data_4KMF # _entry.id 4KMF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KMF pdb_00004kmf 10.2210/pdb4kmf/pdb NDB NA2424 ? ? RCSB RCSB079520 ? ? WWPDB D_1000079520 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-03 2 'Structure model' 1 1 2014-06-18 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2020-01-29 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' software 3 4 'Structure model' ndb_struct_na_base_pair_step 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_assembly_gen 6 4 'Structure model' pdbx_struct_assembly_prop 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 3 'Structure model' '_software.name' 4 4 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4KMF _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, D.' 1 'Kim, K.K.' 2 # _citation.id primary _citation.title 'Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 5937 _citation.page_last 5948 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24682817 _citation.pdbx_database_id_DOI 10.1093/nar/gku189 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, D.' 1 ? primary 'Hur, J.' 2 ? primary 'Park, K.' 3 ? primary 'Bae, S.' 4 ? primary 'Shin, D.' 5 ? primary 'Ha, S.C.' 6 ? primary 'Hwang, H.Y.' 7 ? primary 'Hohng, S.' 8 ? primary 'Lee, J.H.' 9 ? primary 'Lee, S.' 10 ? primary 'Kim, Y.G.' 11 ? primary 'Kim, K.K.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Interferon-inducible and double-stranded-dependent eIF-2kinase' 7198.205 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') ; 2114.398 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 water nat water 18.015 70 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SAETQMERKIIDFLRQNGKSIALTIAKEIGLDKSTVNRHLYNLQRSNQVFNSNEKPPVWDLM SAETQMERKIIDFLRQNGKSIALTIAKEIGLDKSTVNRHLYNLQRSNQVFNSNEKPPVWDLM A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DG)(DC)(DG)' TCGCGCG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 GLU n 1 4 THR n 1 5 GLN n 1 6 MET n 1 7 GLU n 1 8 ARG n 1 9 LYS n 1 10 ILE n 1 11 ILE n 1 12 ASP n 1 13 PHE n 1 14 LEU n 1 15 ARG n 1 16 GLN n 1 17 ASN n 1 18 GLY n 1 19 LYS n 1 20 SER n 1 21 ILE n 1 22 ALA n 1 23 LEU n 1 24 THR n 1 25 ILE n 1 26 ALA n 1 27 LYS n 1 28 GLU n 1 29 ILE n 1 30 GLY n 1 31 LEU n 1 32 ASP n 1 33 LYS n 1 34 SER n 1 35 THR n 1 36 VAL n 1 37 ASN n 1 38 ARG n 1 39 HIS n 1 40 LEU n 1 41 TYR n 1 42 ASN n 1 43 LEU n 1 44 GLN n 1 45 ARG n 1 46 SER n 1 47 ASN n 1 48 GLN n 1 49 VAL n 1 50 PHE n 1 51 ASN n 1 52 SER n 1 53 ASN n 1 54 GLU n 1 55 LYS n 1 56 PRO n 1 57 PRO n 1 58 VAL n 1 59 TRP n 1 60 ASP n 1 61 LEU n 1 62 MET n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Goldfish _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'codon optimized' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Carassius auratus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7957 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'synthetic oligonucleotide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 ALA 2 3 3 ALA ALA A . n A 1 3 GLU 3 4 4 GLU GLU A . n A 1 4 THR 4 5 5 THR THR A . n A 1 5 GLN 5 6 6 GLN GLN A . n A 1 6 MET 6 7 7 MET MET A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 ARG 8 9 9 ARG ARG A . n A 1 9 LYS 9 10 10 LYS LYS A . n A 1 10 ILE 10 11 11 ILE ILE A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 ASP 12 13 13 ASP ASP A . n A 1 13 PHE 13 14 14 PHE PHE A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 ARG 15 16 16 ARG ARG A . n A 1 16 GLN 16 17 17 GLN GLN A . n A 1 17 ASN 17 18 18 ASN ASN A . n A 1 18 GLY 18 19 19 GLY GLY A . n A 1 19 LYS 19 20 20 LYS LYS A . n A 1 20 SER 20 21 21 SER SER A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 LEU 23 24 24 LEU LEU A . n A 1 24 THR 24 25 25 THR THR A . n A 1 25 ILE 25 26 26 ILE ILE A . n A 1 26 ALA 26 27 27 ALA ALA A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 GLU 28 29 29 GLU GLU A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 GLY 30 31 31 GLY GLY A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 LYS 33 34 34 LYS LYS A . n A 1 34 SER 34 35 35 SER SER A . n A 1 35 THR 35 36 36 THR THR A . n A 1 36 VAL 36 37 37 VAL VAL A . n A 1 37 ASN 37 38 38 ASN ASN A . n A 1 38 ARG 38 39 39 ARG