE SEQRES 11 B 488 SER VAL MET HIS ARG ALA LYS LYS ALA GLY LYS SER VAL SEQRES 12 B 488 GLY VAL VAL THR THR THR ARG VAL GLN HIS ALA SER PRO SEQRES 13 B 488 ALA GLY THR TYR ALA HIS THR VAL ASN ARG ASP TRP TYR SEQRES 14 B 488 SER ASP ALA ASP MET PRO SER SER ALA LEU GLN GLU GLY SEQRES 15 B 488 CYS LYS ASP ILE ALA THR GLN LEU ILE SER ASN MET ASP SEQRES 16 B 488 ILE ASP VAL ILE LEU GLY GLY GLY ARG LYS PHE MET PHE SEQRES 17 B 488 PRO LYS GLY THR PRO ASP PRO GLU TYR PRO GLY ASP SER SEQRES 18 B 488 ASP GLN SER GLY VAL ARG LEU ASP SER ARG ASN LEU VAL SEQRES 19 B 488 GLU GLU TRP LEU ALA LYS TYR GLN GLY THR ARG TYR VAL SEQRES 20 B 488 TRP ASN ARG GLU GLN LEU MET GLN ALA SER GLN ASP PRO SEQRES 21 B 488 ALA VAL THR ARG LEU MET GLY LEU PHE GLU PRO THR GLU SEQRES 22 B 488 MET LYS TYR ASP VAL ASN ARG ASN ALA SER ALA ASP PRO SEQRES 23 B 488 SER LEU ALA GLU MET THR GLU VAL ALA VAL ARG LEU LEU SEQRES 24 B 488 SER ARG ASN PRO GLN GLY PHE TYR LEU PHE VAL GLU GLY SEQRES 25 B 488 GLY ARG ILE ASP GLN GLY HIS HIS ALA GLY THR ALA TYR SEQRES 26 B 488 LEU ALA LEU THR GLU ALA VAL MET PHE ASP SER ALA ILE SEQRES 27 B 488 GLU LYS ALA SER GLN LEU THR ASN GLU LYS ASP THR LEU SEQRES 28 B 488 THR LEU ILE THR ALA ASP HIS SER HIS VAL PHE ALA PHE SEQRES 29 B 488 GLY GLY TYR THR LEU ARG GLY THR SER ILE PHE GLY LEU SEQRES 30 B 488 ALA PRO LEU ASN ALA GLN ASP GLY LYS SER TYR THR SER SEQRES 31 B 488 ILE LEU TYR GLY ASN GLY PRO GLY TYR VAL LEU ASN SER SEQRES 32 B 488 GLY ASN ARG PRO ASN VAL THR ASP ALA GLU SER GLY ASP SEQRES 33 B 488 VAL ASN TYR LYS GLN GLN ALA ALA VAL PRO LEU SER SER SEQRES 34 B 488 GLU THR HIS GLY GLY GLU ASP VAL ALA ILE PHE ALA ARG SEQRES 35 B 488 GLY PRO GLN ALA HIS LEU VAL HIS GLY VAL GLN GLU GLN SEQRES 36 B 488 ASN TYR ILE ALA HIS VAL MET ALA PHE ALA GLY CYS LEU SEQRES 37 B 488 GLU PRO TYR THR ASP CYS GLY LEU ALA PRO PRO ALA ASP SEQRES 38 B 488 GLU HIS HIS HIS HIS HIS HIS MODRES 4KJD SEP A 92 SER PHOSPHOSERINE MODRES 4KJD SEP B 92 SER PHOSPHOSERINE HET SEP A 92 10 HET SEP B 92 10 HET MG A 501 1 HET MG A 502 1 HET GOL A 503 6 HET MG B 501 1 HET MG B 502 1 HET GOL B 503 6 HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 MG 4(MG 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *277(H2 O) HELIX 1 1 VAL A 4 GLU A 7 5 4 HELIX 2 2 ASN A 8 LEU A 26 1 19 