HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 13-MAY-13 4KP7 TITLE STRUCTURE OF PLASMODIUM ISPC IN COMPLEX WITH A BETA-THIA-ISOSTERE TITLE 2 DERIVATIVE OF FOSMIDOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, COMPND 3 APICOPLAST; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE, DOXP COMPND 6 REDUCTOISOMERASE, DXP REDUCTOISOMERASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 GENE: CODON OPTIMIZED FORM, DXR, SYNTHETIC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15 PREP4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQEISPCPLASART KEYWDS DXP PATHWAY, DRUG OPTIMIZATION, NON-COVALENT INHIBITION, MALARIA, KEYWDS 2 TUBERCULOSIS, ROSSMANN FOLD, REDUCTOISOMERASE, NADPH BINDING, KEYWDS 3 APICOPLAST, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KUNFERMANN,A.BACHER,M.GROLL REVDAT 4 20-SEP-23 4KP7 1 REMARK SEQADV LINK REVDAT 3 12-FEB-14 4KP7 1 JRNL REVDAT 2 30-OCT-13 4KP7 1 JRNL REVDAT 1 02-OCT-13 4KP7 0 JRNL AUTH A.KUNFERMANN,C.LIENAU,B.ILLARIONOV,J.HELD,T.GRAWERT, JRNL AUTH 2 C.T.BEHRENDT,P.WERNER,S.HAHN,W.EISENREICH,U.RIEDERER, JRNL AUTH 3 B.MORDMULLER,A.BACHER,M.FISCHER,M.GROLL,T.KURZ JRNL TITL ISPC AS TARGET FOR ANTIINFECTIVE DRUG DISCOVERY: SYNTHESIS, JRNL TITL 2 ENANTIOMERIC SEPARATION, AND STRUCTURAL BIOLOGY OF JRNL TITL 3 FOSMIDOMYCIN THIA ISOSTERS. JRNL REF J.MED.CHEM. V. 56 8151 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24032981 JRNL DOI 10.1021/JM4012559 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 49419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6468 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.41000 REMARK 3 B22 (A**2) : 4.26000 REMARK 3 B33 (A**2) : -1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6686 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9025 ; 1.200 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 808 ; 4.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 291 ;41.417 ;26.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1257 ;17.925 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1048 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4798 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6686 ; 4.551 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 88 ;31.560 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6702 ;19.793 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 485 REMARK 3 RESIDUE RANGE : A 502 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1100 -11.1980 14.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0508 REMARK 3 T33: 0.0720 T12: 0.0014 REMARK 3 T13: -0.0121 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.1209 L22: 0.0449 REMARK 3 L33: 0.0817 L12: -0.0014 REMARK 3 L13: 0.0007 L23: 0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0507 S13: -0.0181 REMARK 3 S21: 0.0247 S22: 0.0007 S23: -0.0138 REMARK 3 S31: 0.0236 S32: 0.0098 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 484 REMARK 3 RESIDUE RANGE : B 502 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3210 22.1260 38.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0059 REMARK 3 T33: 0.0902 T12: -0.0040 REMARK 3 T13: 0.0006 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4144 L22: 0.1302 REMARK 3 L33: 0.2413 L12: -0.2210 REMARK 3 L13: -0.1607 L23: 0.