ARG A . n A 1 39 HIS 39 40 40 HIS HIS A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 TYR 41 42 42 TYR TYR A . n A 1 42 ASN 42 43 43 ASN ASN A . n A 1 43 LEU 43 44 44 LEU LEU A . n A 1 44 GLN 44 45 45 GLN GLN A . n A 1 45 ARG 45 46 46 ARG ARG A . n A 1 46 SER 46 47 47 SER SER A . n A 1 47 ASN 47 48 48 ASN ASN A . n A 1 48 GLN 48 49 49 GLN GLN A . n A 1 49 VAL 49 50 50 VAL VAL A . n A 1 50 PHE 50 51 51 PHE PHE A . n A 1 51 ASN 51 52 52 ASN ASN A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 ASN 53 54 54 ASN ASN A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 LYS 55 56 56 LYS LYS A . n A 1 56 PRO 56 57 57 PRO PRO A . n A 1 57 PRO 57 58 58 PRO PRO A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 TRP 59 60 60 TRP TRP A . n A 1 60 ASP 60 61 61 ASP ASP A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 MET 62 63 63 MET MET A . n B 2 1 DT 1 62 62 DT T B . n B 2 2 DC 2 63 63 DC C B . n B 2 3 DG 3 64 64 DG G B . n B 2 4 DC 4 65 65 DC C B . n B 2 5 DG 5 66 66 DG G B . n B 2 6 DC 6 67 67 DC C B . n B 2 7 DG 7 68 68 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN 1 101 1 MN MN B . D 4 HOH 1 101 4 HOH HOH A . D 4 HOH 2 102 6 HOH HOH A . D 4 HOH 3 103 7 HOH HOH A . D 4 HOH 4 104 8 HOH HOH A . D 4 HOH 5 105 11 HOH HOH A . D 4 HOH 6 106 18 HOH HOH A . D 4 HOH 7 107 21 HOH HOH A . D 4 HOH 8 108 23 HOH HOH A . D 4 HOH 9 109 24 HOH HOH A . D 4 HOH 10 110 25 HOH HOH A . D 4 HOH 11 111 27 HOH HOH A . D 4 HOH 12 112 28 HOH HOH A . D 4 HOH 13 113 29 HOH HOH A . D 4 HOH 14 114 32 HOH HOH A . D 4 HOH 15 115 33 HOH HOH A . D 4 HOH 16 116 34 HOH HOH A . D 4 HOH 17 117 35 HOH HOH A . D 4 HOH 18 118 36 HOH HOH A . D 4 HOH 19 119 37 HOH HOH A . D 4 HOH 20 120 40 HOH HOH A . D 4 HOH 21 121 41 HOH HOH A . D 4 HOH 22 122 42 HOH HOH A . D 4 HOH 23 123 46 HOH HOH A . D 4 HOH 24 124 49 HOH HOH A . D 4 HOH 25 125 50 HOH HOH A . D 4 HOH 26 126 51 HOH HOH A . D 4 HOH 27 127 52 HOH HOH A . D 4 HOH 28 128 54 HOH HOH A . D 4 HOH 29 129 55 HOH HOH A . D 4 HOH 30 130 56 HOH HOH A . D 4 HOH 31 131 57 HOH HOH A . D 4 HOH 32 132 61 HOH HOH A . D 4 HOH 33 133 64 HOH HOH A . D 4 HOH 34 134 65 HOH HOH A . D 4 HOH 35 135 66 HOH HOH A . D 4 HOH 36 136 79 HOH HOH A . D 4 HOH 37 137 80 HOH HOH A . D 4 HOH 38 138 81 HOH HOH A . D 4 HOH 39 139 82 HOH HOH A . D 4 HOH 40 140 85 HOH HOH A . D 4 HOH 41 141 87 HOH HOH A . D 4 HOH 42 142 88 HOH HOH A . D 4 HOH 43 143 96 HOH HOH A . E 4 HOH 1 201 1 HOH HOH B . E 4 HOH 2 202 2 HOH HOH B . E 4 HOH 3 203 3 HOH HOH B . E 4 HOH 4 204 5 HOH HOH B . E 4 HOH 5 205 9 HOH HOH B . E 4 HOH 6 206 10 HOH HOH B . E 4 HOH 7 207 12 HOH HOH B . E 4 HOH 8 208 13 HOH HOH B . E 4 HOH 9 209 14 HOH HOH B . E 4 HOH 10 210 15 HOH HOH B . E 4 HOH 11 211 16 HOH HOH B . E 4 HOH 12 212 17 HOH HOH B . E 4 HOH 13 213 19 HOH HOH B . E 4 HOH 14 214 20 HOH HOH B . E 4 HOH 15 215 22 HOH HOH B . E 4 HOH 16 216 26 HOH HOH B . E 4 HOH 17 217 30 HOH HOH B . E 4 HOH 18 218 31 HOH HOH B . E 4 HOH 19 219 38 HOH HOH B . E 4 HOH 20 220 39 HOH HOH B . E 4 HOH 21 221 43 HOH HOH B . E 4 HOH 22 222 44 HOH HOH B . E 4 HOH 23 223 45 HOH HOH B . E 4 HOH 24 224 47 HOH HOH B . E 4 HOH 25 225 58 HOH HOH B . E 4 HOH 26 226 78 HOH HOH B . E 4 HOH 27 227 101 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 16 ? CG ? A ARG 15 CG 2 1 Y 1 A ARG 16 ? CD ? A ARG 15 CD 3 1 Y 1 A ARG 16 ? NE ? A ARG 15 NE 4 1 Y 1 A ARG 16 ? CZ ? A ARG 15 CZ 5 1 Y 1 A ARG 16 ? NH1 ? A ARG 15 NH1 6 1 Y 1 A ARG 16 ? NH2 ? A ARG 15 NH2 7 1 Y 1 A GLN 17 ? CG ? A GLN 16 CG 8 1 Y 1 A GLN 17 ? CD ? A GLN 16 CD 9 1 Y 1 A GLN 17 ? OE1 ? A GLN 16 OE1 10 1 Y 1 A GLN 17 ? NE2 ? A GLN 16 NE2 11 1 Y 1 A LYS 28 ? CG ? A LYS 27 CG 12 1 Y 1 A LYS 28 ? CD ? A LYS 27 CD 13 1 Y 1 A LYS 28 ? CE ? A LYS 27 CE 14 1 Y 1 A LYS 28 ? NZ ? A LYS 27 NZ 15 1 Y 1 B DT 62 ? "O5'" ? B DT 1 "O5'" # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 55.367 _cell.length_b 49.471 _cell.length_c 29.585 _cell.angle_alpha 90.000 _cell.angle_beta 97.220 _cell.angle_gamma 90.000 _cell.entry_id 4KMF _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4KMF _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4KMF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details '30% PEG1500, 15 mM MnCl2, vapor diffusion, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A # _reflns.entry_id 4KMF _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 8549 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 15.400 _reflns.pdbx_chi_squared 3.175 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 97.