HEADER HYDROLASE 08-MAY-13 4KN5 TITLE CRYSTAL STRUCTURE OF A PUTATIVE METHYLTHIOADENOSINE NUCLEOSIDASE FROM TITLE 2 WEISSELLA PARAMESENTEROIDES ATCC 33313 (TARGET NYSGRC-029342 ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTHIOADENOSINE NUCLEOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.2.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEISSELLA PARAMESENTEROIDES; SOURCE 3 ORGANISM_TAXID: 585506; SOURCE 4 STRAIN: ATCC 33313; SOURCE 5 GENE: HMPREF0877_0999; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS 5'-METHYLTHIOADENOSINE NUCLEOSIDASE, STRUCTURAL GENOMICS, NYSGRC, NEW KEYWDS 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 2 CONSORTIUM (NYSGRC) REVDAT 3 15-NOV-17 4KN5 1 REMARK REVDAT 2 27-NOV-13 4KN5 1 KEYWDS REVDAT 1 29-MAY-13 4KN5 0 JRNL AUTH P.SAMPATHKUMAR,M.AHMED,J.ATTONITO,R.BHOSLE,J.BONANNO, JRNL AUTH 2 S.CHAMALA,S.CHOWDHURY,G.EROMENOK,A.FISER,A.S.GLENN, JRNL AUTH 3 J.HAMMONDS,B.HILLERICH,D.M.HIMMEL,K.KHAFIZOV,J.LAFLEUR, JRNL AUTH 4 J.D.LOVE,M.STEAD,R.SEIDEL,R.TORO,L.L.MORISCO,S.S.SOJITRA, JRNL AUTH 5 S.R.WASSERMAN,A.HAAPALAINEN,J.SUAREZ,V.L.SCHRAMM,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE METHYLTHIOADENOSINE JRNL TITL 2 NUCLEOSIDASE FROM WEISSELLA PARAMESENTEROIDES ATCC 33313 JRNL TITL 3 (TARGET NYSGRC-029342) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2906 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3686 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3491 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5025 ; 1.502 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8033 ; 0.792 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.301 ;25.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;13.595 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.553 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4347 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 843 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4KN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.20 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 27.70 REMARK 200 R MERGE FOR SHELL (I) : 1.98600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20MM HEPES PH7.5, 150MM NACL, REMARK 280 5% GLYCEROL, AND 5MM DTT); RESERVOIR (MCSG3 #47: 0.1 M HEPES: REMARK 280 NAOH PH 7.5, 0.8 M NAH2PO4, 0.8 M KH2PO4 ); CRYOPROTECTION (33% REMARK 280 ETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.77250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.62600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.62600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.65875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.62600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.62600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.88625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.62600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.62600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.65875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.62600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.62600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.88625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 MSE B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 GLU B 203 REMARK 465 ALA B 204 REMARK 465 GLY B 205 REMARK 465 MSE B 206 REMARK 465 THR B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MSE A 1 OD1 ASP A 42 2.13 REMARK 500 O3 GOL B 304 O HOH B 510 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 114 -2.41 76.