HEADER TRANSPORT PROTEIN 03-MAY-13 4KJS TITLE STRUCTURE OF NATIVE YFKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION EXCHANGER YFKE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YFKE, BSU07920; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YFKE, CACA, CA/H+ ANTIPORTER, CAX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WU,S.TONG,L.ZHENG REVDAT 3 28-FEB-24 4KJS 1 SEQADV REVDAT 2 07-AUG-13 4KJS 1 JRNL REVDAT 1 26-JUN-13 4KJS 0 JRNL AUTH M.WU,S.TONG,S.WALTERSPERGER,K.DIEDERICHS,M.WANG,L.ZHENG JRNL TITL CRYSTAL STRUCTURE OF CA2+/H+ ANTIPORTER PROTEIN YFKE REVEALS JRNL TITL 2 THE MECHANISMS OF CA2+ EFFLUX AND ITS PH REGULATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11367 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23798403 JRNL DOI 10.1073/PNAS.1302515110 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.63000 REMARK 3 B22 (A**2) : 9.63000 REMARK 3 B33 (A**2) : -19.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4876 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6634 ; 1.266 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 6.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.022 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 786 ;19.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.052 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 840 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3460 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.486 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4KJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.6 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 84.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 17.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23-25% PEG400, 0.2M AMMONIUM SULFATE, REMARK 280 20MM NACL, 0.1M NAAC PH4.0, 3% HEXANEDIOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.25250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.64320 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.38967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 84.25250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 48.64320 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.38967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 84.25250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 48.64320 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.38967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.28641 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.77933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 97.28641 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.77933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 97.28641 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.77933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 54 REMARK 465 ALA A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 178 REMARK 465 VAL A 179 REMARK 465 THR A 180 REMARK 465 HIS A 181 REMARK 465 ARG A 182 REMARK 465 GLY A 183 REMARK 465 VAL A 184 REMARK 465 TYR A 185 REMARK 465 GLN A 186 REMARK 465 PRO A 187 REMARK 465 ASN A 188 REMARK 465 ASN A 189 REMARK 465 ALA A 190 REMARK 465 ALA A 191 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 GLU A 198 REMARK 465 PRO A 199 REMARK 465 GLU A 200 REMARK 465 TRP A 201 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 54 REMARK 465 ALA B 55 REMARK 465 GLY B 56 REMARK 465 PRO B 57 REMARK 465 ARG B 58 REMARK 465 ILE B 59 REMARK 465 VAL B 179 REMARK 465 THR B 180 REMARK 465 HIS B 181 REMARK 465 ARG B 182 REMARK 465 GLY B 183 REMARK 465 VAL B 184 REMARK 465 TYR B 185 REMARK 465 GLN B 186 REMARK 465 PRO B 187 REMARK 465 ASN B 188 