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.700 1.730 ? ? ? 0.325 ? ? 1.802 3.000 ? 399 89.900 1 1 1.730 1.760 ? ? ? 0.272 ? ? 1.892 3.200 ? 407 94.900 2 1 1.760 1.790 ? ? ? 0.246 ? ? 1.879 3.300 ? 415 96.500 3 1 1.790 1.830 ? ? ? 0.217 ? ? 2.052 3.400 ? 434 99.300 4 1 1.830 1.870 ? ? ? 0.182 ? ? 2.163 3.500 ? 439 100.000 5 1 1.870 1.910 ? ? ? 0.166 ? ? 2.486 3.600 ? 427 99.800 6 1 1.910 1.960 ? ? ? 0.147 ? ? 2.267 3.700 ? 444 100.000 7 1 1.960 2.020 ? ? ? 0.133 ? ? 2.491 3.600 ? 427 99.800 8 1 2.020 2.070 ? ? ? 0.116 ? ? 2.715 3.700 ? 444 100.000 9 1 2.070 2.140 ? ? ? 0.109 ? ? 3.019 3.600 ? 443 99.800 10 1 2.140 2.220 ? ? ? 0.095 ? ? 3.170 3.700 ? 421 100.000 11 1 2.220 2.310 ? ? ? 0.090 ? ? 3.457 3.600 ? 448 100.000 12 1 2.310 2.410 ? ? ? 0.088 ? ? 3.607 3.600 ? 428 100.000 13 1 2.410 2.540 ? ? ? 0.082 ? ? 3.821 3.600 ? 430 100.000 14 1 2.540 2.700 ? ? ? 0.076 ? ? 3.770 3.600 ? 453 99.600 15 1 2.700 2.910 ? ? ? 0.071 ? ? 4.390 3.500 ? 439 99.500 16 1 2.910 3.200 ? ? ? 0.043 ? ? 4.759 3.100 ? 424 97.000 17 1 3.200 3.660 ? ? ? 0.037 ? ? 4.762 2.900 ? 412 93.400 18 1 3.660 4.610 ? ? ? 0.034 ? ? 5.100 2.800 ? 402 90.500 19 1 4.610 50.000 ? ? ? 0.035 ? ? 5.115 2.800 ? 413 90.000 20 1 # _refine.entry_id 4KMF _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 27.4600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.3200 _refine.ls_number_reflns_obs 8535 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1729 _refine.ls_R_factor_R_work 0.1704 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2269 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 404 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.5162 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0100 _refine.aniso_B[2][2] 0.0100 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0100 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1840 _refine.pdbx_overall_ESU_R_Free 0.1160 _refine.overall_SU_ML 0.0720 _refine.overall_SU_B 4.8400 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 57.770 _refine.B_iso_min 13.470 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 490 _refine_hist.pdbx_number_atoms_nucleic_acid 139 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 700 _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 27.4600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 652 0.014 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 909 1.602 2.226 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 61 5.686 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 24 41.838 25.417 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 92 15.305 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 18.651 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 104 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 442 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 309 1.281 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 498 2.244 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 343 3.734 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 411 5.250 4.500 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 652 2.044 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7020 _refine_ls_shell.d_res_low 1.7460 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 91.4100 _refine_ls_shell.number_reflns_R_work 567 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2230 _refine_ls_shell.R_factor_R_free 0.3190 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 596 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KMF _struct.title 'Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KMF _struct_keywords.text 'Zalpha, Z-DNA, PKZ, goldfish, TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q7T2M9_CARAU Q7T2M9 1 SAETQMERKIIDFLRQNGKSIALTIAKEIGLDKSTVNRHLYNLQRSNQVFNSNEKPPVWDLM 2 ? 2 PDB 4KMF 4KMF 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KMF A 1 ? 