HELIX 3 3 GLY A 45 GLY A 60 1 16 HELIX 4 4 ALA A 70 PHE A 74 5 5 HELIX 5 5 ASP A 91 GLY A 102 1 12 HELIX 6 6 GLN A 120 PHE A 125 5 6 HELIX 7 7 SER A 131 ALA A 139 1 9 HELIX 8 8 HIS A 153 GLY A 158 1 6 HELIX 9 9 SER A 170 MET A 174 5 5 HELIX 10 10 PRO A 175 GLU A 181 1 7 HELIX 11 11 ASP A 185 ASN A 193 1 9 HELIX 12 12 GLY A 203 PHE A 208 5 6 HELIX 13 13 ASP A 220 SER A 224 5 5 HELIX 14 14 ASN A 232 ALA A 239 1 8 HELIX 15 15 ASN A 249 ASP A 259 1 11 HELIX 16 16 TYR A 276 ARG A 280 5 5 HELIX 17 17 SER A 287 SER A 300 1 14 HELIX 18 18 ARG A 314 HIS A 319 1 6 HELIX 19 19 ALA A 324 THR A 345 1 22 HELIX 20 20 GLN A 445 VAL A 449 5 5 HELIX 21 21 ASN A 456 GLY A 466 1 11 HELIX 22 22 VAL B 4 GLU B 7 5 4 HELIX 23 23 ASN B 8 LEU B 26 1 19 HELIX 24 24 GLY B 45 GLY B 60 1 16 HELIX 25 25 ALA B 70 PHE B 74 5 5 HELIX 26 26 ASP B 91 GLY B 102 1 12 HELIX 27 27 GLN B 120 PHE B 125 5 6 HELIX 28 28 SER B 131 ALA B 139 1 9 HELIX 29 29 HIS B 153 GLY B 158 1 6 HELIX 30 30 SER B 170 MET B 174 5 5 HELIX 31 31 PRO B 175 GLU B 181 1 7 HELIX 32 32 ASP B 185 ASN B 193 1 9 HELIX 33 33 GLY B 203 PHE B 208 5 6 HELIX 34 34 ASP B 220 SER B 224 5 5 HELIX 35 35 ASN B 232 ALA B 239 1 8 HELIX 36 36 ASN B 249 ASP B 259 1 11 HELIX 37 37 TYR B 276 ARG B 280 5 5 HELIX 38 38 SER B 287 SER B 300 1 14 HELIX 39 39 ARG B 314 HIS B 319 1 6 HELIX 40 40 ALA B 324 THR B 345 1 22 HELIX 41 41 GLN B 445 VAL B 449 5 5 HELIX 42 42 ASN B 456 GLY B 466 1 11 SHEET 1 A10 THR A 244 VAL A 247 0 SHEET 2 A10 ARG A 264 LEU A 268 1 O MET A 266 N VAL A 247 SHEET 3 A10 VAL A 198 GLY A 202 1 N ILE A 199 O GLY A 267 SHEET 4 A10 SER A 142 ARG A 150 1 N VAL A 145 O LEU A 200 SHEET 5 A10 PHE A 306 GLY A 312 1 O GLU A 311 N VAL A 146 SHEET 6 A10 ASN A 35 GLY A 41 1 N LEU A 40 O VAL A 310 SHEET 7 A10 THR A 350 ALA A 356 1 O LEU A 353 N PHE A 39 SHEET 8 A10 VAL A 437 ARG A 442 -1 O PHE A 440 N ILE A 354 SHEET 9 A10 PHE A 76 LYS A 81 -1 N SER A 80 O VAL A 437 SHEET 10 A10 VAL A 452 GLU A 454 1 O GLN A 453 N LEU A 79 SHEET 1 B10 THR B 244 VAL B 247 0 SHEET 2 B10 ARG B 264 LEU B 268 1 O MET B 266 N ARG B 245 SHEET 3 B10 VAL B 198 GLY B 202 1 N ILE B 199 O GLY B 267 SHEET 4 B10 SER B 142 ARG B 150 1 N VAL B 145 O LEU B 200 SHEET 5 B10 PHE B 306 GLY B 312 1 O GLU B 311 N VAL B 146 SHEET 6 B10 ASN B 35 GLY B 41 1 