HEADER TRANSFERASE 14-MAY-13 4KPZ TITLE HIN GLMU BOUND TO A SMALL MOLECULE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- COMPND 5 ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- COMPND 6 PHOSPHATE N-ACETYLTRANSFERASE; COMPND 7 EC: 2.7.7.23, 2.3.1.157; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: GLMU, HI_0642; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA HELIX, CELL WALL BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DOIG,S.L.KAZMIRSKI,P.A.BORIACK-SJODIN REVDAT 3 28-FEB-24 4KPZ 1 REMARK LINK REVDAT 2 17-DEC-14 4KPZ 1 JRNL REVDAT 1 15-OCT-14 4KPZ 0 JRNL AUTH P.DOIG,P.A.BORIACK-SJODIN,J.DUMAS,J.HU,K.ITOH,K.JOHNSON, JRNL AUTH 2 S.KAZMIRSKI,T.KINOSHITA,S.KURODA,T.O.SATO,K.SUGIMOTO, JRNL AUTH 3 K.TOHYAMA,H.AOI,K.WAKAMATSU,H.WANG JRNL TITL RATIONAL DESIGN OF INHIBITORS OF THE BACTERIAL CELL WALL JRNL TITL 2 SYNTHETIC ENZYME GLMU USING VIRTUAL SCREENING AND JRNL TITL 3 LEAD-HOPPING. JRNL REF BIOORG.MED.CHEM. V. 22 6256 2014 JRNL REFN ISSN 0968-0896 JRNL PMID 25262942 JRNL DOI 10.1016/J.BMC.2014.08.017 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 41865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2203 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : -2.71000 REMARK 3 B12 (A**2) : 0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3544 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2300 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4805 ; 0.946 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5671 ; 0.753 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 5.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;35.720 ;25.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;11.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 630 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2226 ; 0.344 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 934 ; 0.043 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3585 ; 0.671 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 0.945 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 1.680 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 70.3650 41.9660 18.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.0069 T22: 0.0114 REMARK 3 T33: 0.0295 T12: -0.0020 REMARK 3 T13: -0.0103 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.2227 L22: 0.0336 REMARK 3 L33: 0.3020 L12: 0.0014 REMARK 3 L13: 0.1807 L23: -0.0263 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.0285 S13: 0.0037 REMARK 3 S21: 0.0043 S22: -0.0010 S23: -0.0204 REMARK 3 S31: -0.0090 S32: 0.0047 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 2% PEG400, 0.1 REMARK 280 MES, PH 5.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.37550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.39371 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 109.16267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.37550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.39371 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 109.16267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.37550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.39371 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.16267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.37550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.39371 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.16267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.37550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.39371 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.16267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.37550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.39371 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.16267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.78742 