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0146 S13: 0.1052 REMARK 3 S21: -0.0090 S22: 0.0102 S23: -0.0532 REMARK 3 S31: -0.0134 S32: 0.0035 S33: -0.0325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4KP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT. SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AU8; ISPC PLASMODIUM APO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG4000, 100 MM NAAC, 15% MPD, PH REMARK 280 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.06000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 62 REMARK 465 ARG A 63 REMARK 465 GLY A 64 REMARK 465 SER A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 GLY A 72 REMARK 465 SER A 73 REMARK 465 ILE A 74 REMARK 465 LYS A 75 REMARK 465 LYS A 76 REMARK 465 ASN A 486 REMARK 465 SER A 487 REMARK 465 SER A 488 REMARK 465 MET B 62 REMARK 465 ARG B 63 REMARK 465 GLY B 64 REMARK 465 SER B 65 REMARK 465 HIS B 66 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 GLY B 72 REMARK 465 SER B 73 REMARK 465 ILE B 74 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 LYS B 292 REMARK 465 HIS B 293 REMARK 465 PRO B 294 REMARK 465 LYS B 295 REMARK 465 TRP B 296 REMARK 465 LYS B 297 REMARK 465 HIS B 485 REMARK 465 ASN B 486 REMARK 465 SER B 487 REMARK 465 SER B 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 130 OH TYR B 154 2.08 REMARK 500 O LYS B 145 CE LYS B 149 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 115 -72.95 -89.58 REMARK 500 SER A 183 -167.95 69.07 REMARK 500 ASN A 204 99.56 -61.23 REMARK 500 THR A 249 -154.49 -139.86 REMARK 500 LYS A 297 101.94 -54.27 REMARK 500 SER A 342 165.56 174.75 REMARK 500 LYS A 349 -0.89 85.05 REMARK 500 SER A 387 -51.58 76.30 REMARK 500 ASN A 413 -132.40 52.02 REMARK 500 ASN B 115 -76.02 -85.29 REMARK 500 SER B 183 -168.98 68.23 REMARK 500 ASN B 204 97.01 -66.33 REMARK 500 THR B 249 -154.21 -141.93 REMARK 500 SER B 342 163.76 173.01 REMARK 500 LYS B 349 1.94 84.82 REMARK 500 SER B 387 -49.54 76.52 REMARK 500 ASN B 413 -133.72 48.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 GLU A 233 OE1 99.1 REMARK 620 3 GLU A 315 OE2 101.2 91.3 REMARK 620 4 1UQ A 503 O4 88.2 93.3 168.8 REMARK 620 5 1UQ A 503 O1 114.5 145.4 90.0 80.4 REMARK 620 6 1UQ A 503 N3 103.4 112.9 141.8 27.6 53.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD1 REMARK 620 2 GLU B 233 OE1 93.5 REMARK 620 3 GLU B 315 OE2 105.9 93.7 REMARK 620 4 1UQ B 502 O4 82.6 92.9 168.8 REMARK 620 5 1UQ B 502 O1 124.6 138.8 90.3 78.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1UQ A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN3 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1UQ B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AU8 RELATED DB: PDB REMARK 900 APO ISPC REMARK 900 RELATED ID: 3AU9 RELATED DB: PDB REMARK 900 ISPC:FOM-COMPLEX DBREF 4KP7 A 74 488 UNP O96693 DXR_PLAFX 74 488 DBREF 4KP7 B 74 488 UNP O96693 DXR_PLAFX 74 488 SEQADV 4KP7 MET A 62 UNP O96693 EXPRESSION TAG SEQADV 4KP7 ARG A 63 UNP O96693 EXPRESSION TAG SEQADV 4KP7 GLY A 64 UNP O96693 EXPRESSION TAG SEQADV 4KP7 SER A 65 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 66 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 67 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 68 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 69 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 70 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS A 71 UNP O96693 EXPRESSION TAG SEQADV 4KP7 GLY A 72 UNP O96693 EXPRESSION TAG SEQADV 4KP7 SER A 73 UNP O96693 EXPRESSION TAG SEQADV 4KP7 MET B 62 UNP O96693 EXPRESSION TAG SEQADV 4KP7 ARG B 63 UNP O96693 EXPRESSION TAG SEQADV 4KP7 GLY B 64 UNP O96693 EXPRESSION TAG SEQADV 4KP7 SER B 65 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 66 