REMARK 465 ASN B 189 REMARK 465 ALA B 190 REMARK 465 ALA B 191 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 GLU B 196 REMARK 465 GLU B 197 REMARK 465 GLU B 198 REMARK 465 PRO B 199 REMARK 465 GLU B 200 REMARK 465 TRP B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 20 NE2 HIS B 23 1.91 REMARK 500 O ILE B 323 OD1 ASP B 326 1.95 REMARK 500 OG SER B 20 OH TYR B 219 1.96 REMARK 500 O SER B 20 CD2 HIS B 23 1.96 REMARK 500 CG2 THR A 299 O GLU B 82 2.01 REMARK 500 CA PHE B 120 OD2 ASP B 328 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 115 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 TYR A 115 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 ALA A 116 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 326 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP A 328 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 SER A 329 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 102 -61.61 -95.38 REMARK 500 TYR A 115 -14.78 79.99 REMARK 500 ARG A 117 -173.59 -173.27 REMARK 500 VAL A 138 -70.20 -107.47 REMARK 500 LYS A 267 70.60 -117.92 REMARK 500 PHE A 285 -58.71 -122.44 REMARK 500 ASP A 328 -59.21 64.89 REMARK 500 LYS B 114 -55.68 -134.96 REMARK 500 VAL B 138 -68.27 -103.49 REMARK 500 PHE B 176 -50.69 -126.93 REMARK 500 ILE B 245 -65.83 -107.54 REMARK 500 ASN B 266 19.71 56.75 REMARK 500 LYS B 267 52.09 -100.84 REMARK 500 PHE B 285 -62.33 -131.89 REMARK 500 ASP B 328 -52.09 71.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 297 PRO A 298 -30.41 REMARK 500 THR A 299 SER A 300 -137.65 REMARK 500 TRP B 24 PRO B 25 -53.36 REMARK 500 PHE B 120 ASN B 121 138.68 REMARK 500 PHE B 297 PRO B 298 -39.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KJR RELATED DB: PDB DBREF 4KJS A 1 351 UNP O34840 YFKE_BACSU 1 351 DBREF 4KJS B 1 351 UNP O34840 YFKE_BACSU 1 351 SEQADV 4KJS MET A 77 UNP O34840 LEU 77 CONFLICT SEQADV 4KJS ALA A 116 UNP O34840 LYS 116 CONFLICT SEQADV 4KJS MET B 77 UNP O34840 LEU 77 CONFLICT SEQADV 4KJS ALA B 116 UNP O34840 LYS 116 CONFLICT SEQRES 1 A 351 MET ASN ARG ILE PHE PHE ILE LEU VAL ALA ALA GLY VAL SEQRES 2 A 351 PRO LEU SER VAL ILE GLY SER LEU MET HIS TRP PRO SER SEQRES 3 A 351 ALA VAL LEU PHE ALA VAL TYR CYS VAL THR ILE ILE ALA SEQRES 4 A 351 LEU ALA SER TYR MET GLY ARG ALA THR GLU SER LEU SER SEQRES 5 A 351 ILE ILE ALA GLY PRO ARG ILE GLY GLY LEU LEU ASN ALA SEQRES 6 A 351 THR PHE GLY ASN ALA VAL GLU LEU ILE ILE SER MET PHE SEQRES 7 A 351 ALA LEU LYS GLU GLY LEU THR GLY ILE VAL LEU ALA SER SEQRES 8 A 351 LEU THR GLY SER VAL LEU GLY ASN LEU LEU LEU VAL ALA SEQRES 9 A 351 GLY LEU SER PHE PHE VAL GLY GLY LEU LYS TYR ALA ARG SEQRES 10 A 351 GLN GLU PHE ASN ILE HIS ASP ALA ARG HIS ASN SER GLY SEQRES 11 A 351 LEU LEU ILE PHE ALA ILE ILE VAL ALA PHE VAL ILE PRO SEQRES 12 A 351 GLU VAL PHE SER VAL GLY MET GLY ASN ALA SER LYS LEU SEQRES 13 A 351 ASN LEU SER ILE GLY ILE SER ILE ILE MET ILE LEU LEU SEQRES 14 A 351 TYR VAL ALA ALA LEU TYR PHE LYS LEU VAL THR HIS ARG SEQRES 15 A 351 GLY VAL TYR GLN PRO ASN ASN ALA ALA GLN THR GLU GLU SEQRES 16 A 351 GLU GLU GLU PRO GLU TRP SER GLY LYS VAL ALA THR ILE SEQRES 17 A 351 VAL LEU PHE ALA ALA THR ILE VAL VAL ALA TYR ILE SER SEQRES 18 A 351 GLU ASN LEU VAL HIS THR PHE HIS SER VAL ALA GLU GLN SEQRES 19 A 351 PHE GLY TRP SER GLU LEU PHE ILE GLY VAL ILE ILE VAL SEQRES 20 A 351 ALA ILE VAL GLY ASN ALA ALA GLU HIS ALA SER ALA ILE SEQRES 21 A 351 ILE MET ALA PHE LYS ASN LYS MET ASP ILE ALA VAL GLU SEQRES 22 A 351 ILE ALA VAL GLY SER THR LEU GLN ILE ALA MET PHE VAL SEQRES 23 A 351 ALA PRO VAL LEU VAL ILE CYS SER ILE PHE PHE PRO THR SEQRES 24 A 351 SER MET PRO LEU VAL PHE THR LEU PRO