HEADER LYASE/LYASE INHIBITOR 10-MAY-13 4KNN TITLE CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE ISOZYME XIII WITH 2- TITLE 2 CHLORO-4-[(PYRIMIDIN-2-YLSULFANYL)ACETYL]BENZENESULFONAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 13; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE XIII, CARBONIC ANHYDRASE XIII, CA- COMPND 5 XIII; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DRUG DESIGN, CARBONIC ANHYDRASE, BENZENESULFONAMIDE, METAL-BINDING, KEYWDS 2 LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SMIRNOV,E.MANAKOVA,S.GRAZULIS REVDAT 3 08-NOV-23 4KNN 1 REMARK SEQADV LINK REVDAT 2 16-MAY-18 4KNN 1 REMARK REVDAT 1 06-NOV-13 4KNN 0 JRNL AUTH E.CAPKAUSKAITE,A.ZUBRIENE,A.SMIRNOV,J.TORRESAN,M.KISONAITE, JRNL AUTH 2 J.KAZOKAITE,J.GYLYTE,V.MICHAILOVIENE,V.JOGAITE,E.MANAKOVA, JRNL AUTH 3 S.GRAZULIS,S.TUMKEVICIUS,D.MATULIS JRNL TITL BENZENESULFONAMIDES WITH PYRIMIDINE MOIETY AS INHIBITORS OF JRNL TITL 2 HUMAN CARBONIC ANHYDRASES I, II, VI, VII, XII, AND XIII JRNL REF BIOORG.MED.CHEM. V. 21 6937 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 24103428 JRNL DOI 10.1016/J.BMC.2013.09.029 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 99819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 637 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4625 ; 0.028 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6324 ; 2.577 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 6.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;32.529 ;24.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;13.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 650 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3670 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2224 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3131 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 446 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.162 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 102 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2768 ; 1.833 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4517 ; 2.814 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1857 ; 3.202 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1807 ; 4.783 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826606 REMARK 200 MONOCHROMATOR : HIGH HEAT LOAD (HHL) REMARK 200 MONOCHROMATOR: SI 111; LARGE REMARK 200 OFFSET MONOCHROMATOR (LOM): SI REMARK 200 311, SI 511 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.404 REMARK 200 RESOLUTION RANGE LOW (A) : 79.733 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : 0.26200 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2NNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM CITRATE (PH 7.0), 0.1M REMARK 280 SODIUM ACETATE (PH 4.5) AND 26% PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.09100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.73350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.73350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.09100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 LEU B 5 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 177 O HOH A 659 1.67 REMARK 500 NZ LYS A 254 O HOH A 532 2.01 REMARK 500 NH1 ARG A 93 O HOH A 607 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 135 CD GLU A 135 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 67 -177.43 -174.58 REMARK 500 ASN B 77 46.72 -94.77 REMARK 500 HIS B 105 89.44 -159.47 REMARK 500 PHE B 178 115.83 -161.81 REMARK 500 ASN B 246 46.56 -153.51 REMARK 500 LYS A 59 -54.05 -120.12 REMARK 500 SER A 67 -176.44 -177.29 REMARK 500 ASP A 73 132.36 -37.46 REMARK 500 ARG A 93 -34.35 -130.77 REMARK 500 ASN A 246 47.11 -155.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 96 NE2 REMARK 620 2 HIS B 98 NE2 101.8 REMARK 620 3 HIS B 121 ND1 112.5 96.9 REMARK 620 4 E1F B 302 N19 96.4 119.2 127.8 REMARK 620 5 E1F B 302 N19 115.8 114.2 113.5 19.6 REMARK 620 6 E1F B 302 S16 90.8 149.8 103.4 31.2 36.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 98 NE2 103.7 REMARK 620 3 HIS A 121 ND1 112.1 96.5 REMARK 620 4 E1F A 302 N19 109.9 114.1 119.0 REMARK 620 5 E1F A 302 S16 98.4 144.6 100.5 31.