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 67 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 68 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 69 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 70 UNP O96693 EXPRESSION TAG SEQADV 4KP7 HIS B 71 UNP O96693 EXPRESSION TAG SEQADV 4KP7 GLY B 72 UNP O96693 EXPRESSION TAG SEQADV 4KP7 SER B 73 UNP O96693 EXPRESSION TAG SEQRES 1 A 427 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ILE SEQRES 2 A 427 LYS LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SEQRES 3 A 427 SER ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS SEQRES 4 A 427 ASN LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR SEQRES 5 A 427 VAL ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG SEQRES 6 A 427 GLU PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER SEQRES 7 A 427 VAL TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS SEQRES 8 A 427 ASP TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET SEQRES 9 A 427 LYS GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL SEQRES 10 A 427 ILE GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET SEQRES 11 A 427 TYR ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN SEQRES 12 A 427 LYS GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS SEQRES 13 A 427 LEU LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL SEQRES 14 A 427 ASP SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN SEQRES 15 A 427 ASN LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SEQRES 16 A 427 SER LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SEQRES 17 A 427 SER GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU SEQRES 18 A 427 LYS ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS SEQRES 19 A 427 TRP LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR SEQRES 20 A 427 MET MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE SEQRES 21 A 427 LEU PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL SEQRES 22 A 427 HIS LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE SEQRES 23 A 427 ASP LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET SEQRES 24 A 427 GLN ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG SEQRES 25 A 427 ILE LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SEQRES 26 A 427 SER THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE SEQRES 27 A 427 PRO CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY SEQRES 28 A 427 ASN PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE SEQRES 29 A 427 ALA ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE SEQRES 30 A 427 ASP ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE SEQRES 31 A 427 ASN SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET SEQRES 32 A 427 LYS GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS SEQRES 33 A 427 ALA THR ASP ILE TYR ASN LYS HIS ASN SER SER SEQRES 1 B 427 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ILE SEQRES 2 B 427 LYS LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SEQRES 3 B 427 SER ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS SEQRES 4 B 427 ASN LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR SEQRES 5 B 427 VAL ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG SEQRES 6 B 427 GLU PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER SEQRES 7 B 427 VAL TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS SEQRES 8 B 427 ASP TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET SEQRES 9 B 427 LYS GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL