HEADER HYDROLASE 03-MAY-13 4KJG TITLE STRUCTURE OF RAT INTESTINAL ALKALINE PHOSPHATASE EXPRESSED IN INSECT TITLE 2 CELL COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTESTINAL-TYPE ALKALINE PHOSPHATASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IAP-1, INTESTINAL ALKALINE PHOSPHATASE 1, INTESTINAL COMPND 5 ALKALINE PHOSPHATASE I, IAP-I; COMPND 6 EC: 3.1.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ALPI; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFB KEYWDS ALPHA/BETA FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,R.K.ANUMULA,B.K.LAKSMAIAH REVDAT 3 29-JUL-20 4KJG 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 27-NOV-13 4KJG 1 JRNL REVDAT 1 16-OCT-13 4KJG 0 JRNL AUTH K.GHOSH,D.MAZUMDER TAGORE,R.ANUMULA,B.LAKSHMAIAH,P.P.KUMAR, JRNL AUTH 2 S.SINGARAM,T.MATAN,S.KALLIPATTI,S.SELVAM,P.KRISHNAMURTHY, JRNL AUTH 3 M.RAMARAO JRNL TITL CRYSTAL STRUCTURE OF RAT INTESTINAL ALKALINE PHOSPHATASE - JRNL TITL 2 ROLE OF CROWN DOMAIN IN MAMMALIAN ALKALINE PHOSPHATASES. JRNL REF J.STRUCT.BIOL. V. 184 182 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 24076154 JRNL DOI 10.1016/J.JSB.2013.09.017 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2224 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2843 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1854 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2705 REMARK 3 BIN R VALUE (WORKING SET) : 0.1841 REMARK 3 BIN FREE R VALUE : 0.2109 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.65380 REMARK 3 B22 (A**2) : 9.14570 REMARK 3 B33 (A**2) : -3.49190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.221 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.312 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7664 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10431 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44083 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.15300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.92150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.92150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.15300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 SER A 221 OG REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 GLN A 255 CG CD OE1 NE2 REMARK 470 SER A 403 OG REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 GLN B 255 CG CD OE1 NE2 REMARK 470 ASP B 473 CG OD1 OD2 REMARK 470 ASP B 481 CG OD1 OD2 REMARK 470 GLU B 482 CG CD OE1 OE2 REMARK 470 HIS B 483 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 119 19.89 