HEADER OXIDOREDUCTASE 13-MAY-13 4KPB TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 BM-3 R47E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 BM-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-471; COMPND 5 SYNONYM: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE, CYTOCHROME P450(BM- COMPND 6 3), CYTOCHROME P450 102; COMPND 7 EC: 1.14.14.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A1, CYP102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME-DEPENDENT STEREOSPECIFIC OXIDATION OF SUBSTRATES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SADRE-BAZZAZ,J.CATALANO,A.E.MCDERMOTT,L.TONG REVDAT 3 28-FEB-24 4KPB 1 REMARK SEQADV REVDAT 2 16-OCT-13 4KPB 1 JRNL REVDAT 1 24-JUL-13 4KPB 0 JRNL AUTH J.CATALANO,K.SADRE-BAZZAZ,G.A.AMODEO,L.TONG,A.MCDERMOTT JRNL TITL STRUCTURAL EVIDENCE: A SINGLE CHARGED RESIDUE AFFECTS JRNL TITL 2 SUBSTRATE BINDING IN CYTOCHROME P450 BM-3. JRNL REF BIOCHEMISTRY V. 52 6807 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23829560 JRNL DOI 10.1021/BI4000645 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 63247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3983 - 5.9563 0.94 2517 131 0.1992 0.2570 REMARK 3 2 5.9563 - 4.7341 0.98 2599 140 0.1821 0.2559 REMARK 3 3 4.7341 - 4.1375 0.99 2594 154 0.1536 0.1756 REMARK 3 4 4.1375 - 3.7601 0.99 2633 126 0.1650 0.1906 REMARK 3 5 3.7601 - 3.4910 0.99 2598 139 0.1868 0.2019 REMARK 3 6 3.4910 - 3.2855 1.00 2604 147 0.1875 0.2179 REMARK 3 7 3.2855 - 3.1211 1.00 2626 132 0.1919 0.2382 REMARK 3 8 3.1211 - 2.9854 1.00 2646 136 0.1877 0.2267 REMARK 3 9 2.9854 - 2.8706 1.00 2651 127 0.1947 0.2336 REMARK 3 10 2.8706 - 2.7716 1.00 2594 139 0.1945 0.2575 REMARK 3 11 2.7716 - 2.6850 1.00 2608 139 0.1933 0.2473 REMARK 3 12 2.6850 - 2.6083 1.00 2641 149 0.1924 0.2539 REMARK 3 13 2.6083 - 2.5397 1.00 2609 138 0.1933 0.2547 REMARK 3 14 2.5397 - 2.4777 1.00 2607 138 0.1988 0.2476 REMARK 3 15 2.4777 - 2.4214 1.00 2632 148 0.1854 0.2755 REMARK 3 16 2.4214 - 2.3699 1.00 2592 141 0.1866 0.2641 REMARK 3 17 2.3699 - 2.3225 1.00 2617 153 0.1794 0.2315 REMARK 3 18 2.3225 - 2.2787 1.00 2591 145 0.1913 0.2450 REMARK 3 19 2.2787 - 2.2380 1.00 2626 153 0.1905 0.2286 REMARK 3 20 2.2380 - 2.2001 1.00 2619 135 0.1971 0.2629 REMARK 3 21 2.2001 - 2.1646 1.00 2602 117 0.1961 0.2752 REMARK 3 22 2.1646 - 2.1313 1.00 2644 150 0.2128 0.2639 REMARK 3 23 2.1313 - 2.1000 0.99 2591 129 0.2162 0.3082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 40.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86230 REMARK 3 B22 (A**2) : -1.87520 REMARK 3 B33 (A**2) : 3.73760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.88430 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7393 REMARK 3 ANGLE : 1.153 10019 REMARK 3 CHIRALITY : 0.080 1072 REMARK 3 PLANARITY : 0.004 1297 REMARK 3 DIHEDRAL : 15.767 2775 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.20500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM MAGNESIUM CHLORIDE, 100 MM MES, REMARK 280 PH 6.0, 14% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.35800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 189 REMARK 465 ARG A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 ASP A 195 REMARK 465 PRO A 196 REMARK 465 ALA A 197 REMARK 465 TYR A 198 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 GLU A 228 REMARK 465 GLN A 229 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 MET B -23 REMARK 465 GLY B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 ASP B -15 REMARK 465 TYR B -14 REMARK 465 ASP B -13 REMARK 465 ILE B -12 REMARK 465 PRO B -11 REMARK 465 THR B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 189 REMARK 465 ARG B 190 REMARK 465 ALA B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 PRO B 196 