HEADER HYDROLASE 08-MAY-13 4KM3 TITLE DISCOVERY OF A NOVEL STRUCTURAL MOTIF IN METHIONINE AMINOPEPTIDASE TITLE 2 FROM STREPTOCOCCI WITH POSSIBLE POST-TRANSLATIONAL MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 516950; SOURCE 4 STRAIN: CGSP14; SOURCE 5 GENE: MAP, SPCG_1194; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASSIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ARYA,A.ADDLAGATTA REVDAT 3 08-NOV-23 4KM3 1 REMARK REVDAT 2 11-DEC-19 4KM3 1 REMARK REVDAT 1 15-JAN-14 4KM3 0 JRNL AUTH T.ARYA,C.KISHOR,V.SADDANAPU,R.REDDI,A.ADDLAGATTA JRNL TITL DISCOVERY OF A NEW GENETIC VARIANT OF METHIONINE JRNL TITL 2 AMINOPEPTIDASE FROM STREPTOCOCCI WITH POSSIBLE JRNL TITL 3 POST-TRANSLATIONAL MODIFICATIONS: BIOCHEMICAL AND STRUCTURAL JRNL TITL 4 CHARACTERIZATION. JRNL REF PLOS ONE V. 8 75207 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24124477 JRNL DOI 10.1371/JOURNAL.PONE.0075207 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 16111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.498 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.386 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4440 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4203 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5998 ; 1.593 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9703 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 9.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;38.524 ;24.900 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 782 ;21.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;20.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5042 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.7326 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K,H,-L REMARK 3 TWIN FRACTION : 0.2674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18507 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 23.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70000 REMARK 200 FOR SHELL : 2.493 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344M POTASSIUM PHOSPHATE DIBASIC , PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.61600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.80800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.21200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.40400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 137.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 199 REMARK 465 GLY B 200 REMARK 465 VAL B 201 REMARK 465 GLY B 202 REMARK 465 PRO B 203 REMARK 465 THR B 204 REMARK 465 MET B 205 REMARK 465 HIS B 206 REMARK 465 GLU B 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 219 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 277 O HOH B 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 -162.96 -118.53 REMARK 500 ASN A 52 96.64 -69.57 REMARK 500 ALA A 63 -82.44 -68.06 REMARK 500 ASN A 76 -95.20 60.57 REMARK 500 SER A 108 -169.27 109.37 REMARK 500 ASP A 109 -79.88 -70.06 REMARK 500 VAL A 112 142.60 54.65 REMARK 500 LEU A 115 10.68 -140.42 REMARK 500 ASN A 119 104.57 39.75 REMARK 500 VAL A 120 14.18 -68.21 REMARK 500 GLN A 122 -158.49 -114.60 REMARK 500 MET A 123 71.72 -110.67 REMARK 500 LYS A 124 79.46 -102.30 REMARK 500 LYS A 125 71.01 -107.10 REMARK 500 SER A 129 