58.66 REMARK 500 THR A 272 -117.20 -122.75 REMARK 500 SER A 359 -168.38 -106.25 REMARK 500 LEU A 401 62.89 -159.15 REMARK 500 ASN A 402 77.53 -68.11 REMARK 500 SER A 403 -126.78 60.16 REMARK 500 ASN A 408 77.31 -114.49 REMARK 500 ASP A 473 41.91 -91.92 REMARK 500 ALA A 480 -126.96 -139.71 REMARK 500 ASN B 119 19.75 58.69 REMARK 500 THR B 272 -116.59 -121.56 REMARK 500 SER B 359 -168.04 -104.10 REMARK 500 ASN B 408 75.98 -115.82 REMARK 500 ASP B 473 45.08 -93.95 REMARK 500 ALA B 480 -139.97 -125.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4NP A 1006 REMARK 610 4NP B 1006 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 SER A 92 OG 121.2 REMARK 620 3 ASP A 357 OD2 96.1 106.7 REMARK 620 4 HIS A 358 NE2 120.4 107.9 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD2 REMARK 620 2 SER A 155 OG 77.4 REMARK 620 3 GLU A 311 OE2 69.0 70.9 REMARK 620 4 HOH A1266 O 128.6 102.4 160.4 REMARK 620 5 HOH A1288 O 140.2 105.6 74.6 90.2 REMARK 620 6 HOH A1289 O 95.6 166.0 95.4 91.5 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 GLU A 216 OE2 49.8 REMARK 620 3 PHE A 269 O 78.9 125.7 REMARK 620 4 GLU A 270 OE2 99.3 118.2 82.2 REMARK 620 5 ASP A 285 OD1 143.9 94.7 137.0 91.8 REMARK 620 6 HOH A1110 O 93.1 83.1 83.2 158.6 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 316 OD2 REMARK 620 2 HIS A 320 NE2 93.0 REMARK 620 3 HIS A 432 NE2 139.1 103.3 REMARK 620 4 4NP A1006 O5 96.1 141.8 93.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 342 O REMARK 620 2 THR A 345 O 74.3 REMARK 620 3 HOH A1104 O 74.0 84.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD1 REMARK 620 2 SER B 92 OG 121.8 REMARK 620 3 ASP B 357 OD2 95.9 107.2 REMARK 620 4 HIS B 358 NE2 120.5 107.2 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD2 REMARK 620 2 SER B 155 OG 76.4 REMARK 620 3 GLU B 311 OE2 60.5 69.4 REMARK 620 4 HOH B1108 O 74.4 144.0 78.0 REMARK 620 5 HOH B1111 O 118.1 106.5 63.5 70.4 REMARK 620 6 HOH B1112 O 115.6 128.8 161.3 83.3 108.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 216 OE1 REMARK 620 2 GLU B 216 OE2 48.6 REMARK 620 3 PHE B 269 O 72.2 117.8 REMARK 620 4 GLU B 270 OE2 96.5 119.8 78.8 REMARK 620 5 ASP B 285 OD1 155.9 108.6 131.9 89.2 REMARK 620 6 HOH B1189 O 90.8 79.2 85.1 159.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 316 OD2 REMARK 620 2 HIS B 320 NE2 92.3 REMARK 620 3 HIS B 432 NE2 137.9 102.7 REMARK 620 4 4NP B1006 O5 97.9 140.8 94.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 342 O REMARK 620 2 THR B 345 O 76.9 REMARK 620 3 HOH B1101 O 81.1 96.7 REMARK 620 4 HOH B1104 O 96.0 80.8 176.7 REMARK 620 5 HOH B1109 O 160.8 102.8 79.8 102.