SEQRES 10 B 427 ILE GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET SEQRES 11 B 427 TYR ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN SEQRES 12 B 427 LYS GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS SEQRES 13 B 427 LEU LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL SEQRES 14 B 427 ASP SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN SEQRES 15 B 427 ASN LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SEQRES 16 B 427 SER LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SEQRES 17 B 427 SER GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU SEQRES 18 B 427 LYS ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS SEQRES 19 B 427 TRP LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR SEQRES 20 B 427 MET MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE SEQRES 21 B 427 LEU PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL SEQRES 22 B 427 HIS LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE SEQRES 23 B 427 ASP LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET SEQRES 24 B 427 GLN ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG SEQRES 25 B 427 ILE LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SEQRES 26 B 427 SER THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE SEQRES 27 B 427 PRO CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY SEQRES 28 B 427 ASN PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE SEQRES 29 B 427 ALA ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE SEQRES 30 B 427 ASP ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE SEQRES 31 B 427 ASN SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET SEQRES 32 B 427 LYS GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS SEQRES 33 B 427 ALA THR ASP ILE TYR ASN LYS HIS ASN SER SER HET MN3 A 501 1 HET NAP A 502 48 HET 1UQ A 503 18 HET MN3 B 501 1 HET 1UQ B 502 18 HETNAM MN3 MANGANESE (III) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM 1UQ [(S)-({2-[HYDROXY(METHYL)AMINO]-2-OXOETHYL}SULFANYL) HETNAM 2 1UQ (PHENYL)METHYL]PHOSPHONIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 MN3 2(MN 3+) FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 1UQ 2(C10 H14 N O5 P S) FORMUL 8 HOH *236(H2 O) HELIX 1 1 GLY A 87 GLU A 104 1 18 HELIX 2 2 SER A 117 LEU A 129 1 13 HELIX 3 3 ASP A 137 SER A 139 5 3 HELIX 4 4 VAL A 140 VAL A 148 1 9 HELIX 5 5 LYS A 149 ILE A 151 5 3 HELIX 6 6 GLY A 161 SER A 171 1 11 HELIX 7 7 SER A 183 GLN A 185 5 3 HELIX 8 8 GLY A 186 ASN A 196 1 11 HELIX 9 9 ASN A 204 HIS A 222 1 19 HELIX 10 10 ASP A 231 CYS A 240 1 10 HELIX 11 11 ASP A 242 LEU A 247 1 6 HELIX 12 12 ASN A 255 ASN A 260 1 6 HELIX 13 13 THR A 278 LYS A 283 1 6 HELIX 14 14 THR A 286 LYS A 292 1 7 HELIX 15 15 GLY A 299 THR A 308 1 10 HELIX 16 16 MET A 309 ASP A 324 1 16 HELIX 17 17 ASP A 326 ASN A 328 5 3 HELIX 18 18 MET A 360 TRP A 370 1 11 HELIX 19 19 ASP A 382 SER A 387 1 6 HELIX 20 20 PHE A 399 GLY A 412 1 14 HELIX 21 21 PHE A 414 ASN A 432 1 19 HELIX 22 22 LYS A 436 PHE A 451 1 16 HELIX 23 23 ASN A 459 LYS A 484 1 26 HELIX 24 24 GLY B 87 GLU B 104 1 18 HELIX 25 25 SER B 117 LEU B 129 1 13 HELIX 26 26 ASP B 137 SER B 139 5 3 HELIX 27 27 VAL B 140 LYS B 149 1 10 HELIX 28 28 GLY B 161 SER B 171 1 11 HELIX 29 29 SER B 183 GLN B 185 5 3 HELIX 30 30 GLY B 186 ASN B 196 1 11 HELIX 31 31 ASN B 204 HIS B 222 1 19 HELIX 32 32 ASP B 231 CYS B 240 1 10 HELIX 33 33 ASP B 242 LEU B 247 1 6 HELIX 34 34 ASN B 255 ASN B 260 1 6 HELIX 35 35 THR B 278 LYS B 283 1 6 HELIX 36 36 THR