GLU LEU VAL ALA SEQRES 25 A 351 MET VAL SER ALA VAL LEU LEU MET ILE ALA ILE SER ASN SEQRES 26 A 351 ASP GLY ASP SER ASN TRP PHE GLU GLY ALA THR LEU LEU SEQRES 27 A 351 ALA ALA TYR VAL ILE MET ALA ILE GLY PHE PHE LEU LEU SEQRES 1 B 351 MET ASN ARG ILE PHE PHE ILE LEU VAL ALA ALA GLY VAL SEQRES 2 B 351 PRO LEU SER VAL ILE GLY SER LEU MET HIS TRP PRO SER SEQRES 3 B 351 ALA VAL LEU PHE ALA VAL TYR CYS VAL THR ILE ILE ALA SEQRES 4 B 351 LEU ALA SER TYR MET GLY ARG ALA THR GLU SER LEU SER SEQRES 5 B 351 ILE ILE ALA GLY PRO ARG ILE GLY GLY LEU LEU ASN ALA SEQRES 6 B 351 THR PHE GLY ASN ALA VAL GLU LEU ILE ILE SER MET PHE SEQRES 7 B 351 ALA LEU LYS GLU GLY LEU THR GLY ILE VAL LEU ALA SER SEQRES 8 B 351 LEU THR GLY SER VAL LEU GLY ASN LEU LEU LEU VAL ALA SEQRES 9 B 351 GLY LEU SER PHE PHE VAL GLY GLY LEU LYS TYR ALA ARG SEQRES 10 B 351 GLN GLU PHE ASN ILE HIS ASP ALA ARG HIS ASN SER GLY SEQRES 11 B 351 LEU LEU ILE PHE ALA ILE ILE VAL ALA PHE VAL ILE PRO SEQRES 12 B 351 GLU VAL PHE SER VAL GLY MET GLY ASN ALA SER LYS LEU SEQRES 13 B 351 ASN LEU SER ILE GLY ILE SER ILE ILE MET ILE LEU LEU SEQRES 14 B 351 TYR VAL ALA ALA LEU TYR PHE LYS LEU VAL THR HIS ARG SEQRES 15 B 351 GLY VAL TYR GLN PRO ASN ASN ALA ALA GLN THR GLU GLU SEQRES 16 B 351 GLU GLU GLU PRO GLU TRP SER GLY LYS VAL ALA THR ILE SEQRES 17 B 351 VAL LEU PHE ALA ALA THR ILE VAL VAL ALA TYR ILE SER SEQRES 18 B 351 GLU ASN LEU VAL HIS THR PHE HIS SER VAL ALA GLU GLN SEQRES 19 B 351 PHE GLY TRP SER GLU LEU PHE ILE GLY VAL ILE ILE VAL SEQRES 20 B 351 ALA ILE VAL GLY ASN ALA ALA GLU HIS ALA SER ALA ILE SEQRES 21 B 351 ILE MET ALA PHE LYS ASN LYS MET ASP ILE ALA VAL GLU SEQRES 22 B 351 ILE ALA VAL GLY SER THR LEU GLN ILE ALA MET PHE VAL SEQRES 23 B 351 ALA PRO VAL LEU VAL ILE CYS SER ILE PHE PHE PRO THR SEQRES 24 B 351 SER MET PRO LEU VAL PHE THR LEU PRO GLU LEU VAL ALA SEQRES 25 B 351 MET VAL SER ALA VAL LEU LEU MET ILE ALA ILE SER ASN SEQRES 26 B 351 ASP GLY ASP SER ASN TRP PHE GLU GLY ALA THR LEU LEU SEQRES 27 B 351 ALA ALA TYR VAL ILE MET ALA ILE GLY PHE PHE LEU LEU FORMUL 3 HOH *18(H2 O) HELIX 1 1 ILE A 4 HIS A 23 1 20 HELIX 2 2 PRO A 25 ILE A 53 1 29 HELIX 3 3 ILE A 59 PHE A 67 1 9 HELIX 4 4 ASN A 69 GLU A 82 1 14 HELIX 5 5 LEU A 84 LEU A 102 1 19 HELIX 6 6 ALA A 104 GLY A 111 1 8 HELIX 7 7 ASN A 121 ILE A 136 1 16 HELIX 8 8 PHE A 140 VAL A 148 1 9 HELIX 9 9 GLY A 151 LYS A 177 1 27 HELIX 10 10 GLY A 203 HIS A 226 1 24 HELIX 11 11 THR A 227 GLY A 236 1 10 HELIX 12 12 SER A 238 ILE A 245 1 8 HELIX 13 13 ILE A 245 GLY A 251 1 7 HELIX 14 14 GLY A 251 HIS A 256 1 6 HELIX 15 15 ALA A 257 LYS A 265 1 9 HELIX 16 16 LYS A 267 PHE A 285 1 19 HELIX 17 17 PHE A 285 ILE A 295 1 11 HELIX 18 18 THR A 306 ASN A 325 1 20 HELIX 19 19 ASN A 330 LEU A 351 1 22 HELIX 20 20 ILE B 4 HIS B 23 1 20 HELIX 21 21 SER B 26 SER B 52 1 27 HELIX 22 22 GLY B 61 GLY B 68 1 8 HELIX 23 23 ASN B 69 GLU B 82 1 14 HELIX 24 24 LEU B 84 GLY B 112 1 29 HELIX 25 25 ASN B 121 VAL B 138 1 18 HELIX 26 26 PHE B 140 SER B 147 1 8 HELIX 27 27 VAL B 148 MET B 150 5 3 HELIX 28 28 GLY B 151 PHE B 176 1 26 HELIX 29 29 LYS B 204 HIS B 226 1 23 HELIX 30 30 THR B 227 PHE B 235 1 9 HELIX 31 31 SER B 238 ILE B 245 1 8 HELIX 32 32 ILE B 245 HIS B 256 1 12 HELIX 33 33 ALA B 257 LYS B 265 1 9 HELIX 34 34 LYS B 267 PHE B 285 1 19 HELIX 35 35 PHE B 285 ILE B 295 1 11 HELIX 36 36 THR B 306 GLY B 327 1 22 HELIX 37 37 ASN B 330 LEU B 351 1 22 CISPEP 1 TRP A 24 PRO A 25 0 -16.96 CRYST1 168.505 168.505 94.169 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005935 0.003426 0.000000 0.00000 SCALE2 0.000000 0.006853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010619 0.00000