HEADER PROTEIN BINDING/TRANSCRIPTION 08-MAY-13 4KMD TITLE CRYSTAL STRUCTURE OF SUFUD60-GLI1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUFU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-285, 346-484; COMPND 5 SYNONYM: SUFUH; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ZINC FINGER PROTEIN GLI1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 112-128; COMPND 11 SYNONYM: GLIOMA-ASSOCIATED ONCOGENE, ONCOGENE GLI; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUFU, UNQ650/PRO1280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS PROTEIN PEPTIDE COMPLEX, PROTEIN BINDING-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,X.QI,Z.ZHANG,G.WU REVDAT 6 08-NOV-23 4KMD 1 REMARK SEQADV REVDAT 5 15-NOV-17 4KMD 1 REMARK REVDAT 4 23-AUG-17 4KMD 1 SOURCE REMARK REVDAT 3 12-FEB-14 4KMD 1 JRNL REVDAT 2 27-NOV-13 4KMD 1 REMARK REVDAT 1 20-NOV-13 4KMD 0 JRNL AUTH Y.ZHANG,L.FU,X.QI,Z.ZHANG,Y.XIA,J.JIA,J.JIANG,Y.ZHAO,G.WU JRNL TITL STRUCTURAL INSIGHT INTO THE MUTUAL RECOGNITION AND JRNL TITL 2 REGULATION BETWEEN SUPPRESSOR OF FUSED AND GLI/CI. JRNL REF NAT COMMUN V. 4 2608 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24217340 JRNL DOI 10.1038/NCOMMS3608 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 47718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3114 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4227 ; 1.074 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;35.076 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;14.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 451 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2384 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 0.510 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3039 ; 0.978 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 1.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1186 ; 2.199 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 480 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3548 15.3384 15.9858 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0458 REMARK 3 T33: 0.0542 T12: 0.0037 REMARK 3 T13: 0.0063 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4223 L22: 0.5231 REMARK 3 L33: 1.4790 L12: 0.1738 REMARK 3 L13: -0.1521 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: 0.0424 S13: 0.0180 REMARK 3 S21: 0.0094 S22: 0.0245 S23: 0.0060 REMARK 3 S31: -0.0713 S32: 0.0936 S33: -0.0621 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2349 14.9505 12.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0517 REMARK 3 T33: 0.0422 T12: -0.0234 REMARK 3 T13: 0.0173 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 15.2211 L22: 5.5891 REMARK 3 L33: 6.1879 L12: -1.8123 REMARK 3 L13: -0.9272 L23: -1.7631 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.0643 S13: -0.4471 REMARK 3 S21: -0.0954 S22: 0.1239 S23: 0.2551 REMARK 3 S31: 0.2092 S32: -0.0866 S33: -0.0797 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 602 A 817 REMARK 3 RESIDUE RANGE : B 201 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6903 14.6143 18.