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029342 RELATED DB: TARGETTRACK DBREF 4KN5 A 2 231 UNP C5RAK4 C5RAK4_WEIPA 2 231 DBREF 4KN5 B 2 231 UNP C5RAK4 C5RAK4_WEIPA 2 231 SEQADV 4KN5 MSE A -21 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -20 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -19 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -18 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -17 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -16 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS A -15 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER A -14 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER A -13 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLY A -12 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 VAL A -11 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 ASP A -10 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 LEU A -9 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLY A -8 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 THR A -7 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLU A -6 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 ASN A -5 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 LEU A -4 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 TYR A -3 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 PHE A -2 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLN A -1 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER A 0 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 MSE A 1 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 MSE B -21 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -20 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -19 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -18 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -17 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -16 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 HIS B -15 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER B -14 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER B -13 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLY B -12 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 VAL B -11 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 ASP B -10 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 LEU B -9 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLY B -8 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 THR B -7 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLU B -6 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 ASN B -5 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 LEU B -4 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 TYR B -3 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 PHE B -2 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 GLN B -1 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 SER B 0 UNP C5RAK4 EXPRESSION TAG SEQADV 4KN5 MSE B 1 UNP C5RAK4 EXPRESSION TAG SEQRES 1 A 253 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 253 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG TYR GLY SEQRES 3 A 253 VAL ILE ASN ALA MSE ALA GLU GLU LYS ALA ALA LEU VAL SEQRES 4 A 253 ASP ALA MSE ILE ASP