REMARK 465 ALA B 197 REMARK 465 GLY B 227 REMARK 465 GLU B 228 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 THR B 463 REMARK 465 GLU B 464 REMARK 465 GLN B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 LYS B 468 REMARK 465 LYS B 469 REMARK 465 VAL B 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 224 O HOH A 820 1.47 REMARK 500 O HOH A 910 O HOH A 952 1.87 REMARK 500 O HOH A 835 O HOH A 842 1.88 REMARK 500 O HOH A 650 O HOH A 811 1.88 REMARK 500 O HOH B 758 O HOH B 844 1.90 REMARK 500 O HOH B 771 O HOH B 991 1.97 REMARK 500 O HOH A 840 O HOH A 957 1.99 REMARK 500 O HOH A 943 O HOH A 949 2.03 REMARK 500 O HOH A 635 O HOH A 839 2.03 REMARK 500 OE1 GLU A 207 O HOH A 714 2.03 REMARK 500 O HOH B 867 O HOH B 959 2.06 REMARK 500 O SER A 230 OD2 ASP A 232 2.06 REMARK 500 O HOH B 914 O HOH B 937 2.06 REMARK 500 O HOH A 817 O HOH B 711 2.09 REMARK 500 O HOH B 978 O HOH B 984 2.09 REMARK 500 OD1 ASP B 222 O HOH B 982 2.10 REMARK 500 SD MET A 112 O HOH A 830 2.14 REMARK 500 CB ASP A 231 O HOH A 867 2.14 REMARK 500 O HOH A 914 O HOH A 923 2.15 REMARK 500 NH1 ARG A 223 O HOH A 607 2.15 REMARK 500 O HOH A 749 O HOH A 938 2.16 REMARK 500 O HOH B 976 O HOH B 1004 2.16 REMARK 500 OE1 GLN B 110 O HOH B 963 2.17 REMARK 500 O HOH B 890 O HOH B 1002 2.18 REMARK 500 O HOH A 901 O HOH A 948 2.18 REMARK 500 OD2 ASP B 168 O HOH B 916 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLN A 169 O HOH B 916 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -133.01 57.71 REMARK 500 ASP A 84 39.72 -95.04 REMARK 500 PHE A 158 30.19 -140.42 REMARK 500 ASP A 231 2.72 -59.63 REMARK 500 ASP A 232 -168.16 -38.68 REMARK 500 GLU A 344 -8.28 -144.61 REMARK 500 ASP A 370 34.21 -79.83 REMARK 500 THR A 436 -126.42 -135.39 REMARK 500 LYS B 15 -128.89 54.81 REMARK 500 LEU B 20 51.65 -119.53 REMARK 500 ASP B 84 43.29 -99.18 REMARK 500 PHE B 158 34.12 -146.58 REMARK 500 ASP B 231 2.41 -59.66 REMARK 500 ASP B 232 175.21 -41.05 REMARK 500 ALA B 328 79.03 -113.49 REMARK 500 GLU B 344 -20.41 -146.53 REMARK 500 LYS B 349 128.20 -38.41 REMARK 500 ASP B 370 54.99 -91.09 REMARK 500 THR B 436 52.06 -148.18 REMARK 500 LEU B 437 -39.57 88.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 101.7 REMARK 620 3 HEM A 501 NB 92.0 88.9 REMARK 620 4 HEM A 501 NC 90.7 167.5 90.1 REMARK 620 5 HEM A 501 ND 101.0 87.3 167.0 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 101.3 REMARK 620 3 HEM B 501 NB 90.7 89.6 REMARK 620 4 HEM B 501 NC 92.2 166.4 89.0 REMARK 620 5 HEM B 501 ND 102.5 87.2 166.8 91.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KPA RELATED DB: PDB DBREF 4KPB A 0 470 UNP P14779 CPXB_BACME 1 471 DBREF 4KPB B 0 470 UNP P14779 CPXB_BACME 1 471 SEQADV 4KPB MET A -23 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLY A -22 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -21 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -20 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -19 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -18 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -17 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS A -16 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASP A -15 UNP P14779 EXPRESSION TAG SEQADV 4KPB TYR A -14 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASP A -13 UNP P14779 EXPRESSION TAG SEQADV 4KPB ILE A -12 UNP P14779 EXPRESSION TAG SEQADV 4KPB PRO A -11 UNP P14779 EXPRESSION TAG SEQADV 4KPB THR A -10 UNP P14779 EXPRESSION TAG SEQADV 4KPB THR A -9 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLU A -8 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASN A -7 UNP P14779 EXPRESSION TAG SEQADV 4KPB LEU A -6 UNP P14779 EXPRESSION TAG SEQADV 4KPB TYR A -5 UNP P14779 EXPRESSION TAG SEQADV 4KPB PHE A -4 