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0273 REMARK 3 T33: 0.0174 T12: 0.0000 REMARK 3 T13: 0.0024 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5196 L22: 0.5268 REMARK 3 L33: 1.6476 L12: 0.3315 REMARK 3 L13: -0.3944 L23: -0.1427 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0486 S13: -0.0001 REMARK 3 S21: 0.0321 S22: 0.0148 S23: 0.0018 REMARK 3 S31: -0.0728 S32: 0.0689 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4316 2.9711 24.5234 REMARK 3 T TENSOR REMARK 3 T11: 0.4725 T22: 0.1904 REMARK 3 T33: 0.4338 T12: 0.0822 REMARK 3 T13: 0.2770 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.8401 L22: 7.3843 REMARK 3 L33: 4.3024 L12: -0.2693 REMARK 3 L13: 2.2821 L23: -4.4597 REMARK 3 S TENSOR REMARK 3 S11: -0.1260 S12: 0.1663 S13: -0.0570 REMARK 3 S21: -1.1039 S22: -0.3236 S23: -0.6501 REMARK 3 S31: 0.5735 S32: 0.3615 S33: 0.4496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4KMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KM8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.05900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.05900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.87800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.05900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.87800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.05900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 PHE A 26 REMARK 465 ALA A 27 REMARK 465 SER A 279 REMARK 465 ARG A 280 REMARK 465 PRO A 281 REMARK 465 PRO A 282 REMARK 465 GLU A 283 REMARK 465 ASP A 284 REMARK 465 ASP A 285 REMARK 465 SER A 346 REMARK 465 LEU A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 THR A 353 REMARK 465 ALA A 354 REMARK 465 ILE A 355 REMARK 465 ILE A 356 REMARK 465 PRO A 357 REMARK 465 HIS A 358 REMARK 465 THR A 451 REMARK 465 SER A 452 REMARK 465 PRO A 453 REMARK 465 GLU A 454 REMARK 465 GLU A 455 REMARK 465 PHE A 456 REMARK 465 SER A 481 REMARK 465 PRO A 482 REMARK 465 LEU A 483 REMARK 465 HIS A 484 REMARK 465 SER B 112 REMARK 465 ARG B 113 REMARK 465 CYS B 114 REMARK 465 THR B 115 REMARK 465 SER B 116 REMARK 465 PRO B 117 REMARK 465 GLY B 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 156 S1 DTT A 507 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 80.73 -150.45 REMARK 500 VAL A 104 -41.52 -142.40 REMARK 500 GLU A 152 17.41 54.65 REMARK 500 TRP A 163 -42.35 -134.41 REMARK 500 SER A 170 -150.11 -88.32 REMARK 500 TRP A 214 -106.64 -111.54 REMARK 500 ARG A 388 -67.72 -120.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KM8 RELATED DB: PDB REMARK 900 RELATED ID: 4KM9 RELATED DB: PDB REMARK 900 RELATED ID: 4KMA RELATED DB: PDB REMARK 900 RELATED ID: 4KMH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP RESIDUES 286-345 ARE DELETION. DBREF 4KMD A 1 285 UNP Q9UMX1 SUFU_HUMAN 1 285 DBREF 4KMD A 346 484 UNP Q9UMX1 SUFU_HUMAN 346 484 DBREF 4KMD B 112 128 UNP P08151 GLI1_HUMAN 112 128 SEQADV 4KMD MET A -19 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD GLY A -18 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD SER A -17 