GLU LYS LYS THR THR ILE ALA GLY SEQRES 5 A 253 LYS LEU PHE HIS HIS GLY LYS ILE GLY HIS VAL ASP VAL SEQRES 6 A 253 VAL VAL VAL GLU SER GLY ILE GLY LYS VAL ALA SER ALA SEQRES 7 A 253 LEU THR THR THR LEU LEU ILE THR ASN PHE GLY VAL ASP SEQRES 8 A 253 ALA VAL ILE ASN SER GLY SER ALA GLY ALA LEU GLY THR SEQRES 9 A 253 ASP LEU ARG ILE GLY ASP ILE VAL ILE ALA ASP TYR LEU SEQRES 10 A 253 ALA TYR ALA ASP ALA ASP ALA ARG ALA PHE GLY TYR ALA SEQRES 11 A 253 TYR GLY GLN VAL PRO GLN GLN PRO ALA ARG PHE LYS ALA SEQRES 12 A 253 ASP THR ASP LEU SER ASN ASP LEU SER GLU SER TYR GLU SEQRES 13 A 253 LYS VAL THR ASP ALA ARG LEU VAL ARG GLY LEU VAL VAL SEQRES 14 A 253 THR SER ASP SER PHE ILE ALA SER ASN GLU GLN LYS GLN SEQRES 15 A 253 THR ILE LEU THR HIS PHE PRO GLU ALA GLN SER ALA GLU SEQRES 16 A 253 MSE GLU GLY ALA SER ILE ALA GLN VAL ALA ASN TYR PHE SEQRES 17 A 253 ASP VAL PRO PHE ALA VAL VAL ARG ALA ILE SER ASP ASN SEQRES 18 A 253 ALA ASN GLY GLU ALA GLY MSE THR PHE ASP ASP PHE ILE SEQRES 19 A 253 VAL GLU ALA GLY GLN GLN SER ALA GLN VAL LEU ILE ASN SEQRES 20 A 253 PHE PHE GLU ALA GLN ALA SEQRES 1 B 253 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 253 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG TYR GLY SEQRES 3 B 253 VAL ILE ASN ALA MSE ALA GLU GLU LYS ALA ALA LEU VAL SEQRES 4 B 253 ASP ALA MSE ILE ASP GLU LYS LYS THR THR ILE ALA GLY SEQRES 5 B 253 LYS LEU PHE HIS HIS GLY LYS ILE GLY HIS VAL ASP VAL SEQRES 6 B 253 VAL VAL VAL GLU SER GLY ILE GLY LYS VAL ALA SER ALA SEQRES 7 B 253 LEU THR THR THR LEU LEU ILE THR ASN PHE GLY VAL ASP SEQRES 8 B 253 ALA VAL ILE ASN SER GLY SER ALA GLY ALA LEU GLY THR SEQRES 9 B 253 ASP LEU ARG ILE GLY ASP ILE VAL ILE ALA ASP TYR LEU SEQRES 10 B 253 ALA TYR ALA ASP ALA ASP ALA ARG ALA PHE GLY TYR ALA SEQRES 11 B 253 TYR GLY GLN VAL PRO GLN GLN PRO ALA ARG PHE LYS ALA SEQRES 12 B 253 ASP THR ASP LEU SER ASN ASP LEU SER GLU SER TYR GLU SEQRES 13 B 253 LYS VAL THR ASP ALA ARG LEU VAL ARG GLY LEU VAL VAL SEQRES 14 B 253 THR SER ASP SER PHE ILE ALA SER ASN GLU GLN LYS GLN SEQRES 15 B 253 THR ILE LEU THR HIS PHE PRO GLU ALA GLN SER ALA GLU SEQRES 16 B 253 MSE GLU GLY ALA SER ILE ALA GLN VAL ALA ASN TYR PHE SEQRES 17 B 253 ASP VAL PRO PHE ALA VAL VAL ARG ALA ILE SER ASP ASN SEQRES 18 B 253 ALA ASN GLY GLU ALA GLY MSE THR PHE ASP ASP PHE ILE SEQRES 19 B 253 VAL GLU ALA GLY GLN GLN SER ALA GLN VAL LEU ILE ASN SEQRES 20 B 253 PHE PHE GLU ALA GLN ALA MODRES 4KN5 MSE A 1 MET SELENOMETHIONINE MODRES 4KN5 MSE A 9 MET SELENOMETHIONINE MODRES 4KN5 MSE A 20 MET SELENOMETHIONINE MODRES 4KN5 MSE A 174 MET SELENOMETHIONINE MODRES 4KN5 MSE A 206 MET SELENOMETHIONINE MODRES 4KN5 MSE B 1 MET SELENOMETHIONINE MODRES 4KN5 MSE B 9 MET SELENOMETHIONINE MODRES 4KN5 MSE B 20 MET SELENOMETHIONINE MODRES 4KN5 MSE B 174 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 8 HET MSE A 20 13 HET MSE A 174 13 HET MSE A 206 8 HET MSE B 1 8 HET MSE B 9 8 HET MSE B 20 13 HET MSE B 174 8 HET EDO A 301 4 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET GOL B 304 12 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *239(H2 O) HELIX 1 1 MSE A 9 MSE A 20 1 12 HELIX 2 2 GLY A 51 GLY A 67 1 17 HELIX 3 3 ALA A 102 GLY A 106 5 5 HELIX 4 4 ASP A 122 THR A 137 1 16 HELIX 5 5 SER A 155 PHE A 166 1 12 HELIX 6 6 GLU A 175 PHE A 186 1 12 HELIX 7 7 THR A 207 ALA A 231 1 25 HELIX 8 8 MSE B 9 MSE B 20 1 12 HELIX 