N LEU B 40 O VAL B 310 SHEET 7 B10 THR B 350 ALA B 356 1 O LEU B 353 N PHE B 39 SHEET 8 B10 VAL B 437 ARG B 442 -1 O PHE B 440 N ILE B 354 SHEET 9 B10 PHE B 76 LYS B 81 -1 N SER B 80 O VAL B 437 SHEET 10 B10 VAL B 452 GLU B 454 1 O GLN B 453 N LEU B 79 SSBOND 1 CYS A 121 CYS A 183 1555 1555 2.04 SSBOND 2 CYS A 467 CYS A 474 1555 1555 2.07 SSBOND 3 CYS B 121 CYS B 183 1555 1555 2.04 SSBOND 4 CYS B 467 CYS B 474 1555 1555 2.07 LINK C ASP A 91 N SEP A 92 1555 1555 1.34 LINK C SEP A 92 N ALA A 93 1555 1555 1.35 LINK C ASP B 91 N SEP B 92 1555 1555 1.34 LINK C SEP B 92 N ALA B 93 1555 1555 1.36 LINK OG SER A 155 MG MG A 501 1555 1555 2.35 LINK OE1 GLU A 216 MG MG A 502 1555 1555 2.56 LINK O PHE A 269 MG MG A 502 1555 1555 2.40 LINK OE2 GLU A 270 MG MG A 502 1555 1555 2.43 LINK OD1 ASP A 285 MG MG A 502 1555 1555 2.33 LINK OE2 GLU A 311 MG MG A 501 1555 1555 1.97 LINK MG MG A 501 O HOH A 734 1555 1555 2.26 LINK MG MG A 501 O HOH A 735 1555 1555 1.97 LINK MG MG A 501 O HOH A 736 1555 1555 2.31 LINK MG MG A 501 O HOH A 737 1555 1555 2.23 LINK MG MG A 502 O HOH A 634 1555 1555 2.22 LINK OG SER B 155 MG MG B 501 1555 1555 2.16 LINK OE1 GLU B 216 MG MG B 502 1555 1555 2.53 LINK O PHE B 269 MG MG B 502 1555 1555 2.35 LINK OE2 GLU B 270 MG MG B 502 1555 1555 2.49 LINK OD1 ASP B 285 MG MG B 502 1555 1555 2.38 LINK OE2 GLU B 311 MG MG B 501 1555 1555 1.95 LINK MG MG B 501 O HOH B 704 1555 1555 2.40 LINK MG MG B 501 O HOH B 737 1555 1555 2.44 LINK MG MG B 501 O HOH B 738 1555 1555 2.04 LINK MG MG B 501 O HOH B 739 1555 1555 2.08 LINK MG MG B 502 O HOH B 609 1555 1555 2.38 CISPEP 1 GLU A 469 PRO A 470 0 -3.16 CISPEP 2 GLU B 469 PRO B 470 0 -0.05 SITE 1 AC1 6 SER A 155 GLU A 311 HOH A 734 HOH A 735 SITE 2 AC1 6 HOH A 736 HOH A 737 SITE 1 AC2 5 GLU A 216 PHE A 269 GLU A 270 ASP A 285 SITE 2 AC2 5 HOH A 634 SITE 1 AC3 8 LYS A 34 ASN A 35 SER A 300 THR A 345 SITE 2 AC3 8 ASN A 346 ASP A 349 THR A 350 HOH A 651 SITE 1 AC4 6 SER B 155 GLU B 311 HOH B 704 HOH B 737 SITE 2 AC4 6 HOH B 738 HOH B 739 SITE 1 AC5 5 GLU B 216 PHE B 269 GLU B 270 ASP B 285 SITE 2 AC5 5 HOH B 609 SITE 1 AC6 7 LYS B 34 ASN B 35 SER B 300 ASN B 346 SITE 2 AC6 7 ASP B 349 THR B 350 HOH B 631 CRYST1 63.321 75.726 170.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005858 0.00000