62 ? Q7T2M9 2 ? 63 ? 2 63 2 2 4KMF B 1 ? 7 ? 4KMF 62 ? 68 ? 62 68 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2420 ? 1 MORE -30 ? 1 'SSA (A^2)' 9490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -3.7182291697 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.3504173197 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLY A 18 ? SER A 2 GLY A 19 1 ? 18 HELX_P HELX_P2 2 ALA A 22 ? GLY A 30 ? ALA A 23 GLY A 31 1 ? 9 HELX_P HELX_P3 3 ASP A 32 ? SER A 46 ? ASP A 33 SER A 47 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MN . MN ? ? A HOH 102 B MN 101 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc2 metalc ? ? B DC 2 OP2 ? ? ? 1_555 C MN . MN ? ? B DC 63 B MN 101 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc3 metalc ? ? B DG 3 N7 ? ? ? 1_555 C MN . MN ? ? B DG 64 B MN 101 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc4 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? B MN 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc5 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? B MN 101 B HOH 207 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc6 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? B MN 101 B HOH 212 1_555 ? ? ? ? ? ? ? 2.091 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 63 B DG 68 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 63 B DG 68 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 63 B DG 68 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 64 B DC 67 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 64 B DC 67 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 64 B DC 67 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 65 B DG 66 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 65 B DG 66 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 65 B DG 66 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 66 B DC 65 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 66 B DC 65 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 66 B DC 65 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 67 B DG 64 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 67 B DG 64 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 67 B DG 64 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 68 B DC 63 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 68 B DC 63 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 68 B DC 63 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 102 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 OP2 ? B DC 2 ? B DC 63 ? 1_555 88.8 ? 2 O ? D HOH . ? A HOH 102 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 N7 ? B DG 3 ? B DG 64 ? 1_555 91.5 ? 3 OP2 ? B DC 2 ? B DC 63 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 N7 ? B DG 3 ? B DG 64 ? 1_555 87.5 ? 4 O ? D HOH . ? A HOH 102 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 177.2 ? 5 OP2 ? B DC 2 ? B DC 63 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 93.6 ? 6 N7 ? B DG 3 ? B DG 64 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 90.1 ? 7 O ? D HOH . ? A HOH 102 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 207 ? 1_555 87.1 ? 8 OP2 ? B DC 2 ? B DC 63 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 207 ? 1_555 92.1 ? 9 N7 ? B DG 3 ? B DG 64 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 207 ? 1_555 178.6 ? 10 O ? E HOH . ? B HOH 206 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 207 ? 1_555 91.3 ? 11 O ? D HOH . ? A HOH 102 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 212 ? 1_555 87.4 ? 12 OP2 ? B DC 2 ? B DC 63 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 212 ? 1_555 174.4 ? 13 N7 ? B DG 3 ? B DG 64 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 212 ? 1_555 88.5 ? 14 O ? E HOH . ? B HOH 206 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 212 ? 1_555 90.3 ? 15 O ? E HOH . ? B HOH 207 ? 1_555 MN ? C MN . ? B MN 101 ? 1_555 O ? E HOH . ? B HOH 212 ? 