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 218.32533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.78742 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 218.32533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.78742 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 218.32533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.78742 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 218.32533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.78742 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 218.32533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.78742 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 218.32533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -264.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 108.75100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 54.37550 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 94.18113 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 508 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1068 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1070 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1071 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 454 REMARK 465 LYS A 455 REMARK 465 LYS A 456 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 26.92 -146.26 REMARK 500 ASN A 124 13.77 59.40 REMARK 500 LYS A 352 58.80 38.85 REMARK 500 LYS A 392 71.61 51.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 406 OD1 REMARK 620 2 HOH A1009 O 85.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 509 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 406 OD2 REMARK 620 2 HOH A 610 O 88.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1SF A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KNR RELATED DB: PDB REMARK 900 HIN GLMU BOUND TO WG188 REMARK 900 RELATED ID: 4KNX RELATED DB: PDB REMARK 900 HIN GLMU BOUND TO WG176 REMARK 900 RELATED ID: 4KPX RELATED DB: PDB REMARK 900 HIN GLMU BOUND TO WG766 REMARK 900 RELATED ID: 4KQL RELATED DB: PDB REMARK 900 HIN GLMU BOUND TO WG578 DBREF 4KPZ A 1 456 UNP P43889 GLMU_HAEIN 1 456 SEQRES 1 A 456 MET THR LYS LYS ALA LEU SER ALA VAL ILE LEU ALA ALA SEQRES 2 A 456 GLY LYS GLY THR ARG MET TYR SER ASP LEU PRO LYS VAL SEQRES 3 A 456 LEU HIS THR ILE ALA GLY LYS PRO MET VAL LYS HIS VAL SEQRES 4 A 456 ILE ASP THR ALA HIS GLN LEU GLY SER GLU ASN ILE HIS SEQRES 5 A 456 LEU ILE TYR GLY HIS GLY GLY ASP LEU MET ARG THR HIS SEQRES 6 A 456 LEU ALA ASN GLU GLN VAL ASN TRP VAL LEU GLN THR GLU SEQRES 7 A 456 GLN LEU GLY THR ALA HIS ALA VAL GLN GLN ALA ALA PRO SEQRES 8 A 456 PHE PHE LYS ASP ASN GLU ASN ILE VAL VAL LEU TYR GLY SEQRES 9 A 456 ASP ALA PRO LEU ILE THR LYS GLU THR LEU GLU LYS LEU SEQRES 10 A 456 ILE GLU ALA LYS PRO GLU ASN GLY ILE ALA LEU LEU THR SEQRES 11 A 456 VAL ASN LEU ASP ASN PRO THR GLY TYR GLY ARG ILE ILE SEQRES 12 A 456 ARG GLU ASN GLY ASN VAL VAL ALA ILE VAL GLU GLN LYS SEQRES 13 A 456 ASP ALA ASN ALA GLU GLN LEU ASN ILE LYS GLU VAL ASN SEQRES 14 A 456 THR GLY VAL MET VAL SER ASP GLY ALA SER PHE LYS LYS SEQRES 15 A 456 TRP LEU ALA ARG VAL GLY ASN ASN ASN ALA GLN GLY GLU SEQRES 16 A 456 TYR TYR LEU THR ASP LEU ILE ALA LEU ALA ASN GLN ASP SEQRES 17 A 456 ASN CYS GLN VAL VAL ALA VAL GLN ALA THR ASP VAL MET SEQRES 18 A 456 GLU VAL GLU GLY ALA ASN ASN ARG LEU GLN LEU ALA ALA SEQRES 19 A 456 LEU GLU ARG TYR PHE GLN ASN LYS GLN ALA SER LYS LEU SEQRES 20 A 456 LEU LEU GLU GLY VAL MET ILE TYR ASP PRO ALA ARG PHE SEQRES 21 A 456 ASP LEU ARG GLY THR LEU GLU HIS GLY LYS ASP VAL GLU SEQRES 22 A 456 ILE ASP VAL ASN VAL ILE ILE GLU GLY ASN VAL LYS LEU SEQRES 23 A 456 GLY ASP ARG VAL LYS ILE GLY THR GLY CYS VAL LEU LYS