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD SER A -16 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -15 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -14 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -13 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -12 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -11 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A -10 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD SER A -9 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD SER A -8 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD GLY A -7 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD LEU A -6 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD VAL A -5 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD PRO A -4 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD ARG A -3 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD GLY A -2 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD SER A -1 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KMD HIS A 0 UNP Q9UMX1 EXPRESSION TAG SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ARG GLY SER HIS MET ALA GLU LEU ARG PRO SEQRES 3 A 444 SER GLY ALA PRO GLY PRO THR ALA PRO PRO ALA PRO GLY SEQRES 4 A 444 PRO THR ALA PRO PRO ALA PHE ALA SER LEU PHE PRO PRO SEQRES 5 A 444 GLY LEU HIS ALA ILE TYR GLY GLU CYS ARG ARG LEU TYR SEQRES 6 A 444 PRO ASP GLN PRO ASN PRO LEU GLN VAL THR ALA ILE VAL SEQRES 7 A 444 LYS TYR TRP LEU GLY GLY PRO ASP PRO LEU ASP TYR VAL SEQRES 8 A 444 SER MET TYR ARG ASN VAL GLY SER PRO SER ALA ASN ILE SEQRES 9 A 444 PRO GLU HIS TRP HIS TYR ILE SER PHE GLY LEU SER ASP SEQRES 10 A 444 LEU TYR GLY ASP ASN ARG VAL HIS GLU PHE THR GLY THR SEQRES 11 A 444 ASP GLY PRO SER GLY PHE GLY PHE GLU LEU THR PHE ARG SEQRES 12 A 444 LEU LYS ARG GLU THR GLY GLU SER ALA PRO PRO THR TRP SEQRES 13 A 444 PRO ALA GLU LEU MET GLN GLY LEU ALA ARG TYR VAL PHE SEQRES 14 A 444 GLN SER GLU ASN THR PHE CYS SER GLY ASP HIS VAL SER SEQRES 15 A 444 TRP HIS SER PRO LEU ASP ASN SER GLU SER ARG ILE GLN SEQRES 16 A 444 HIS MET LEU LEU THR GLU ASP PRO GLN MET GLN PRO VAL SEQRES 17 A 444 GLN THR PRO PHE GLY VAL VAL THR PHE LEU GLN ILE VAL SEQRES 18 A 444 GLY VAL CYS THR GLU GLU LEU HIS SER ALA GLN GLN TRP SEQRES 19 A 444 ASN GLY GLN GLY ILE LEU GLU LEU LEU ARG THR VAL PRO SEQRES 20 A 444 ILE ALA GLY GLY PRO TRP LEU ILE THR ASP MET ARG ARG SEQRES 21 A 444 GLY GLU THR ILE PHE GLU ILE ASP PRO HIS LEU GLN GLU SEQRES 22 A 444 ARG VAL ASP LYS GLY ILE GLU THR ASP GLY SER ASN LEU SEQRES 23 A 444 SER GLY VAL SER ALA LYS CYS ALA TRP ASP ASP LEU SER SEQRES 24 A 444 ARG PRO PRO GLU ASP ASP SER LEU GLU SER ASP SER SER SEQRES 25 A 444 THR ALA ILE ILE PRO HIS GLU LEU ILE ARG THR ARG GLN SEQRES 26 A 444 LEU GLU SER VAL HIS LEU LYS PHE ASN GLN GLU SER GLY SEQRES 27 A 444 ALA LEU ILE PRO LEU CYS LEU ARG GLY ARG LEU LEU HIS SEQRES 28 A 444 GLY ARG HIS PHE THR TYR LYS SER ILE THR GLY ASP MET SEQRES 29 A 444 ALA ILE THR PHE VAL SER THR GLY VAL GLU GLY ALA PHE SEQRES 30 A 444 ALA THR GLU GLU HIS PRO TYR ALA ALA HIS GLY PRO TRP