123.95 -177.12 REMARK 500 TYR A 130 95.39 -50.30 REMARK 500 SER A 137 106.99 -161.27 REMARK 500 SER A 147 173.21 -50.48 REMARK 500 ASP A 195 -10.81 -48.40 REMARK 500 HIS A 199 96.97 -24.24 REMARK 500 VAL A 201 59.30 31.54 REMARK 500 MET A 205 -177.76 175.20 REMARK 500 GLU A 207 -40.67 81.52 REMARK 500 ALA A 217 22.22 -78.15 REMARK 500 ARG A 219 57.33 -69.98 REMARK 500 GLU A 232 86.78 -165.82 REMARK 500 TRP A 250 -74.46 -108.12 REMARK 500 ASN B 76 -108.25 53.90 REMARK 500 LEU B 89 167.41 -42.25 REMARK 500 ALA B 106 -148.24 -77.01 REMARK 500 SER B 108 -121.90 -171.07 REMARK 500 ASP B 109 -159.16 -88.59 REMARK 500 LEU B 110 57.48 -69.18 REMARK 500 ASN B 111 -57.99 -156.04 REMARK 500 PHE B 117 52.28 -10.48 REMARK 500 ALA B 135 119.51 -167.62 REMARK 500 SER B 137 110.88 -170.74 REMARK 500 SER B 147 171.57 -54.25 REMARK 500 ILE B 177 -70.21 -79.23 REMARK 500 VAL B 197 80.21 24.58 REMARK 500 ASP B 245 123.98 -35.43 REMARK 500 TRP B 250 -75.66 -127.46 REMARK 500 GLN B 262 118.42 -169.69 REMARK 500 ASP B 272 -3.35 87.59 REMARK 500 THR B 278 32.92 -81.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 118 ASN A 119 -144.43 REMARK 500 LYS A 125 TYR A 126 143.14 REMARK 500 GLY A 198 HIS A 199 -140.53 REMARK 500 GLY A 218 ARG A 219 -147.47 REMARK 500 ASN B 116 PHE B 117 -148.84 REMARK 500 PHE B 117 ASN B 118 146.05 REMARK 500 GLN B 122 MET B 123 135.10 REMARK 500 LYS B 125 TYR B 126 141.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 4KM3 A 1 286 UNP B2IQ22 B2IQ22_STRPS 1 286 DBREF 4KM3 B 1 286 UNP B2IQ22 B2IQ22_STRPS 1 286 SEQRES 1 A 286 MET ILE THR LEU LYS SER ALA ARG GLU ILE GLU ALA MET SEQRES 2 A 286 ASP LYS ALA GLY ASP PHE LEU ALA SER ILE HIS ILE GLY SEQRES 3 A 286 LEU ARG ASP LEU ILE LYS PRO GLY VAL ASP MET TRP GLU SEQRES 4 A 286 VAL GLU GLU TYR VAL ARG ARG ARG CYS LYS GLU GLU ASN SEQRES 5 A 286 PHE LEU PRO LEU GLN ILE GLY VAL ASP GLY ALA MET MET SEQRES 6 A 286 ASP TYR PRO TYR ALA THR CYS CYS SER LEU ASN ASP GLU SEQRES 7 A 286 VAL ALA HIS ALA PHE PRO ARG HIS TYR ILE LEU LYS ASP SEQRES 8 A 286 GLY ASP LEU LEU LYS VAL ASP MET VAL LEU GLY GLY PRO SEQRES 9 A 286 ILE ALA LYS SER ASP LEU ASN VAL SER LYS LEU ASN PHE SEQRES 10 A 286 ASN ASN VAL GLU GLN MET LYS LYS TYR THR GLN SER TYR SEQRES 11 A 286 SER GLY GLY LEU ALA ASP SER CYS TRP ALA TYR ALA VAL SEQRES 12 A 286 GLY THR PRO SER GLU GLU VAL LYS ASN LEU MET ASP ILE SEQRES 13 A 286 THR LYS GLU ALA MET TYR LYS GLY ILE GLU GLN ALA VAL SEQRES 14 A 286 VAL GLY ASN ARG ILE GLY ASP ILE GLY ALA ALA ILE GLN SEQRES 15 A 286 GLU TYR ALA GLU SER ARG GLY TYR GLY VAL VAL ARG ASP SEQRES 16 A 286 LEU VAL GLY HIS GLY VAL GLY PRO THR MET HIS GLU GLU SEQRES 17 A 286 PRO MET VAL PRO ASN TYR GLY ILE ALA GLY ARG GLY LEU SEQRES 18 A 286 ARG LEU ARG GLU GLY MET VAL LEU THR ILE GLU PRO MET SEQRES 19 A 286 ILE ASN THR GLY ASP TRP GLU ILE ASP THR ASP MET LYS SEQRES 20 A 286 THR GLY TRP ALA HIS LYS THR ILE ASP GLY GLY LEU SER SEQRES 21 A 286 CYS GLN TYR GLU HIS GLN PHE VAL ILE THR LYS ASP GLY SEQRES 22 A 286 PRO VAL ILE LEU THR SER GLN GLY GLU GLU GLY THR TYR SEQRES 1 B 286 MET ILE THR LEU LYS SER ALA ARG GLU ILE GLU ALA MET SEQRES 2 B 286 ASP LYS ALA GLY ASP PHE LEU ALA SER ILE HIS ILE GLY SEQRES 3 B 286 LEU ARG ASP LEU ILE LYS PRO GLY VAL ASP MET TRP GLU SEQRES 4 B 286 VAL