B 286 LEU B 291 1 6 HELIX 37 37 GLY B 299 THR B 308 1 10 HELIX 38 38 MET B 309 ASP B 324 1 16 HELIX 39 39 ASP B 326 ASN B 328 5 3 HELIX 40 40 MET B 360 TRP B 370 1 11 HELIX 41 41 ASP B 382 SER B 387 1 6 HELIX 42 42 PHE B 399 GLY B 412 1 14 HELIX 43 43 PHE B 414 ASN B 432 1 19 HELIX 44 44 LYS B 436 PHE B 451 1 16 HELIX 45 45 ASN B 459 LYS B 484 1 26 SHEET 1 A 7 ILE A 157 CYS A 160 0 SHEET 2 A 7 TYR A 132 ILE A 135 1 N LEU A 133 O LEU A 159 SHEET 3 A 7 PHE A 107 VAL A 114 1 N LEU A 112 O CYS A 134 SHEET 4 A 7 ILE A 78 PHE A 83 1 N VAL A 80 O LYS A 110 SHEET 5 A 7 LYS A 176 ILE A 179 1 O VAL A 178 N PHE A 83 SHEET 6 A 7 ILE A 199 LEU A 202 1 O ILE A 199 N ILE A 177 SHEET 7 A 7 LYS A 226 PRO A 229 1 O LYS A 226 N VAL A 200 SHEET 1 B 8 ILE A 330 VAL A 334 0 SHEET 2 B 8 ILE A 262 SER A 269 1 N LEU A 267 O GLU A 331 SHEET 3 B 8 ILE A 340 PHE A 346 -1 O GLU A 345 N ASN A 263 SHEET 4 B 8 VAL A 351 MET A 355 -1 O ILE A 352 N VAL A 344 SHEET 5 B 8 VAL B 351 MET B 355 -1 O VAL B 351 N MET A 355 SHEET 6 B 8 ILE B 340 PHE B 346 -1 N VAL B 344 O ILE B 352 SHEET 7 B 8 ILE B 262 SER B 269 -1 N ASN B 263 O GLU B 345 SHEET 8 B 8 ILE B 330 VAL B 334 1 O GLU B 331 N LEU B 267 SHEET 1 C 2 THR A 388 THR A 390 0 SHEET 2 C 2 THR B 388 THR B 390 -1 O LEU B 389 N LEU A 389 SHEET 1 D 7 ILE B 157 CYS B 160 0 SHEET 2 D 7 TYR B 132 ILE B 135 1 N LEU B 133 O LEU B 159 SHEET 3 D 7 PHE B 107 VAL B 114 1 N LEU B 112 O CYS B 134 SHEET 4 D 7 ILE B 78 PHE B 83 1 N VAL B 80 O LYS B 110 SHEET 5 D 7 LYS B 176 ILE B 179 1 O VAL B 178 N PHE B 83 SHEET 6 D 7 ILE B 199 LEU B 202 1 O ILE B 199 N ILE B 177 SHEET 7 D 7 LYS B 226 PRO B 229 1 O LYS B 226 N VAL B 200 LINK OD1 ASP A 231 MN MN3 A 501 1555 1555 1.93 LINK OE1 GLU A 233 MN MN3 A 501 1555 1555 1.94 LINK OE2 GLU A 315 MN MN3 A 501 1555 1555 1.95 LINK MN MN3 A 501 O4 1UQ A 503 1555 1555 2.04 LINK MN MN3 A 501 O1 1UQ A 503 1555 1555 2.10 LINK MN MN3 A 501 N3 1UQ A 503 1555 1555 2.79 LINK OD1 ASP B 231 MN MN3 B 501 1555 1555 1.96 LINK OE1 GLU B 233 MN MN3 B 501 1555 1555 1.95 LINK OE2 GLU B 315 MN MN3 B 501 1555 1555 1.94 LINK MN MN3 B 501 O4 1UQ B 502 1555 1555 2.06 LINK MN MN3 B 501 O1 1UQ B 502 1555 1555 2.13 CISPEP 1 TRP A 370 PRO A 371 0 5.64 CISPEP 2 TRP B 370 PRO B 371 0 4.77 SITE 1 AC1 5 LYS A 205 ASP A 231 GLU A 233 GLU A 315 SITE 2 AC1 5 1UQ A 503 SITE 1 AC2 25 GLY A 84 THR A 86 GLY A 87 SER A 88 SITE 2 AC2 25 ILE A 89 TYR A 113 VAL A 114 ASN A 115 SITE 3 AC2 25 LYS A 116 SER A 117 HIS A 136 GLY A 180 SITE 4 AC2 25 ILE A 181 ASP A 182 GLN A 185 ALA A 203 SITE 5 AC2 25 ASN A 204 GLU A 206 ASP A 231 TRP A 296 SITE 6 AC2 25 GLY A 299 ILE A 302 MET A 360 HOH A 613 SITE 7 AC2 25 HOH A 631 SITE 1 AC3 15 LYS A 205 ASP A 231 SER A 232 GLU A 233 SITE 2 AC3 15 SER A 269 SER A 270 TRP A 296 MET A 298 SITE 3 AC3 15 SER A 306 ASN A 311 LYS A 312 GLU A 315 SITE 4 AC3 15 MN3 A 501 HOH A 619 HOH A 627 SITE 1 AC4 5 LYS B 205 ASP B 231 GLU B 233 GLU B 315 SITE 2 AC4 5 1UQ B 502 SITE 1 AC5 14 LYS B 205 ASP B 231 SER B 232 GLU B 233 SITE 2 AC5 14 SER B 269 SER B 270 MET B 298 SER B 306 SITE 3 AC5 14 ASN B 311 LYS B 312 GLU B 315 MN3 B 501 SITE 4 AC5 14 HOH B 638 HOH B 654 CRYST1 51.460 78.120 99.990 90.00 91.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019433 0.000000 0.000519 0.00000 SCALE2 0.000000 0.012801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010005 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.735367 0.627642 0.255542 -7.24105 1 MTRIX2 2 0.629531 -0.772285 0.085239 0.64235 1 MTRIX3 2 0.250850 0.098190 -0.963033 48.08458 1