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLN A -3 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLY A -2 UNP P14779 EXPRESSION TAG SEQADV 4KPB ALA A -1 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLU A 47 UNP P14779 ARG 48 ENGINEERED MUTATION SEQADV 4KPB MET B -23 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLY B -22 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -21 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -20 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -19 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -18 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -17 UNP P14779 EXPRESSION TAG SEQADV 4KPB HIS B -16 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASP B -15 UNP P14779 EXPRESSION TAG SEQADV 4KPB TYR B -14 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASP B -13 UNP P14779 EXPRESSION TAG SEQADV 4KPB ILE B -12 UNP P14779 EXPRESSION TAG SEQADV 4KPB PRO B -11 UNP P14779 EXPRESSION TAG SEQADV 4KPB THR B -10 UNP P14779 EXPRESSION TAG SEQADV 4KPB THR B -9 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLU B -8 UNP P14779 EXPRESSION TAG SEQADV 4KPB ASN B -7 UNP P14779 EXPRESSION TAG SEQADV 4KPB LEU B -6 UNP P14779 EXPRESSION TAG SEQADV 4KPB TYR B -5 UNP P14779 EXPRESSION TAG SEQADV 4KPB PHE B -4 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLN B -3 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLY B -2 UNP P14779 EXPRESSION TAG SEQADV 4KPB ALA B -1 UNP P14779 EXPRESSION TAG SEQADV 4KPB GLU B 47 UNP P14779 ARG 48 ENGINEERED MUTATION SEQRES 1 A 494 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 494 THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET THR ILE SEQRES 3 A 494 LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU LEU LYS SEQRES 4 A 494 ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL GLN ALA SEQRES 5 A 494 LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE PHE LYS SEQRES 6 A 494 PHE GLU ALA PRO GLY GLU VAL THR ARG TYR LEU SER SER SEQRES 7 A 494 GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER ARG PHE SEQRES 8 A 494 ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL ARG ASP SEQRES 9 A 494 PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR HIS GLU SEQRES 10 A 494 LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU PRO SER SEQRES 11 A 494 PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA MET MET SEQRES 12 A 494 VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP GLU ARG SEQRES 13 A 494 LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU ASP MET SEQRES 14 A 494 THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS GLY PHE SEQRES 15 A 494 ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN PRO HIS SEQRES 16 A 494 PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP GLU ALA SEQRES 17 A 494 MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP PRO ALA SEQRES 18 A 494 TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP ILE LYS SEQRES 19 A 494 VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA ASP ARG SEQRES 20 A 494 LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU THR HIS SEQRES 21 A 494 MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU PRO LEU SEQRES 22 A 494 ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR PHE LEU SEQRES 23 A 494 ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SER PHE SEQRES 24 A 494 ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL LEU GLN SEQRES 25 A 494 LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL ASP PRO SEQRES 26 A 494 VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS TYR VAL SEQRES 27 A 494 GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP PRO THR SEQRES 28 A 494 ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP THR VAL SEQRES 29 