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KJD RELATED DB: PDB DBREF 4KJG A 1 482 UNP P15693 PPBI1_RAT 21 502 DBREF 4KJG B 1 482 UNP P15693 PPBI1_RAT 21 502 SEQADV 4KJG HIS A 483 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS A 484 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS A 485 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS A 486 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS A 487 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS A 488 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 483 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 484 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 485 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 486 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 487 UNP P15693 EXPRESSION TAG SEQADV 4KJG HIS B 488 UNP P15693 EXPRESSION TAG SEQRES 1 A 488 VAL ILE PRO VAL GLU GLU GLU ASN PRO VAL PHE TRP ASN SEQRES 2 A 488 GLN LYS ALA LYS GLU ALA LEU ASP VAL ALA LYS LYS LEU SEQRES 3 A 488 GLN PRO ILE GLN THR SER ALA LYS ASN LEU ILE LEU PHE SEQRES 4 A 488 LEU GLY ASP GLY MET GLY VAL PRO THR VAL THR ALA THR SEQRES 5 A 488 ARG ILE LEU LYS GLY GLN LEU GLY GLY HIS LEU GLY PRO SEQRES 6 A 488 GLU THR PRO LEU ALA MET ASP HIS PHE PRO PHE THR ALA SEQRES 7 A 488 LEU SER LYS THR TYR ASN VAL ASP ARG GLN VAL PRO ASP SEQRES 8 A 488 SER ALA GLY THR ALA THR ALA TYR LEU CYS GLY VAL LYS SEQRES 9 A 488 ALA ASN TYR LYS THR ILE GLY VAL SER ALA ALA ALA ARG SEQRES 10 A 488 PHE ASN GLN CYS ASN SER THR PHE GLY ASN GLU VAL PHE SEQRES 11 A 488 SER VAL MET HIS ARG ALA LYS LYS ALA GLY LYS SER VAL SEQRES 12 A 488 GLY VAL VAL THR THR THR ARG VAL GLN HIS ALA SER PRO SEQRES 13 A 488 ALA GLY THR TYR ALA HIS THR VAL ASN ARG ASP TRP TYR SEQRES 14 A 488 SER ASP ALA ASP MET PRO SER SER ALA LEU GLN GLU GLY SEQRES 15 A 488 CYS LYS ASP ILE ALA THR GLN LEU ILE SER ASN MET ASP SEQRES 16 A 488 ILE ASP VAL ILE LEU GLY GLY GLY ARG LYS PHE MET PHE SEQRES 17 A 488 PRO LYS GLY THR PRO ASP PRO GLU TYR PRO GLY ASP SER SEQRES 18 A 488 ASP GLN SER GLY VAL ARG LEU ASP SER ARG ASN LEU VAL SEQRES 19 A 488 GLU GLU TRP LEU ALA LYS TYR GLN GLY THR ARG TYR VAL SEQRES 20 A 488 TRP ASN ARG GLU GLN LEU MET GLN ALA SER GLN ASP PRO SEQRES 21 A 488 ALA VAL THR ARG LEU MET GLY LEU PHE GLU PRO THR GLU SEQRES 22 A 488 MET LYS TYR ASP VAL ASN ARG ASN ALA SER ALA ASP PRO SEQRES 23 A 488 SER LEU ALA GLU MET THR GLU VAL ALA VAL ARG LEU LEU SEQRES 24 A 488 SER ARG ASN PRO GLN GLY