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E1F B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E1F A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KNI RELATED DB: PDB REMARK 900 RELATED ID: 4KNJ RELATED DB: PDB REMARK 900 RELATED ID: 4KNM RELATED DB: PDB REMARK 900 RELATED ID: 4KP5 RELATED DB: PDB REMARK 900 RELATED ID: 4KP8 RELATED DB: PDB DBREF 4KNN B 2 263 UNP Q8N1Q1 CAH13_HUMAN 1 262 DBREF 4KNN A 2 263 UNP Q8N1Q1 CAH13_HUMAN 1 262 SEQADV 4KNN MET B 1 UNP Q8N1Q1 EXPRESSION TAG SEQADV 4KNN MET A 1 UNP Q8N1Q1 EXPRESSION TAG SEQRES 1 B 263 MET MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 B 263 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 B 263 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 B 263 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 B 263 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 B 263 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 B 263 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 B 263 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 B 263 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 B 263 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 B 263 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 B 263 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 B 263 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 B 263 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 B 263 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 B 263 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 B 263 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 B 263 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 B 263 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 B 263 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 B 263 SER PHE HIS SEQRES 1 A 263 MET MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 A 263 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 A 263 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 A 263 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 A 263 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 A 263 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 A 263 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 A 263 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 A 263 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 A 263 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 A 263 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 A 263 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 A 263 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 A 263 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 A 263 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 A 263 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 A 263 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 A 263 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 A 263 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 A 263 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 A 263 SER PHE HIS HET ZN B 301 1 HET E1F B 302 42 HET CIT B 303 13 HET EDO B 304 4 HET EDO B 305 4 HET ACY B 306 4 HET ACY B 307 4 HET ACY B 308 4 HET ZN A 301 1 HET E1F A 302 21 HET CIT A 303 13 HET PEG A 304 7 HET EDO A 305 4 HETNAM ZN ZINC ION HETNAM E1F 2-CHLORO-4-[(PYRIMIDIN-2-YLSULFANYL) HETNAM 2 E1F ACETYL]BENZENESULFONAMIDE HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 E1F 2(C12 H10 CL N3 O3 S2) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 8 ACY 3(C2 H4 O2) FORMUL 14 PEG C4 H10 O3 FORMUL 16 HOH *568(H2 O) HELIX 1 1 GLY B 14 PHE B 22 1 9 HELIX 2 2 PRO B 23 GLY B 27 5 5 HELIX 3 3 SER B 132 ALA B 137 1 6 HELIX 4 4 ASN B 156 ASP B 164 1 9 HELIX 5 5 THR B 165 LYS B 170 5 6 HELIX 6 6 ASP B 182 LEU B 187 1 6 HELIX 7 7 SER B 221 ARG B 229 1 9 HELIX 8 8 GLY A 14 PHE A 21 5 8 HELIX 9 9 PHE A 22 GLY A 27 5 6 HELIX 10 10 LYS A 36 VAL A 40 5 5 HELIX 11 11 ASP A 54 SER A 56 5 3 HELIX 12 12 SER A 132 ALA A 137 1 6 HELIX 13 13 ASN A 156 GLN A 158 5 3 