A 494 LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP GLU LEU SEQRES 30 A 494 MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS THR ILE SEQRES 31 A 494 TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU ARG PHE SEQRES 32 A 494 GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE LYS PRO SEQRES 33 A 494 PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN GLN PHE SEQRES 34 A 494 ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET MET LEU SEQRES 35 A 494 LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR GLU LEU SEQRES 36 A 494 ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU GLY PHE SEQRES 37 A 494 VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU GLY GLY SEQRES 38 A 494 ILE PRO SER PRO SER THR GLU GLN SER ALA LYS LYS VAL SEQRES 1 B 494 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 B 494 THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET THR ILE SEQRES 3 B 494 LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU LEU LYS SEQRES 4 B 494 ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL GLN ALA SEQRES 5 B 494 LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE PHE LYS SEQRES 6 B 494 PHE GLU ALA PRO GLY GLU VAL THR ARG TYR LEU SER SER SEQRES 7 B 494 GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER ARG PHE SEQRES 8 B 494 ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL ARG ASP SEQRES 9 B 494 PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR HIS GLU SEQRES 10 B 494 LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU PRO SER SEQRES 11 B 494 PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA MET MET SEQRES 12 B 494 VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP GLU ARG SEQRES 13 B 494 LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU ASP MET SEQRES 14 B 494 THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS GLY PHE SEQRES 15 B 494 ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN PRO HIS SEQRES 16 B 494 PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP GLU ALA SEQRES 17 B 494 MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP PRO ALA SEQRES 18 B 494 TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP ILE LYS SEQRES 19 B 494 VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA ASP ARG SEQRES 20 B 494 LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU THR HIS SEQRES 21 B 494 MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU PRO LEU SEQRES 22 B 494 ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR PHE LEU SEQRES 23 B 494 ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SER PHE SEQRES 24 B 494 ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL LEU GLN SEQRES 25 B 494 LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL ASP PRO SEQRES 26 B 494 VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS TYR VAL SEQRES 27 B 494 GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP PRO THR SEQRES 28 B 494 ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP THR VAL SEQRES 29 B 494 LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP GLU LEU SEQRES 30 B 494 MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS THR ILE SEQRES 31 B 494 TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU ARG PHE SEQRES 32 B 494 GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE LYS PRO SEQRES 33 B 494 PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN GLN PHE SEQRES 34 B 494 ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET MET LEU SEQRES 35 B 494 LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR GLU LEU SEQRES 36 B 494 ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU GLY PHE SEQRES 37 B 494 VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU GLY GLY SEQRES 38 B 494 ILE PRO SER PRO SER THR GLU GLN SER ALA