PHE TYR LEU PHE VAL GLU GLY SEQRES 25 A 488 GLY ARG ILE ASP GLN GLY HIS HIS ALA GLY THR ALA TYR SEQRES 26 A 488 LEU ALA LEU THR GLU ALA VAL MET PHE ASP SER ALA ILE SEQRES 27 A 488 GLU LYS ALA SER GLN LEU THR ASN GLU LYS ASP THR LEU SEQRES 28 A 488 THR LEU ILE THR ALA ASP HIS SER HIS VAL PHE ALA PHE SEQRES 29 A 488 GLY GLY TYR THR LEU ARG GLY THR SER ILE PHE GLY LEU SEQRES 30 A 488 ALA PRO LEU ASN ALA GLN ASP GLY LYS SER TYR THR SER SEQRES 31 A 488 ILE LEU TYR GLY ASN GLY PRO GLY TYR VAL LEU ASN SER SEQRES 32 A 488 GLY ASN ARG PRO ASN VAL THR ASP ALA GLU SER GLY ASP SEQRES 33 A 488 VAL ASN TYR LYS GLN GLN ALA ALA VAL PRO LEU SER SER SEQRES 34 A 488 GLU THR HIS GLY GLY GLU ASP VAL ALA ILE PHE ALA ARG SEQRES 35 A 488 GLY PRO GLN ALA HIS LEU VAL HIS GLY VAL GLN GLU GLN SEQRES 36 A 488 ASN TYR ILE ALA HIS VAL MET ALA PHE ALA GLY CYS LEU SEQRES 37 A 488 GLU PRO TYR THR ASP CYS GLY LEU ALA PRO PRO ALA ASP SEQRES 38 A 488 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 488 VAL ILE PRO VAL GLU GLU GLU ASN PRO VAL PHE TRP ASN SEQRES 2 B 488 GLN LYS ALA LYS GLU ALA LEU ASP VAL ALA LYS LYS LEU SEQRES 3 B 488 GLN PRO ILE GLN THR SER ALA LYS ASN LEU ILE LEU PHE SEQRES 4 B 488 LEU GLY ASP GLY MET GLY VAL PRO THR VAL THR ALA THR SEQRES 5 B 488 ARG ILE LEU LYS GLY GLN LEU GLY GLY HIS LEU GLY PRO SEQRES 6 B 488 GLU THR PRO LEU ALA MET ASP HIS PHE PRO PHE THR ALA SEQRES 7 B 488 LEU SER LYS THR TYR ASN VAL ASP ARG GLN VAL PRO ASP SEQRES 8 B 488 SER ALA GLY THR ALA THR ALA TYR LEU CYS GLY VAL LYS SEQRES 9 B 488 ALA ASN TYR LYS THR ILE GLY VAL SER ALA ALA ALA ARG SEQRES 10 B 488 PHE ASN GLN CYS ASN SER THR PHE GLY ASN GLU VAL PHE SEQRES 11 B 488 SER VAL MET HIS ARG ALA LYS LYS ALA GLY LYS SER VAL SEQRES 12 B 488 GLY VAL VAL THR THR THR ARG VAL GLN HIS ALA SER PRO SEQRES 13 B 488 ALA GLY THR TYR ALA HIS THR VAL ASN ARG ASP TRP TYR SEQRES 14 B 488 SER ASP ALA ASP MET PRO SER SER ALA LEU GLN GLU GLY SEQRES 15 B 488 CYS LYS ASP ILE ALA THR GLN LEU ILE SER ASN MET ASP SEQRES 16 B 488 ILE ASP VAL ILE LEU GLY GLY GLY ARG LYS PHE MET PHE SEQRES 17 B 488 PRO LYS GLY THR PRO ASP PRO GLU TYR PRO GLY ASP SER SEQRES 18 B 488 ASP GLN SER GLY VAL ARG LEU ASP SER ARG ASN LEU VAL SEQRES 19 B 488 GLU GLU TRP LEU ALA LYS TYR GLN GLY THR ARG TYR VAL SEQRES 20 B 488 TRP ASN ARG GLU GLN LEU MET GLN ALA SER GLN ASP PRO SEQRES 21 B 488 ALA VAL THR ARG LEU MET GLY LEU PHE GLU PRO THR GLU SEQRES 22 B 488 MET LYS TYR ASP VAL ASN ARG ASN ALA SER ALA ASP PRO SEQRES 23 B 488 SER LEU ALA GLU MET THR GLU VAL ALA VAL ARG LEU LEU SEQRES 24 