1_555 91.8 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 55 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 56 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 56 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 57 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.23 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 20 ? ILE A 21 ? SER A 21 ILE A 22 A 2 VAL A 58 ? LEU A 61 ? VAL A 59 LEU A 62 A 3 VAL A 49 ? ASN A 51 ? VAL A 50 ASN A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 20 ? N SER A 21 O TRP A 59 ? O TRP A 60 A 2 3 O ASP A 60 ? O ASP A 61 N PHE A 50 ? N PHE A 51 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MN _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MN B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 102 . ? 1_555 ? 2 AC1 6 DC B 2 ? DC B 63 . ? 1_555 ? 3 AC1 6 DG B 3 ? DG B 64 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 206 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 207 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 212 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 64 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 64 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 64 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 103.77 _pdbx_validate_rmsd_angle.angle_target_value 108.00 _pdbx_validate_rmsd_angle.angle_deviation -4.23 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 GLN N N N N 181 GLN CA C N S 182 GLN C C N N 183 GLN O O N N 184 GLN CB C N N 185 GLN CG C N N 186 GLN CD C N N 187 GLN OE1 O N N 188 GLN NE2 N N N 189 GLN OXT O N N 190 GLN H H N N 191 GLN H2 H N N 192 GLN HA H N N 193 GLN HB2 H N N 194 GLN HB3 H N N 195 GLN HG2 H N N 196 GLN HG3 H N N 197 GLN HE21 H N N 198 GLN HE22 H N N 199 GLN HXT H N N 200 GLU N N N N 201 GLU CA C N S 202 GLU C C N N 203 GLU O O N N 204 GLU CB C N N 205 GLU CG C N N 206 GLU CD C N N 207 GLU OE1 O N N 208 GLU OE2 O N N 209 GLU OXT O N N 210 GLU H H N N 211 GLU H2 H N N 212 GLU HA H N N 213 GLU HB2 H N N 214 GLU HB3 H N N 215 GLU HG2 H N N 216 GLU HG3 H N N 217 GLU HE2 H N N 218 GLU HXT H N N 219 GLY N N N N 220 GLY CA C N N 221 GLY C C N N 222 GLY O O N N 223 GLY OXT O N N 224 GLY H H N N 225 GLY H2 H N N 226 GLY HA2 H N N 227 GLY HA3 H N N 228 GLY HXT H N N 229 HIS N N N N 230 HIS CA C N S 231 HIS C C N N 232 HIS O O N N 233 HIS CB C N N 234 HIS CG C Y N 235 HIS ND1 N Y N 236 HIS CD2 C Y N 237 HIS CE1 C Y N 238 HIS NE2 N Y N 239 HIS OXT O N N 240 HIS H H N N 241 HIS H2 H N N 242 HIS HA H N N 243 HIS HB2 H N N 244 HIS HB3 H N N 245 HIS HD1 H N N 246 HIS HD2 H N N 247 HIS HE1 H N N 248 HIS HE2 H N N 249 HIS HXT H N N 250 HOH O O N N 251 HOH H1 H N N 252 HOH H2 H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 MN MN MN N N 343 PHE N N N N 344 PHE CA C N S 345 PHE C C N N 346 PHE O O N N 347 PHE CB C N N 348 PHE CG C Y N 349 PHE CD1 C Y N 350 PHE CD2 C Y N 351 PHE CE1 C Y N 352 PHE CE2 C Y N 353 PHE CZ C Y N 354 PHE OXT O N N 355 PHE H H N N 356 PHE H2 H N N 357 PHE HA H N N 358 PHE HB2 H N N 359 PHE HB3 H N N 360 PHE HD1 H N N 361 PHE HD2 H N N 362 PHE HE1 H N N 363 PHE HE2 H N N 364 PHE HZ H N N 365 PHE HXT H N N 366 PRO N N N N 367 PRO CA C N S 368 PRO C C N N 369 PRO O O N N 370 PRO CB C N N 371 PRO CG C N N 372 PRO CD C N N 373 PRO OXT O N N 374 PRO H H N N 375 PRO HA H N N 376 PRO HB2 H N N 377 PRO HB3 H N N 378 PRO HG2 H N N 379 PRO HG3 H N N 380 PRO HD2 H N N 381 PRO HD3 H N N 382 PRO HXT H N N 383 SER N N N N 384 SER CA C N S 385 SER C C N N 386 SER O O N N 387 SER CB C N N 388 SER OG O N N 389 SER OXT O N N 390 SER H H N N 391 SER H2 H N N 392 SER HA H N N 393 SER HB2 H N N 394 SER HB3 H N N 395 SER HG H N N 396 SER HXT H N N 397 THR N N N N 398 THR CA C N S 399 THR C C N N 400 THR O O N N 401 THR CB C N R 402 THR OG1 O N N 403 THR CG2 C N N 404 THR OXT O N N 405 THR H H N N 406 THR H2 H N N 407 THR HA H N N 408 THR HB H N N 409 THR HG1 H N N 410 THR HG21 H N N 411 THR HG22 H N N 412 THR HG23 H N N 413 THR HXT H N N 414 TRP N N N N 415 TRP CA C N S 416 TRP C C N N 417 TRP O O N N 418 TRP CB C N N 419 TRP CG C Y N 420 TRP CD1 C Y N 421 TRP CD2 C Y N 422 TRP NE1 N Y N 423 TRP CE2 C Y N 424 TRP CE3 C Y N 425 TRP CZ2 C Y N 426 TRP CZ3 C Y N 427 TRP CH2 C Y N 428 TRP OXT O N N 429 TRP H H N N 430 TRP H2 H N N 431 TRP HA H N N 432 TRP HB2 H N N 433 TRP HB3 H N N 434 TRP HD1 H N N 435 TRP HE1 H N N 436 TRP HE3 H N N 437 TRP HZ2 H