HELIX 14 14 LEU A 159 ASP A 164 1 6 HELIX 15 15 THR A 165 LYS A 170 5 6 HELIX 16 16 LEU A 183 LEU A 187 5 5 HELIX 17 17 SER A 221 ARG A 229 1 9 SHEET 1 A 2 GLU B 34 ILE B 35 0 SHEET 2 A 2 ILE B 110 VAL B 111 1 O ILE B 110 N ILE B 35 SHEET 1 B10 LYS B 41 TYR B 42 0 SHEET 2 B10 ARG B 259 ALA B 260 1 O ALA B 260 N LYS B 41 SHEET 3 B10 TYR B 193 GLY B 198 -1 N THR B 195 O ARG B 259 SHEET 4 B10 VAL B 209 LEU B 214 -1 O VAL B 209 N GLY B 198 SHEET 5 B10 LEU B 143 ILE B 152 1 N GLY B 147 O ILE B 212 SHEET 6 B10 ALA B 118 ASN B 126 -1 N LEU B 120 O VAL B 148 SHEET 7 B10 TYR B 90 TRP B 99 -1 N GLN B 94 O VAL B 123 SHEET 8 B10 PHE B 68 PHE B 72 -1 N VAL B 70 O VAL B 95 SHEET 9 B10 ALA B 58 ASN B 63 -1 N ILE B 60 O ASP B 71 SHEET 10 B10 GLN B 175 ARG B 177 -1 O THR B 176 N ILE B 61 SHEET 1 C 6 LEU B 49 LYS B 52 0 SHEET 2 C 6 VAL B 80 GLY B 83 -1 O ARG B 82 N SER B 50 SHEET 3 C 6 TYR B 90 TRP B 99 -1 O TYR B 90 N LEU B 81 SHEET 4 C 6 ALA B 118 ASN B 126 -1 O VAL B 123 N GLN B 94 SHEET 5 C 6 LEU B 143 ILE B 152 -1 O VAL B 148 N LEU B 120 SHEET 6 C 6 ILE B 218 ILE B 220 1 O ILE B 218 N PHE B 149 SHEET 1 D 2 GLU A 34 ILE A 35 0 SHEET 2 D 2 ILE A 110 VAL A 111 1 O ILE A 110 N ILE A 35 SHEET 1 E10 LYS A 41 TYR A 42 0 SHEET 2 E10 ARG A 259 ALA A 260 1 O ALA A 260 N LYS A 41 SHEET 3 E10 TYR A 193 GLY A 198 -1 N THR A 195 O ARG A 259 SHEET 4 E10 VAL A 209 LEU A 214 -1 O VAL A 209 N GLY A 198 SHEET 5 E10 LEU A 143 ILE A 152 1 N GLY A 147 O LEU A 214 SHEET 6 E10 ALA A 118 ASN A 126 -1 N LEU A 120 O VAL A 148 SHEET 7 E10 TYR A 90 TRP A 99 -1 N ARG A 93 O VAL A 123 SHEET 8 E10 PHE A 68 PHE A 72 -1 N VAL A 70 O VAL A 95 SHEET 9 E10 ALA A 58 ASN A 63 -1 N SER A 62 O ASN A 69 SHEET 10 E10 GLN A 175 ARG A 177 -1 O THR A 176 N ILE A 61 SHEET 1 F 6 ARG A 47 LYS A 52 0 SHEET 2 F 6 VAL A 80 GLY A 84 -1 O ARG A 82 N SER A 50 SHEET 3 F 6 TYR A 90 TRP A 99 -1 O TYR A 90 N LEU A 81 SHEET 4 F 6 ALA A 118 ASN A 126 -1 O VAL A 123 N ARG A 93 SHEET 5 F 6 LEU A 143 ILE A 152 -1 O VAL A 148 N LEU A 120 SHEET 6 F 6 ILE A 218 ILE A 220 1 O ILE A 218 N GLN A 151 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.01 LINK NE2 HIS B 98 ZN ZN B 301 1555 1555 2.08 LINK ND1 HIS B 121 ZN ZN B 301 1555 1555 2.08 LINK ZN ZN B 301 N19BE1F B 302 1555 1555 1.73 LINK ZN ZN B 301 N19AE1F B 302 1555 1555 2.10 LINK ZN ZN B 301 S16BE1F B 302 1555 1555 2.94 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 98 ZN ZN A 301 1555 1555 2.00 LINK ND1 HIS A 121 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 N19 E1F A 302 1555 1555 1.86 LINK ZN ZN A 301 S16 E1F A 302 1555 1555 3.00 CISPEP 1 SER B 31 PRO B 32 0 -3.74 CISPEP 2 PRO B 203 PRO B 204 0 13.51 CISPEP 3 SER A 31 PRO A 32 0 -0.88 CISPEP 4 PRO A 203 PRO A 204 0 12.73 SITE 1 AC1 4 HIS B 96 HIS B 98 HIS B 121 E1F B 302 SITE 1 AC2 18 ARG B 93 GLN B 94 HIS B 96 HIS B 98 SITE 2 AC2 18 HIS B 121 VAL B 123 PHE B 133 VAL B 145 SITE 3 AC2 18 SER B 199 LEU B 200 THR B 201 VAL B 202 SITE 4 AC2 18 TRP B 211 ZN B 301 HOH B 467 HOH B 601 SITE 5 AC2 18 HOH B 623 HOH B 644 SITE 1 AC3 8 HOH A 466 GLY B 100 SER B 101 HIS B 105 SITE 2 AC3 8 SER B 245 HIS B 247 HOH B 456 HOH B 529 SITE 1 AC4 7 ARG A 82 GLY A 83 PRO B 189 SER B 190 SITE 2 AC4 7 HOH B 541 HOH B 610 HOH B 680 SITE 1 AC5 5 TYR A 42 SER A 44 HIS A 263 TYR B 42 SITE 2 AC5 5 HIS B 263 SITE 1 AC6 5 TYR B 42 ASP B 43 LYS B 257 ARG B 259 SITE 2 AC6 5 ACY B 307 SITE 1 AC7 7 HOH A 444 HOH A 622 LYS B 257 ARG B 259 SITE 2 AC7 7 ACY B 306 HOH B 498 HOH B 607 SITE 1 AC8 3 ASP A 104 GLU B 76 HOH B 548 SITE 1 AC9 4 HIS A 96 HIS A 98 HIS A 121 E1F A 302 SITE 1 BC1 11 HIS A 96 HIS A 98 HIS A 121 PHE A 133 SITE 2 BC1 11 VAL A 145 LEU A 200 THR A 201 VAL A 202 SITE 3 BC1 11 TRP A 211 ZN A 301 HOH A 589 SITE 1 BC2 8 GLY A 100 SER A 101 HIS A 105 GLU A 154 SITE 2 BC2 8 SER A 245 HIS A 247 HOH A 575 HOH A 620 SITE 1 BC3 7 ASP A 28 GLN A 29 LYS A 254 ARG A 256 SITE 2 BC3 7 LYS B 59 ILE B 60 ARG B 177 SITE 1 BC4 5 LYS A 161 ARG A 177 PHE A 178 THR A 179 SITE 2 BC4 5 HOH A 476 CRYST1 56.182 57.470 159.467 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006271 0.00000