B 488 SER ARG ASN PRO GLN GLY PHE TYR LEU PHE VAL GLU GLY SEQRES 25 B 488 GLY ARG ILE ASP GLN GLY HIS HIS ALA GLY THR ALA TYR SEQRES 26 B 488 LEU ALA LEU THR GLU ALA VAL MET PHE ASP SER ALA ILE SEQRES 27 B 488 GLU LYS ALA SER GLN LEU THR ASN GLU LYS ASP THR LEU SEQRES 28 B 488 THR LEU ILE THR ALA ASP HIS SER HIS VAL PHE ALA PHE SEQRES 29 B 488 GLY GLY TYR THR LEU ARG GLY THR SER ILE PHE GLY LEU SEQRES 30 B 488 ALA PRO LEU ASN ALA GLN ASP GLY LYS SER TYR THR SER SEQRES 31 B 488 ILE LEU TYR GLY ASN GLY PRO GLY TYR VAL LEU ASN SER SEQRES 32 B 488 GLY ASN ARG PRO ASN VAL THR ASP ALA GLU SER GLY ASP SEQRES 33 B 488 VAL ASN TYR LYS GLN GLN ALA ALA VAL PRO LEU SER SER SEQRES 34 B 488 GLU THR HIS GLY GLY GLU ASP VAL ALA ILE PHE ALA ARG SEQRES 35 B 488 GLY PRO GLN ALA HIS LEU VAL HIS GLY VAL GLN GLU GLN SEQRES 36 B 488 ASN TYR ILE ALA HIS VAL MET ALA PHE ALA GLY CYS LEU SEQRES 37 B 488 GLU PRO TYR THR ASP CYS GLY LEU ALA PRO PRO ALA ASP SEQRES 38 B 488 GLU HIS HIS HIS HIS HIS HIS MODRES 4KJG ASN A 281 ASN GLYCOSYLATION SITE MODRES 4KJG ASN A 408 ASN GLYCOSYLATION SITE MODRES 4KJG ASN B 281 ASN GLYCOSYLATION SITE MODRES 4KJG ASN B 408 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG D 3 14 HET ZN A1001 1 HET ZN A1002 1 HET MG A1003 1 HET MG A1004 1 HET MG A1005 1 HET 4NP A1006 10 HET NAG A1007 14 HET ZN B1001 1 HET ZN B1002 1 HET MG B1003 1 HET MG B1004 1 HET MG B1005 1 HET 4NP B1006 10 HET NAG B1010 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 4NP 4-NITROPHENYL PHOSPHATE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 5 ZN 4(ZN 2+) FORMUL 7 MG 6(MG 2+) FORMUL 10 4NP 2(C6 H6 N O6 P) FORMUL 19 HOH *390(H2 O) HELIX 1 1 PRO A 3 GLU A 7 5 5 HELIX 2 2 ASN A 8 LEU A 26 1 19 HELIX 3 3 GLY A 45 GLY A 60 1 16 HELIX 4 4 ALA A 70 PHE A 74 5 5 HELIX 5 5 ASP A 91 GLY A 102 1 12 HELIX 6 6 GLN A 120 PHE A 125 5 6 HELIX 7 7 SER A 131 ALA A 139 1 9 HELIX 8 8 HIS A 153 GLY A 158 1 6 HELIX 9 9 SER A 170 MET A 174 5 5 HELIX 10 10 PRO A 175 GLU A 181 1 7 HELIX 11 11 ASP A 185 ASN A 193 1 9 HELIX 12 12 ARG A 204 PHE A 208 5 5 HELIX 13 13 ASN A 232 ALA A 239 1 8 HELIX 14 14 ASN A 249 ASP A 259 1 11 HELIX 15 15 TYR A 276 ARG A 280 5 5 HELIX 16 16 SER A 287 SER A 300 1 14 HELIX 17 17 GLY A 313 ALA A 321 1 9 HELIX 18 18 THR A 323 THR A 345 1 23 HELIX 19 19 THR A 410 GLY A 415 1 6 HELIX 20 20 GLN A 445 VAL A 449 5 5 HELIX 21 21 ASN A 456 GLY A 466 1 11 HELIX 22 22 PRO B 3 GLU B 7 5 5 HELIX 23 23 ASN B 8 LEU B 26 1 19 HELIX 24 24 GLY B 45 GLY B 60 1 16 HELIX 25 25 ALA B 70 PHE B 74 5 5 HELIX 26 26 ASP B 91 