N N 438 TRP HZ3 H N N 439 TRP HH2 H N N 440 TRP HXT H N N 441 TYR N N N N 442 TYR CA C N S 443 TYR C C N N 444 TYR O O N N 445 TYR CB C N N 446 TYR CG C Y N 447 TYR CD1 C Y N 448 TYR CD2 C Y N 449 TYR CE1 C Y N 450 TYR CE2 C Y N 451 TYR CZ C Y N 452 TYR OH O N N 453 TYR OXT O N N 454 TYR H H N N 455 TYR H2 H N N 456 TYR HA H N N 457 TYR HB2 H N N 458 TYR HB3 H N N 459 TYR HD1 H N N 460 TYR HD2 H N N 461 TYR HE1 H N N 462 TYR HE2 H N N 463 TYR HH H N N 464 TYR HXT H N N 465 VAL N N N N 466 VAL CA C N S 467 VAL C C N N 468 VAL O O N N 469 VAL CB C N N 470 VAL CG1 C N N 471 VAL CG2 C N N 472 VAL OXT O N N 473 VAL H H N N 474 VAL H2 H N N 475 VAL HA H N N 476 VAL HB H N N 477 VAL HG11 H N N 478 VAL HG12 H N N 479 VAL HG13 H N N 480 VAL HG21 H N N 481 VAL HG22 H N N 482 VAL HG23 H N N 483 VAL HXT H N N 484 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DC OP3 P sing N N 70 DC OP3 HOP3 sing N N 71 DC P OP1 doub N N 72 DC P OP2 sing N N 73 DC P "O5'" sing N N 74 DC OP2 HOP2 sing N N 75 DC "O5'" "C5'" sing N N 76 DC "C5'" "C4'" sing N N 77 DC "C5'" "H5'" sing N N 78 DC "C5'" "H5''" sing N N 79 DC "C4'" "O4'" sing N N 80 DC "C4'" "C3'" sing N N 81 DC "C4'" "H4'" sing N N 82 DC "O4'" "C1'" sing N N 83 DC "C3'" "O3'" sing N N 84 DC "C3'" "C2'" sing N N 85 DC "C3'" "H3'" sing N N 86 DC "O3'" "HO3'" sing N N 87 DC "C2'" "C1'" sing N N 88 DC "C2'" "H2'" sing N N 89 DC "C2'" "H2''" sing N N 90 DC "C1'" N1 sing N N 91 DC "C1'" "H1'" sing N N 92 DC N1 C2 sing N N 93 DC N1 C6 sing N N 94 DC C2 O2 doub N N 95 DC C2 N3 sing N N 96 DC N3 C4 doub N N 97 DC C4 N4 sing N N 98 DC C4 C5 sing N N 99 DC N4 H41 sing N N 100 DC N4 H42 sing N N 101 DC C5 C6 doub N N 102 DC C5 H5 sing N N 103 DC C6 H6 sing N N 104 DG OP3 P sing N N 105 DG OP3 HOP3 sing N N 106 DG P OP1 doub N N 107 DG P OP2 sing N N 108 DG P "O5'" sing N N 109 DG OP2 HOP2 sing N N 110 DG "O5'" "C5'" sing N N 111 DG "C5'" "C4'" sing N N 112 DG "C5'" "H5'" sing N N 113 DG "C5'" "H5''" sing N N 114 DG "C4'" "O4'" sing N N 115 DG "C4'" "C3'" sing N N 116 DG "C4'" "H4'" sing N N 117 DG "O4'" "C1'" sing N N 118 DG "C3'" "O3'" sing N N 119 DG "C3'" "C2'" sing N N 120 DG "C3'" "H3'" sing N N 121 DG "O3'" "HO3'" sing N N 122 DG "C2'" "C1'" sing N N 123 DG "C2'" "H2'" sing N N 124 DG "C2'" "H2''" sing N N 125 DG "C1'" N9 sing N N 126 DG "C1'" "H1'" sing N N 127 DG N9 C8 sing Y N 128 DG N9 C4 sing Y N 129 DG C8 N7 doub Y N 130 DG C8 H8 sing N N 131 DG N7 C5 sing Y N 132 DG C5 C6 sing N N 133 DG C5 C4 doub Y N 134 DG C6 O6 doub N N 135 DG C6 N1 sing N N 136 DG N1 C2 sing N N 137 DG N1 H1 sing N N 138 DG C2 N2 sing N N 139 DG C2 N3 doub N N 140 DG N2 H21 sing N N 141 DG N2 H22 sing N N 142 DG N3 C4 sing N N 143 DT OP3 P sing N N 144 DT OP3 HOP3 sing N N 145 DT P OP1 doub N N 146 DT P OP2 sing N N 147 DT P "O5'" sing N N 148 DT OP2 HOP2 sing N N 149 DT "O5'" "C5'" sing N N 150 DT "C5'" "C4'" sing N N 151 DT "C5'" "H5'" sing N N 152 DT "C5'" "H5''" sing N N 153 DT "C4'" "O4'" sing N N 154 DT "C4'" "C3'" sing N N 155 DT "C4'" "H4'" sing N N 156 DT "O4'" "C1'" sing N N 157 DT "C3'" "O3'" sing N N 158 DT "C3'" "C2'" sing N N 159 DT "C3'" "H3'" sing N N 160 DT "O3'" "HO3'" sing N N 161 DT "C2'" "C1'" sing N N 162 DT "C2'" "H2'" sing N N 163 DT "C2'" "H2''" sing N N 164 DT "C1'" N1 sing N N 165 DT "C1'" "H1'" sing N N 166 DT N1 C2 sing N N 167 DT N1 C6 sing N N 168 DT C2 O2 doub N N 169 DT C2 N3 sing N N 170 DT N3 C4 sing N N 171 DT N3 H3 sing N N 172 DT C4 O4 doub N N 173 DT C4 C5 sing N N 174 DT C5 C7 sing N N 175 DT C5 C6 doub N N 176 DT C7 H71 sing N N 177 DT C7 H72 sing N N 178 DT C7 H73 sing N N 179 DT C6 H6 sing N N 180 GLN N CA sing N N 181 GLN N H sing N N 182 GLN N H2 sing N N 183 GLN CA C sing N N 184 GLN CA CB sing N N 185 GLN CA HA sing N N 186 GLN C O doub N N 187 GLN C OXT sing N N 188 GLN CB CG sing N N 189 GLN CB HB2 sing N N 190 GLN CB HB3 sing N N 191 GLN CG CD sing N N 192 GLN CG HG2 sing N N 193 GLN CG HG3 sing N N 194 GLN CD OE1 doub N N 195 GLN CD NE2 sing N N 196 GLN NE2 HE21 sing N N 197 GLN NE2 HE22 sing N N 198 GLN OXT HXT sing N N 199 GLU N CA sing N N 200 GLU N H sing N N 201 GLU N H2 sing N N 202 GLU CA C sing N N 203 GLU CA CB sing N