9 9 GLY B 51 GLY B 67 1 17 HELIX 10 10 ALA B 102 GLY B 106 5 5 HELIX 11 11 ASP B 122 THR B 137 1 16 HELIX 12 12 SER B 155 PHE B 166 1 12 HELIX 13 13 GLU B 175 PHE B 186 1 12 HELIX 14 14 ASP B 210 ALA B 229 1 20 SHEET 1 A 8 ILE A 21 ILE A 28 0 SHEET 2 A 8 LYS A 31 ILE A 38 -1 O PHE A 33 N THR A 26 SHEET 3 A 8 VAL A 41 GLU A 47 -1 O VAL A 45 N HIS A 34 SHEET 4 A 8 ARG A 2 ASN A 7 1 N VAL A 5 O VAL A 44 SHEET 5 A 8 ALA A 70 ALA A 77 1 O ILE A 72 N GLY A 4 SHEET 6 A 8 PHE A 190 ILE A 196 1 O ALA A 191 N ASN A 73 SHEET 7 A 8 ILE A 89 TYR A 97 -1 N VAL A 90 O ARG A 194 SHEET 8 A 8 PHE A 119 LYS A 120 -1 O PHE A 119 N LEU A 95 SHEET 1 B 9 ILE A 21 ILE A 28 0 SHEET 2 B 9 LYS A 31 ILE A 38 -1 O PHE A 33 N THR A 26 SHEET 3 B 9 VAL A 41 GLU A 47 -1 O VAL A 45 N HIS A 34 SHEET 4 B 9 ARG A 2 ASN A 7 1 N VAL A 5 O VAL A 44 SHEET 5 B 9 ALA A 70 ALA A 77 1 O ILE A 72 N GLY A 4 SHEET 6 B 9 PHE A 190 ILE A 196 1 O ALA A 191 N ASN A 73 SHEET 7 B 9 ILE A 89 TYR A 97 -1 N VAL A 90 O ARG A 194 SHEET 8 B 9 LEU A 141 THR A 148 1 O VAL A 142 N ILE A 91 SHEET 9 B 9 ALA A 169 GLU A 173 1 O GLN A 170 N LEU A 145 SHEET 1 C 9 ILE B 21 ILE B 28 0 SHEET 2 C 9 LYS B 31 ILE B 38 -1 O PHE B 33 N THR B 26 SHEET 3 C 9 VAL B 41 GLU B 47 -1 O VAL B 43 N GLY B 36 SHEET 4 C 9 ARG B 2 ASN B 7 1 N VAL B 5 O VAL B 44 SHEET 5 C 9 ALA B 70 ALA B 79 1 O ALA B 70 N GLY B 4 SHEET 6 C 9 ALA B 169 GLU B 173 -1 O ALA B 172 N GLY B 78 SHEET 7 C 9 LEU B 141 THR B 148 1 N LEU B 145 O GLN B 170 SHEET 8 C 9 ILE B 89 TYR B 97 1 N ILE B 91 O VAL B 142 SHEET 9 C 9 PHE B 119 LYS B 120 -1 O PHE B 119 N LEU B 95 SHEET 1 D 8 ILE B 21 ILE B 28 0 SHEET 2 D 8 LYS B 31 ILE B 38 -1 O PHE B 33 N THR B 26 SHEET 3 D 8 VAL B 41 GLU B 47 -1 O VAL B 43 N GLY B 36 SHEET 4 D 8 ARG B 2 ASN B 7 1 N VAL B 5 O VAL B 44 SHEET 5 D 8 ALA B 70 ALA B 79 1 O ALA B 70 N GLY B 4 SHEET 6 D 8 PHE B 190 ILE B 196 1 O ALA B 195 N GLY B 75 SHEET 7 D 8 ILE B 89 TYR B 97 -1 N VAL B 90 O ARG B 194 SHEET 8 D 8 PHE B 119 LYS B 120 -1 O PHE B 119 N LEU B 95 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.34 LINK C ALA A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N ALA A 10 1555 1555 1.33 LINK C ALA A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N ILE A 21 1555 1555 1.32 LINK C GLU A 173 N MSE A 174 1555 1555 1.34 LINK C MSE A 174 N GLU A 175 1555 1555 1.34 LINK C GLY A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N THR A 207 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C ALA B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N ALA B 10 1555 1555 1.34 LINK C ALA B 19 N MSE B 20 1555 1555 1.34 LINK C MSE B 20 N ILE B 21 1555 1555 1.33 LINK C GLU B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N GLU B 175 1555 1555 1.33 SITE 1 AC1 7 GLY A 78 ALA A 79 LEU A 80 ILE A 153 SITE 2 AC1 7 SER A 171 ALA A 172 HOH A 507 SITE 1 AC2 7 TYR A 185 LYS B 31 SER B 48 ALA B 54 SITE 2 AC2 7 THR B 58 HOH B 475 HOH B 508 SITE 1 AC3 8 ARG B 118 LEU B 145 PHE B 166 PRO B 167 SITE 2 AC3 8 GLU B 168 EDO B 303 HOH B 405 HOH B 455 SITE 1 AC4 7 ASP B 93 TYR B 94 LEU B 145 GLU B 168 SITE 2 AC4 7 EDO B 302 HOH B 405 HOH B 415 SITE 1 AC5 12 LYS A 52 ASP A 99 SER A 149 ASP A 150 SITE 2 AC5 12 HOH A 529 LYS B 52 ASP B 99 ALA B 100 SITE 3 AC5 12 SER B 149 ASP B 150 HOH B 509 HOH B 510 CRYST1 89.252 89.252 127.545 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007840 0.00000