GLY B 102 1 12 HELIX 27 27 GLN B 120 PHE B 125 5 6 HELIX 28 28 SER B 131 ALA B 139 1 9 HELIX 29 29 HIS B 153 GLY B 158 1 6 HELIX 30 30 SER B 170 MET B 174 5 5 HELIX 31 31 PRO B 175 GLU B 181 1 7 HELIX 32 32 ASP B 185 ASN B 193 1 9 HELIX 33 33 GLY B 203 PHE B 208 5 6 HELIX 34 34 ASN B 232 ALA B 239 1 8 HELIX 35 35 ASN B 249 ASP B 259 1 11 HELIX 36 36 TYR B 276 ARG B 280 5 5 HELIX 37 37 SER B 287 SER B 300 1 14 HELIX 38 38 GLY B 313 ALA B 321 1 9 HELIX 39 39 THR B 323 THR B 345 1 23 HELIX 40 40 LEU B 401 ASN B 405 5 5 HELIX 41 41 THR B 410 GLY B 415 1 6 HELIX 42 42 GLN B 445 VAL B 449 5 5 HELIX 43 43 ASN B 456 GLY B 466 1 11 SHEET 1 A10 THR A 244 VAL A 247 0 SHEET 2 A10 ARG A 264 LEU A 268 1 O MET A 266 N ARG A 245 SHEET 3 A10 VAL A 198 GLY A 202 1 N ILE A 199 O GLY A 267 SHEET 4 A10 SER A 142 ARG A 150 1 N VAL A 145 O LEU A 200 SHEET 5 A10 PHE A 306 GLY A 312 1 O PHE A 309 N VAL A 146 SHEET 6 A10 ASN A 35 GLY A 41 1 N LEU A 40 O VAL A 310 SHEET 7 A10 THR A 350 ALA A 356 1 O THR A 355 N GLY A 41 SHEET 8 A10 VAL A 437 ARG A 442 -1 O PHE A 440 N ILE A 354 SHEET 9 A10 PHE A 76 LYS A 81 -1 N SER A 80 O VAL A 437 SHEET 10 A10 VAL A 452 GLU A 454 1 O GLN A 453 N LEU A 79 SHEET 1 B 2 SER A 359 HIS A 360 0 SHEET 2 B 2 HIS A 432 GLY A 433 -1 O GLY A 433 N SER A 359 SHEET 1 C 3 PHE A 362 PHE A 364 0 SHEET 2 C 3 ILE A 391 GLY A 396 -1 O LEU A 392 N ALA A 363 SHEET 3 C 3 ALA A 423 PRO A 426 1 O VAL A 425 N GLY A 396 SHEET 1 D10 THR B 244 VAL B 247 0 SHEET 2 D10 ARG B 264 LEU B 268 1 O MET B 266 N ARG B 245 SHEET 3 D10 VAL B 198 GLY B 202 1 N ILE B 199 O GLY B 267 SHEET 4 D10 SER B 142 ARG B 150 1 N VAL B 145 O LEU B 200 SHEET 5 D10 PHE B 306 GLY B 312 1 O PHE B 309 N VAL B 146 SHEET 6 D10 ASN B 35 GLY B 41 1 N LEU B 40 O VAL B 310 SHEET 7 D10 THR B 350 ALA B 356 1 O THR B 355 N GLY B 41 SHEET 8 D10 VAL B 437 ARG B 442 -1 O PHE B 440 N ILE B 354 SHEET 9 D10 PHE B 76 LYS B 81 -1 N SER B 80 O VAL B 437 SHEET 10 D10 VAL B 452 GLU B 454 1 O GLN B 453 N LEU B 79 SHEET 1 E 2 SER B 359 HIS B 360 0 SHEET 2 E 2 HIS B 432 GLY B 433 -1 O GLY B 433 N SER B 359 SHEET 1 F 3 PHE B 362 PHE B 364 0 SHEET 2 F 3 ILE B 391 GLY B 396 -1 O LEU B 392 N ALA B 363 SHEET 3 F 3 ALA B 423 PRO B 426 1 O VAL B 425 N GLY B 396 SSBOND 1 CYS A 121 CYS A 183 1555 1555 2.06 SSBOND 2 CYS A 467 CYS A 474 1555 1555 2.08 SSBOND 3 CYS B 121 CYS B 183 1555 1555 2.05 SSBOND 4 CYS B 467 CYS B 474 1555 1555 2.09 LINK ND2 ASN A 281 C1 NAG C 1 1555 1555 1.58 LINK ND2 ASN A 408 C1 NAG A1007 1555 1555 1.64 LINK ND2 ASN B 281 C1 NAG D 1 1555 1555 1.69 LINK