N 204 GLU CA HA sing N N 205 GLU C O doub N N 206 GLU C OXT sing N N 207 GLU CB CG sing N N 208 GLU CB HB2 sing N N 209 GLU CB HB3 sing N N 210 GLU CG CD sing N N 211 GLU CG HG2 sing N N 212 GLU CG HG3 sing N N 213 GLU CD OE1 doub N N 214 GLU CD OE2 sing N N 215 GLU OE2 HE2 sing N N 216 GLU OXT HXT sing N N 217 GLY N CA sing N N 218 GLY N H sing N N 219 GLY N H2 sing N N 220 GLY CA C sing N N 221 GLY CA HA2 sing N N 222 GLY CA HA3 sing N N 223 GLY C O doub N N 224 GLY C OXT sing N N 225 GLY OXT HXT sing N N 226 HIS N CA sing N N 227 HIS N H sing N N 228 HIS N H2 sing N N 229 HIS CA C sing N N 230 HIS CA CB sing N N 231 HIS CA HA sing N N 232 HIS C O doub N N 233 HIS C OXT sing N N 234 HIS CB CG sing N N 235 HIS CB HB2 sing N N 236 HIS CB HB3 sing N N 237 HIS CG ND1 sing Y N 238 HIS CG CD2 doub Y N 239 HIS ND1 CE1 doub Y N 240 HIS ND1 HD1 sing N N 241 HIS CD2 NE2 sing Y N 242 HIS CD2 HD2 sing N N 243 HIS CE1 NE2 sing Y N 244 HIS CE1 HE1 sing N N 245 HIS NE2 HE2 sing N N 246 HIS OXT HXT sing N N 247 HOH O H1 sing N N 248 HOH O H2 sing N N 249 ILE N CA sing N N 250 ILE N H sing N N 251 ILE N H2 sing N N 252 ILE CA C sing N N 253 ILE CA CB sing N N 254 ILE CA HA sing N N 255 ILE C O doub N N 256 ILE C OXT sing N N 257 ILE CB CG1 sing N N 258 ILE CB CG2 sing N N 259 ILE CB HB sing N N 260 ILE CG1 CD1 sing N N 261 ILE CG1 HG12 sing N N 262 ILE CG1 HG13 sing N N 263 ILE CG2 HG21 sing N N 264 ILE CG2 HG22 sing N N 265 ILE CG2 HG23 sing N N 266 ILE CD1 HD11 sing N N 267 ILE CD1 HD12 sing N N 268 ILE CD1 HD13 sing N N 269 ILE OXT HXT sing N N 270 LEU N CA sing N N 271 LEU N H sing N N 272 LEU N H2 sing N N 273 LEU CA C sing N N 274 LEU CA CB sing N N 275 LEU CA HA sing N N 276 LEU C O doub N N 277 LEU C OXT sing N N 278 LEU CB CG sing N N 279 LEU CB HB2 sing N N 280 LEU CB HB3 sing N N 281 LEU CG CD1 sing N N 282 LEU CG CD2 sing N N 283 LEU CG HG sing N N 284 LEU CD1 HD11 sing N N 285 LEU CD1 HD12 sing N N 286 LEU CD1 HD13 sing N N 287 LEU CD2 HD21 sing N N 288 LEU CD2 HD22 sing N N 289 LEU CD2 HD23 sing N N 290 LEU OXT HXT sing N N 291 LYS N CA sing N N 292 LYS N H sing N N 293 LYS N H2 sing N N 294 LYS CA C sing N N 295 LYS CA CB sing N N 296 LYS CA HA sing N N 297 LYS C O doub N N 298 LYS C OXT sing N N 299 LYS CB CG sing N N 300 LYS CB HB2 sing N N 301 LYS CB HB3 sing N N 302 LYS CG CD sing N N 303 LYS CG HG2 sing N N 304 LYS CG HG3 sing N N 305 LYS CD CE sing N N 306 LYS CD HD2 sing N N 307 LYS CD HD3 sing N N 308 LYS CE NZ sing N N 309 LYS CE HE2 sing N N 310 LYS CE HE3 sing N N 311 LYS NZ HZ1 sing N N 312 LYS NZ HZ2 sing N N 313 LYS NZ HZ3 sing N N 314 LYS OXT HXT sing N N 315 MET N CA sing N N 316 MET N H sing N N 317 MET N H2 sing N N 318 MET CA C sing N N 319 MET CA CB sing N N 320 MET CA HA sing N N 321 MET C O doub N N 322 MET C OXT sing N N 323 MET CB CG sing N N 324 MET CB HB2 sing N N 325 MET CB HB3 sing N N 326 MET CG SD sing N N 327 MET CG HG2 sing N N 328 MET CG HG3 sing N N 329 MET SD CE sing N N 330 MET CE HE1 sing N N 331 MET CE HE2 sing N N 332 MET CE HE3 sing N N 333 MET OXT HXT sing N N 334 PHE N CA sing N N 335 PHE N H sing N N 336 PHE N H2 sing N N 337 PHE CA C sing N N 338 PHE CA CB sing N N 339 PHE CA HA sing N N 340 PHE C O doub N N 341 PHE C OXT sing N N 342 PHE CB CG sing N N 343 PHE CB HB2 sing N N 344 PHE CB HB3 sing N N 345 PHE CG CD1 doub Y N 346 PHE CG CD2 sing Y N 347 PHE CD1 CE1 sing Y N 348 PHE CD1 HD1 sing N N 349 PHE CD2 CE2 doub Y N 350 PHE CD2 HD2 sing N N 351 PHE CE1 CZ doub Y N 352 PHE CE1 HE1 sing N N 353 PHE CE2 CZ sing Y N 354 PHE CE2 HE2 sing N N 355 PHE CZ HZ sing N N 356 PHE OXT HXT sing N N 357 PRO N CA sing N N 358 PRO N CD sing N N 359 PRO N H sing N N 360 PRO CA C sing N N 361 PRO CA CB sing N N 362 PRO CA HA sing N N 363 PRO C O doub N N 364 PRO C OXT sing N N 365 PRO CB CG sing N N 366 PRO CB HB2 sing N N 367 PRO CB HB3 sing N N 368 PRO CG CD sing N N 369 PRO CG HG2 sing N N 370 PRO CG HG3 sing N N 371 PRO CD HD2 sing N N 372 PRO CD HD3 sing N N 373 PRO OXT HXT sing N N 374 SER N CA sing N N 375 SER N H sing N N 376 SER N H2 sing N N 377 SER CA C sing N N 378 SER CA CB sing N N 379 SER CA HA sing N N 380 SER C O doub N N 381 SER C OXT sing N