SEQRES 31 A 444 LEU GLN ILE LEU LEU THR GLU GLU PHE VAL GLU LYS MET SEQRES 32 A 444 LEU GLU ASP LEU GLU ASP LEU THR SER PRO GLU GLU PHE SEQRES 33 A 444 LYS LEU PRO LYS GLU TYR SER TRP PRO GLU LYS LYS LEU SEQRES 34 A 444 LYS VAL SER ILE LEU PRO ASP VAL VAL PHE ASP SER PRO SEQRES 35 A 444 LEU HIS SEQRES 1 B 17 SER ARG CYS THR SER PRO GLY GLY SER TYR GLY HIS LEU SEQRES 2 B 17 SER ILE GLY THR HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET DTT A 507 8 HETNAM GOL GLYCEROL HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 DTT C4 H10 O2 S2 FORMUL 10 HOH *223(H2 O) HELIX 1 1 PRO A 31 TYR A 45 1 15 HELIX 2 2 LYS A 59 GLY A 63 5 5 HELIX 3 3 SER A 79 ASN A 83 5 5 HELIX 4 4 THR A 135 GLU A 152 1 18 HELIX 5 5 CYS A 204 TRP A 214 1 11 HELIX 6 6 ASN A 215 THR A 225 1 11 HELIX 7 7 VAL A 226 GLY A 230 5 5 HELIX 8 8 THR A 243 ASP A 248 1 6 HELIX 9 9 PRO A 249 GLY A 263 1 15 HELIX 10 10 ASN A 374 ALA A 379 1 6 HELIX 11 11 LEU A 380 ARG A 388 1 9 HELIX 12 12 LEU A 389 GLY A 392 5 4 HELIX 13 13 THR A 436 LEU A 447 1 12 HELIX 14 14 PRO A 465 LYS A 467 5 3 HELIX 15 15 PRO A 475 ASP A 480 5 6 SHEET 1 A 6 LEU A 52 THR A 55 0 SHEET 2 A 6 TYR A 70 ASN A 76 -1 O MET A 73 N LEU A 52 SHEET 3 A 6 HIS A 87 PHE A 93 -1 O HIS A 89 N TYR A 74 SHEET 4 A 6 PRO A 113 LYS A 125 -1 O LEU A 124 N TRP A 88 SHEET 5 A 6 GLY A 193 VAL A 203 1 O ILE A 200 N THR A 121 SHEET 6 A 6 VAL A 188 THR A 190 -1 N VAL A 188 O VAL A 195 SHEET 1 B14 LEU A 52 THR A 55 0 SHEET 2 B14 TYR A 70 ASN A 76 -1 O MET A 73 N LEU A 52 SHEET 3 B14 HIS A 87 PHE A 93 -1 O HIS A 89 N TYR A 74 SHEET 4 B14 PRO A 113 LYS A 125 -1 O LEU A 124 N TRP A 88 SHEET 5 B14 GLY A 193 VAL A 203 1 O ILE A 200 N THR A 121 SHEET 6 B14 HIS A 176 GLU A 181 -1 N THR A 180 O GLN A 199 SHEET 7 B14 HIS A 160 VAL A 161 -1 N VAL A 161 O MET A 177 SHEET 8 B14 SER B 120 HIS B 123 1 O HIS B 123 N HIS A 160 SHEET 9 B14 LEU A 266 ALA A 271 1 N SER A 270 O GLY B 122 SHEET 10 B14 PHE A 395 SER A 399 1 O LYS A 398 N VAL A 269 SHEET 11 B14 ALA A 405 VAL A 409 -1 O PHE A 408 N PHE A 395 SHEET 12 B14 TRP A 430 LEU A 434 1 O LEU A 431 N THR A 407 SHEET 13 B14 TYR A 424 HIS A 427 -1 N ALA A 425 O GLN A 432 SHEET 14 B14 ARG A 364 GLN A 365 -1 N ARG A 364 O ALA A 426 SHEET 1 C 4 CYS A 273 ASP A 276 0 SHEET 2 C 4 VAL A 369 PHE A 373 -1 O LYS A 372 N ALA A 274 SHEET 3 C 4 LEU A 469 ILE A 473 1 O LYS A 470 N LEU A 371 SHEET 4 C 4 LYS A 460 TRP A 464 -1 N TYR A 462 O VAL A 471 CISPEP 1 LEU A 458 PRO A 459 0 2.33 SITE 1 AC1 3 GLU A 367 PRO A 423 HOH A 795 SITE 1 AC2 8 PHE A 116 GLY A 117 PHE A 118 THR A 154 SITE 2 AC2 8 PHE A 155 THR A 196 DTT A 507 HOH A 660 SITE 1 AC3 6 HIS A 105 PHE A 116 GLU A 367 HOH A 736 SITE 2 AC3 6 HOH A 750 HOH A 768 SITE 1 AC4 8 LEU A 34 TYR A 38 GLN A 53 ILE A 57 SITE 2 AC4 8 LYS A 59 TYR A 70 HOH A 704 HOH A 814 SITE 1 AC5 6 TYR A 38 ARG A 42 GLN A 48 PRO A 49 SITE 2 AC5 6 TYR A 74 HOH A 790 SITE 1 AC6 4 LEU A 29 PHE A 30 LEU A 62 PRO A 227 SITE 1 AC7 3 CYS A 156 GOL A 502 HOH A 649 CRYST1 70.830 82.118 149.756 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006678 0.00000