ND2 ASN B 408 C1 NAG B1010 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.47 LINK O6 NAG C 3 C1 NAG C 4 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 LINK O6 NAG D 1 C1 NAG D 3 1555 1555 1.43 LINK OD1 ASP A 42 ZN ZN A1002 1555 1555 1.98 LINK OD2 ASP A 42 MG MG A1003 1555 1555 1.95 LINK OG SER A 92 ZN ZN A1002 1555 1555 2.31 LINK OG SER A 155 MG MG A1003 1555 1555 2.70 LINK OE1 GLU A 216 MG MG A1004 1555 1555 2.34 LINK OE2 GLU A 216 MG MG A1004 1555 1555 2.79 LINK O PHE A 269 MG MG A1004 1555 1555 2.26 LINK OE2 GLU A 270 MG MG A1004 1555 1555 2.35 LINK OD1 ASP A 285 MG MG A1004 1555 1555 2.23 LINK OE2 GLU A 311 MG MG A1003 1555 1555 2.68 LINK OD2 ASP A 316 ZN ZN A1001 1555 1555 2.10 LINK NE2 HIS A 320 ZN ZN A1001 1555 1555 2.03 LINK O SER A 342 MG MG A1005 1555 1555 2.49 LINK O THR A 345 MG MG A1005 1555 1555 2.43 LINK OD2 ASP A 357 ZN ZN A1002 1555 1555 2.11 LINK NE2 HIS A 358 ZN ZN A1002 1555 1555 2.15 LINK NE2 HIS A 432 ZN ZN A1001 1555 1555 2.06 LINK ZN ZN A1001 O5 4NP A1006 1555 1555 2.17 LINK MG MG A1003 O HOH A1266 1555 1555 2.54 LINK MG MG A1003 O HOH A1288 1555 1555 2.37 LINK MG MG A1003 O HOH A1289 1555 1555 2.51 LINK MG MG A1004 O HOH A1110 1555 1555 2.37 LINK MG MG A1005 O HOH A1104 1555 1555 2.68 LINK OD1 ASP B 42 ZN ZN B1002 1555 1555 1.96 LINK OD2 ASP B 42 MG MG B1003 1555 1555 2.26 LINK OG SER B 92 ZN ZN B1002 1555 1555 2.32 LINK OG SER B 155 MG MG B1003 1555 1555 2.54 LINK OE1 GLU B 216 MG MG B1004 1555 1555 2.50 LINK OE2 GLU B 216 MG MG B1004 1555 1555 2.80 LINK O PHE B 269 MG MG B1004 1555 1555 2.45 LINK OE2 GLU B 270 MG MG B1004 1555 1555 2.30 LINK OD1 ASP B 285 MG MG B1004 1555 1555 1.96 LINK OE2 GLU B 311 MG MG B1003 1555 1555 2.96 LINK OD2 ASP B 316 ZN ZN B1001 1555 1555 2.10 LINK NE2 HIS B 320 ZN ZN B1001 1555 1555 2.03 LINK O SER B 342 MG MG B1005 1555 1555 2.45 LINK O THR B 345 MG MG B1005 1555 1555 2.32 LINK OD2 ASP B 357 ZN ZN B1002 1555 1555 2.10 LINK NE2 HIS B 358 ZN ZN B1002 1555 1555 2.16 LINK NE2 HIS B 432 ZN ZN B1001 1555 1555 2.07 LINK ZN ZN B1001 O5 4NP B1006 1555 1555 2.28 LINK MG MG B1003 O HOH B1108 1555 1555 2.89 LINK MG MG B1003 O HOH B1111 1555 1555 2.53 LINK MG MG B1003 O HOH B1112 1555 1555 2.70 LINK MG MG B1004 O HOH B1189 1555 1555 2.41 LINK MG MG B1005 O HOH B1101 1555 1555 2.34 LINK MG MG B1005 O HOH B1104 1555 1555 2.48 LINK MG MG B1005 O HOH B1109 1555 1555 2.60 CISPEP 1 GLU A 469 PRO A 470 0 4.91 CISPEP 2 GLU B 469 PRO B 470 0 4.43 CRYST1 90.306 167.170 71.843 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013919 0.00000