N 382 SER CB OG sing N N 383 SER CB HB2 sing N N 384 SER CB HB3 sing N N 385 SER OG HG sing N N 386 SER OXT HXT sing N N 387 THR N CA sing N N 388 THR N H sing N N 389 THR N H2 sing N N 390 THR CA C sing N N 391 THR CA CB sing N N 392 THR CA HA sing N N 393 THR C O doub N N 394 THR C OXT sing N N 395 THR CB OG1 sing N N 396 THR CB CG2 sing N N 397 THR CB HB sing N N 398 THR OG1 HG1 sing N N 399 THR CG2 HG21 sing N N 400 THR CG2 HG22 sing N N 401 THR CG2 HG23 sing N N 402 THR OXT HXT sing N N 403 TRP N CA sing N N 404 TRP N H sing N N 405 TRP N H2 sing N N 406 TRP CA C sing N N 407 TRP CA CB sing N N 408 TRP CA HA sing N N 409 TRP C O doub N N 410 TRP C OXT sing N N 411 TRP CB CG sing N N 412 TRP CB HB2 sing N N 413 TRP CB HB3 sing N N 414 TRP CG CD1 doub Y N 415 TRP CG CD2 sing Y N 416 TRP CD1 NE1 sing Y N 417 TRP CD1 HD1 sing N N 418 TRP CD2 CE2 doub Y N 419 TRP CD2 CE3 sing Y N 420 TRP NE1 CE2 sing Y N 421 TRP NE1 HE1 sing N N 422 TRP CE2 CZ2 sing Y N 423 TRP CE3 CZ3 doub Y N 424 TRP CE3 HE3 sing N N 425 TRP CZ2 CH2 doub Y N 426 TRP CZ2 HZ2 sing N N 427 TRP CZ3 CH2 sing Y N 428 TRP CZ3 HZ3 sing N N 429 TRP CH2 HH2 sing N N 430 TRP OXT HXT sing N N 431 TYR N CA sing N N 432 TYR N H sing N N 433 TYR N H2 sing N N 434 TYR CA C sing N N 435 TYR CA CB sing N N 436 TYR CA HA sing N N 437 TYR C O doub N N 438 TYR C OXT sing N N 439 TYR CB CG sing N N 440 TYR CB HB2 sing N N 441 TYR CB HB3 sing N N 442 TYR CG CD1 doub Y N 443 TYR CG CD2 sing Y N 444 TYR CD1 CE1 sing Y N 445 TYR CD1 HD1 sing N N 446 TYR CD2 CE2 doub Y N 447 TYR CD2 HD2 sing N N 448 TYR CE1 CZ doub Y N 449 TYR CE1 HE1 sing N N 450 TYR CE2 CZ sing Y N 451 TYR CE2 HE2 sing N N 452 TYR CZ OH sing N N 453 TYR OH HH sing N N 454 TYR OXT HXT sing N N 455 VAL N CA sing N N 456 VAL N H sing N N 457 VAL N H2 sing N N 458 VAL CA C sing N N 459 VAL CA CB sing N N 460 VAL CA HA sing N N 461 VAL C O doub N N 462 VAL C OXT sing N N 463 VAL CB CG1 sing N N 464 VAL CB CG2 sing N N 465 VAL CB HB sing N N 466 VAL CG1 HG11 sing N N 467 VAL CG1 HG12 sing N N 468 VAL CG1 HG13 sing N N 469 VAL CG2 HG21 sing N N 470 VAL CG2 HG22 sing N N 471 VAL CG2 HG23 sing N N 472 VAL OXT HXT sing N N 473 # _ndb_struct_conf_na.entry_id 4KMF _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 B DG 7 2_556 -0.307 -0.116 -0.012 1.868 -2.200 -1.542 1 B_DC63:DG68_B B 63 ? B 68 ? 19 1 1 B DG 3 1_555 B DC 6 2_556 0.382 -0.150 -0.122 -5.092 -3.023 0.521 2 B_DG64:DC67_B B 64 ? B 67 ? 19 1 1 B DC 4 1_555 B DG 5 2_556 -0.356 -0.139 -0.008 6.091 -5.444 -1.062 3 B_DC65:DG66_B B 65 ? B 66 ? 19 1 1 B DG 5 1_555 B DC 4 2_556 0.356 -0.139 -0.008 -6.091 -5.444 -1.062 4 B_DG66:DC65_B B 66 ? B 65 ? 19 1 1 B DC 6 1_555 B DG 3 2_556 -0.382 -0.150 -0.122 5.092 -3.023 0.521 5 B_DC67:DG64_B B 67 ? B 64 ? 19 1 1 B DG 7 1_555 B DC 2 2_556 0.307 -0.116 -0.012 -1.868 -2.200 -1.542 6 B_DG68:DC63_B B 68 ? B 63 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 B DG 7 2_556 B DG 3 1_555 B DC 6 2_556 0.117 5.372 3.475 -1.872 -5.149 -3.488 -3.566 -14.910 6.159 54.083 -19.657 -6.494 1 BB_DC63DG64:DC67DG68_BB B 63 ? B 68 ? B 64 ? B 67 ? 1 B DG 3 1_555 B DC 6 2_556 B DC 4 1_555 B DG 5 2_556 -0.035 -1.438 3.142 -1.414 -7.950 -46.613 2.393 -0.150 2.872 9.959 -1.771 -47.269 2 BB_DG64DC65:DG66DC67_BB B 64 ? B 67 ? B 65 ? B 66 ? 1 B DC 4 1_555 B DG 5 2_556 B DG 5 1_555 B DC 4 2_556 0.000 5.355 3.696 0.000 -6.368 -8.376 -11.086 0.000 6.181 37.297 0.000 -10.519 3 BB_DC65DG66:DC65DG66_BB B 65 ? B 66 ? B 66 ? B 65 ? 1 B DG 5 1_555 B DC 4 2_556 B DC 6 1_555 B DG 3 2_556 0.035 -1.438 3.142 1.414 -7.950 -46.613 2.393 0.150 2.872 9.959 1.771 -47.269 4 BB_DG66DC67:DG64DC65_BB B 66 ? B 65 ? B 67 ? B 64 ? 1 B DC 6 1_555 B DG 3 2_556 B DG 7 1_555 B DC 2 2_556 -0.117 5.372 3.475 1.872 -5.149 -3.488 -3.566 14.910 6.159 54.083 19.657 -6.494 5 BB_DC67DG68:DC63DG64_BB B 67 ? B 64 ? B 68 ? B 63 ? # _atom_sites.entry_id 4KMF _atom_sites.fract_transf_matrix[1][1] 0.018061 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002288 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020214 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034071 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MN N O P S # loop_