LYS LYS VAL HET HEM A 501 43 HET HEM B 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *772(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLY A 85 SER A 89 5 5 HELIX 7 7 GLU A 93 LEU A 104 1 12 HELIX 8 8 PRO A 105 PHE A 107 5 3 HELIX 9 9 SER A 108 ARG A 132 1 25 HELIX 10 10 VAL A 141 ASN A 159 1 19 HELIX 11 11 ASN A 163 ARG A 167 5 5 HELIX 12 12 HIS A 171 LYS A 187 1 17 HELIX 13 13 GLU A 200 ALA A 225 1 26 HELIX 14 14 ASP A 232 GLY A 240 1 9 HELIX 15 15 ASP A 250 ASN A 283 1 34 HELIX 16 16 ASN A 283 LEU A 298 1 16 HELIX 17 17 SER A 304 GLN A 310 1 7 HELIX 18 18 LEU A 311 TRP A 325 1 15 HELIX 19 19 ILE A 357 HIS A 361 1 5 HELIX 20 20 ASP A 363 GLY A 368 1 6 HELIX 21 21 ARG A 375 GLU A 380 5 6 HELIX 22 22 ASN A 381 ILE A 385 5 5 HELIX 23 23 ASN A 395 ALA A 399 5 5 HELIX 24 24 GLY A 402 HIS A 420 1 19 HELIX 25 25 PHE B 11 LYS B 15 5 5 HELIX 26 26 ASN B 16 ASN B 21 5 6 HELIX 27 27 LYS B 24 GLY B 37 1 14 HELIX 28 28 SER B 54 CYS B 62 1 9 HELIX 29 29 SER B 72 GLY B 83 1 12 HELIX 30 30 GLY B 85 SER B 89 5 5 HELIX 31 31 GLU B 93 LEU B 104 1 12 HELIX 32 32 PRO B 105 SER B 108 5 4 HELIX 33 33 GLN B 109 GLN B 110 5 2 HELIX 34 34 ALA B 111 ARG B 132 1 22 HELIX 35 35 VAL B 141 ASN B 159 1 19 HELIX 36 36 ASN B 163 ARG B 167 5 5 HELIX 37 37 HIS B 171 LYS B 187 1 17 HELIX 38 38 GLU B 200 ALA B 225 1 26 HELIX 39 39 ASP B 232 GLY B 240 1 9 HELIX 40 40 ASP B 250 ASN B 283 1 34 HELIX 41 41 ASN B 283 LEU B 298 1 16 HELIX 42 42 SER B 304 GLN B 310 1 7 HELIX 43 43 LEU B 311 TRP B 325 1 15 HELIX 44 44 GLY B 342 GLU B 344 5 3 HELIX 45 45 ILE B 357 HIS B 361 1 5 HELIX 46 46 ASP B 363 GLY B 368 1 6 HELIX 47 47 ARG B 375 GLU B 380 5 6 HELIX 48 48 ASN B 381 ILE B 385 5 5 HELIX 49 49 ASN B 395 ALA B 399 5 5 HELIX 50 50 GLY B 402 HIS B 420 1 19 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 GLU A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 A 5 GLU A 352 LEU A 356 1 O MET A 354 N ARG A 50 SHEET 4 A 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 A 5 PHE A 67 LYS A 69 -1 N ASP A 68 O TYR A 334 SHEET 1 B 3 ILE A 139 GLU A 140 0 SHEET 2 B 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 B 3 PHE A 421 GLU A 424 -1 N GLU A 424 O LYS A 447 SHEET 1 C 2 THR A 339 LEU A 341 0 SHEET 2 C 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 E 5 ILE B 39 ALA B 44 0 SHEET 2 E 5 GLU B 47 LEU B 52 -1 O GLU B 47 N ALA B 44 SHEET 3 E 5 GLU B 352 LEU B 356 1 O MET B 354 N ARG B 50 SHEET 4 E 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 E 5 PHE B 67 LYS B 69 -1 N ASP B 68 O TYR B 334 SHEET 1 F 3 ILE B 139 GLU B 140 0 SHEET 2 F 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 F 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 H 2 ILE B 433 GLU B 435 0 SHEET 2 H 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.32 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.34 SITE 1 AC1 25 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 25 ALA A 264 GLY A 265 THR A 268 THR A 269 SITE 3 AC1 25 THR A 327 PHE A 331 PRO A 392 PHE A 393 SITE 4 AC1 25 GLY A 394 ARG A 398 ALA A 399 CYS A 400 SITE 5 AC1 25 ILE A 401 GLY A 402 ALA A 406 HOH A 602 SITE 6 AC1 25 HOH A 604 HOH A 606 HOH A 612 HOH A 628 SITE 7 AC1 25 HOH A 941 SITE 1 AC2 25 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC2 25 ALA B 264 GLY B 265 THR B 268 THR B 269 SITE 3 AC2 25 THR B 327 PHE B 331 PRO B 392 PHE B 393 SITE 4 AC2 25 GLY B 394 ARG B 398 ALA B 399 CYS B 400 SITE 5 AC2 25 ILE B 401 GLY B 402 ALA B 406 HOH B 604 SITE 6 AC2 25 HOH B 611 HOH B 617 HOH B 640 HOH B 644 SITE 7 AC2 25 HOH B 734 CRYST1 58.963 152.716 62.003 90.00 94.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016960 0.000000 0.001299 0.00000 SCALE2 0.000000 0.006548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016175 0.00000