GLU GLU TYR VAL ARG ARG ARG CYS LYS GLU GLU ASN SEQRES 5 B 286 PHE LEU PRO LEU GLN ILE GLY VAL ASP GLY ALA MET MET SEQRES 6 B 286 ASP TYR PRO TYR ALA THR CYS CYS SER LEU ASN ASP GLU SEQRES 7 B 286 VAL ALA HIS ALA PHE PRO ARG HIS TYR ILE LEU LYS ASP SEQRES 8 B 286 GLY ASP LEU LEU LYS VAL ASP MET VAL LEU GLY GLY PRO SEQRES 9 B 286 ILE ALA LYS SER ASP LEU ASN VAL SER LYS LEU ASN PHE SEQRES 10 B 286 ASN ASN VAL GLU GLN MET LYS LYS TYR THR GLN SER TYR SEQRES 11 B 286 SER GLY GLY LEU ALA ASP SER CYS TRP ALA TYR ALA VAL SEQRES 12 B 286 GLY THR PRO SER GLU GLU VAL LYS ASN LEU MET ASP ILE SEQRES 13 B 286 THR LYS GLU ALA MET TYR LYS GLY ILE GLU GLN ALA VAL SEQRES 14 B 286 VAL GLY ASN ARG ILE GLY ASP ILE GLY ALA ALA ILE GLN SEQRES 15 B 286 GLU TYR ALA GLU SER ARG GLY TYR GLY VAL VAL ARG ASP SEQRES 16 B 286 LEU VAL GLY HIS GLY VAL GLY PRO THR MET HIS GLU GLU SEQRES 17 B 286 PRO MET VAL PRO ASN TYR GLY ILE ALA GLY ARG GLY LEU SEQRES 18 B 286 ARG LEU ARG GLU GLY MET VAL LEU THR ILE GLU PRO MET SEQRES 19 B 286 ILE ASN THR GLY ASP TRP GLU ILE ASP THR ASP MET LYS SEQRES 20 B 286 THR GLY TRP ALA HIS LYS THR ILE ASP GLY GLY LEU SER SEQRES 21 B 286 CYS GLN TYR GLU HIS GLN PHE VAL ILE THR LYS ASP GLY SEQRES 22 B 286 PRO VAL ILE LEU THR SER GLN GLY GLU GLU GLY THR TYR FORMUL 3 HOH *20(H2 O) HELIX 1 1 SER A 6 ILE A 31 1 26 HELIX 2 2 MET A 37 GLU A 51 1 15 HELIX 3 3 SER A 147 ALA A 168 1 22 HELIX 4 4 ARG A 173 SER A 187 1 15 HELIX 5 5 VAL A 197 GLY A 202 1 6 HELIX 6 6 SER B 6 ASP B 29 1 24 HELIX 7 7 TRP B 38 GLU B 51 1 14 HELIX 8 8 SER B 147 GLN B 167 1 21 HELIX 9 9 ILE B 174 SER B 187 1 14 SHEET 1 A 3 LEU A 54 PRO A 55 0 SHEET 2 A 3 LEU A 94 GLY A 102 -1 O GLY A 102 N LEU A 54 SHEET 3 A 3 LEU A 134 ASP A 136 -1 O ALA A 135 N LEU A 101 SHEET 1 B 3 THR A 71 LEU A 75 0 SHEET 2 B 3 LEU A 94 GLY A 102 -1 O LYS A 96 N SER A 74 SHEET 3 B 3 TRP A 139 ALA A 142 -1 O TRP A 139 N VAL A 97 SHEET 1 C 2 GLU A 78 ALA A 80 0 SHEET 2 C 2 HIS A 252 LYS A 253 -1 O HIS A 252 N ALA A 80 SHEET 1 D 3 TYR A 190 VAL A 192 0 SHEET 2 D 3 MET A 234 THR A 237 -1 O ASN A 236 N GLY A 191 SHEET 3 D 3 SER A 260 GLN A 262 -1 O CYS A 261 N ILE A 235 SHEET 1 E 3 VAL A 228 ILE A 231 0 SHEET 2 E 3 HIS A 265 ILE A 269 -1 O PHE A 267 N LEU A 229 SHEET 3 E 3 PRO A 274 ILE A 276 -1 O VAL A 275 N VAL A 268 SHEET 1 F 3 LEU B 54 PRO B 55 0 SHEET 2 F 3 LEU B 94 GLY B 102 -1 O GLY B 102 N LEU B 54 SHEET 3 F 3 LEU B 134 ASP B 136 -1 O ALA B 135 N LEU B 101 SHEET 1 G 3 THR B 71 LEU B 75 0 SHEET 2 G 3 LEU B 94 GLY B 102 -1 O LYS B 96 N SER B 74 SHEET 3 G 3 TRP B 139 ALA B 142 -1 O TYR B 141 N LEU B 95 SHEET 1 H 2 GLU B 78 ALA B 80 0 SHEET 2 H 2 HIS B 252 LYS B 253 -1 O HIS B 252 N VAL B 79 SHEET 1 I 3 GLY B 191 VAL B 192 0 SHEET 2 I 3 MET B 234 ASN B 236 -1 O ASN B 236 N GLY B 191 SHEET 3 I 3 SER B 260 GLN B 262 -1 O CYS B 261 N ILE B 235 SHEET 1 J 3 VAL B 228 ILE B 231 0 SHEET 2 J 3 HIS B 265 VAL B 268 -1 O PHE B 267 N LEU B 229 SHEET 3 J 3 VAL B 275 ILE B 276 -1 O VAL B 275 N VAL B 268 CISPEP 1 GLY A 103 PRO A 104 0 6.42 CISPEP 2 GLY B 103 PRO B 104 0 6.32 CRYST1 109.687 109.687 164.424 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009117 0.005264 0.000000 0.00000 SCALE2 0.000000 0.010527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006082 0.00000