SEQRES 24 A 456 ASN VAL VAL ILE GLY ASN ASP VAL GLU ILE LYS PRO TYR SEQRES 25 A 456 SER VAL LEU GLU ASP SER ILE VAL GLY GLU LYS ALA ALA SEQRES 26 A 456 ILE GLY PRO PHE SER ARG LEU ARG PRO GLY ALA GLU LEU SEQRES 27 A 456 ALA ALA GLU THR HIS VAL GLY ASN PHE VAL GLU ILE LYS SEQRES 28 A 456 LYS SER THR VAL GLY LYS GLY SER LYS VAL ASN HIS LEU SEQRES 29 A 456 THR TYR VAL GLY ASP SER GLU ILE GLY SER ASN CYS ASN SEQRES 30 A 456 ILE GLY ALA GLY VAL ILE THR CYS ASN TYR ASP GLY ALA SEQRES 31 A 456 ASN LYS PHE LYS THR ILE ILE GLY ASP ASP VAL PHE VAL SEQRES 32 A 456 GLY SER ASP THR GLN LEU VAL ALA PRO VAL LYS VAL ALA SEQRES 33 A 456 ASN GLY ALA THR ILE GLY ALA GLY THR THR ILE THR ARG SEQRES 34 A 456 ASP VAL GLY GLU ASN GLU LEU VAL ILE THR ARG VAL ALA SEQRES 35 A 456 GLN ARG HIS ILE GLN GLY TRP GLN ARG PRO ILE LYS LYS SEQRES 36 A 456 LYS HET 1SF A 501 17 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET MG A 508 1 HET MG A 509 1 HET PG4 A 510 13 HET PG4 A 511 13 HETNAM 1SF 1-(3-NITROPHENYL)DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 1SF C10 H9 N3 O4 FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 MG 2(MG 2+) FORMUL 11 PG4 2(C8 H18 O5) FORMUL 13 HOH *510(H2 O) HELIX 1 1 GLY A 16 TYR A 20 5 5 HELIX 2 2 PRO A 24 LEU A 27 5 4 HELIX 3 3 MET A 35 LEU A 46 1 12 HELIX 4 4 GLY A 58 LEU A 66 1 9 HELIX 5 5 GLY A 81 ALA A 90 1 10 HELIX 6 6 PRO A 91 PHE A 93 5 3 HELIX 7 7 THR A 110 ALA A 120 1 11 HELIX 8 8 ASN A 159 ASN A 164 1 6 HELIX 9 9 GLY A 177 ALA A 185 1 9 HELIX 10 10 TYR A 197 THR A 199 5 3 HELIX 11 11 ASP A 200 ASP A 208 1 9 HELIX 12 12 VAL A 220 GLU A 224 5 5 HELIX 13 13 ASN A 228 GLU A 250 1 23 HELIX 14 14 ASP A 256 ALA A 258 5 3 SHEET 1 A 7 ASN A 72 LEU A 75 0 SHEET 2 A 7 ILE A 51 TYR A 55 1 N ILE A 51 O ASN A 72 SHEET 3 A 7 LEU A 6 LEU A 11 1 N ALA A 8 O HIS A 52 SHEET 4 A 7 ASN A 98 TYR A 103 1 O LEU A 102 N VAL A 9 SHEET 5 A 7 GLU A 167 ASP A 176 -1 O MET A 173 N VAL A 101 SHEET 6 A 7 ILE A 126 ASN A 132 -1 N VAL A 131 O VAL A 168 SHEET 7 A 7 VAL A 212 GLN A 216 1 O VAL A 213 N LEU A 128 SHEET 1 B 2 THR A 29 ILE A 30 0 SHEET 2 B 2 LYS A 33 PRO A 34 -1 O LYS A 33 N ILE A 30 SHEET 1 C 2 ARG A 141 GLU A 145 0 SHEET 2 C 2 ASN A 148 VAL A 153 -1 O VAL A 153 N ARG A 141 SHEET 1 D13 MET A 253 ILE A 254 0 SHEET 2 D13 GLU A 273 ILE A 274 1 O ILE A 274 N MET A 253 SHEET 3 D13 LYS A 291 ILE A 292 1 O ILE A 292 N GLU A 273 SHEET 4 D13 GLU A 308 ILE A 309 1 O ILE A 309 N LYS A 291 SHEET 5 D13 ALA A 325 ILE A 326 1 O ILE A 326 N GLU A 308 SHEET 6 D13 HIS A 343 LYS A 351 1 O VAL A 344 N ALA A 325 SHEET 7 D13 SER A 330 LEU A 332 1 N ARG A 331 O VAL A 348 SHEET 8 D13 VAL A 314 VAL A 320 1 N VAL A 314 O LEU A 332 SHEET 9 D13 GLU A 337 LEU A 338 1 O LEU A 338 N ILE A 319 SHEET 10 D13 THR A 354 VAL A 355 1 O VAL A 355 N GLU A 337 SHEET 11 D13 SER A 370 ILE A 372 1 O ILE A 372 N THR A 354 SHEET 12 D13 THR A 395 ILE A 397 1 O ILE A 397 N GLU A 371 SHEET 13 D13 VAL A 413 VAL A 415 1 O VAL A 415 N ILE A 396 SHEET 1 E11 PHE A 260 HIS A 268 0 SHEET 2 E11 VAL A 278 LEU A 286 1 O ILE A 280 N ARG A 263 SHEET 3 E11 VAL A 297 ILE A 303 1 O LEU A 298 N GLU A 281 SHEET 4 E11 VAL A 314 VAL A 320 1 O LEU A 315 N VAL A 297 SHEET 5 E11 SER A 330 LEU A 332 1 O LEU A 332 N VAL A 314 SHEET 6 E11 HIS A 343 LYS A 351 1 O VAL A 348 N ARG A 331 SHEET 7 E11 LYS A 360 GLY A 368 1 O VAL A 367 N LYS A 351 SHEET 8 E11 ASN A 377 ILE A 378 1 O ILE A 378 N LYS A 360 SHEET 9 E11 PHE A 402 VAL A 403 1 O VAL A 403 N ASN A 377 SHEET 10 E11 THR A 420 ILE A 421 1 O ILE A 421 N PHE A 402 SHEET 11 E11 LEU A 436 VAL A 437 1 O VAL A 437 N THR A 420 SHEET 1 F 3 ILE A 383 ASN A 386 0 SHEET 2 F 3 GLN A 408 ALA A 411 1 O LEU A 409 N ILE A 383 SHEET 3 F 3 THR A 426 ILE A 427 1 O ILE A 427 N VAL A 410 LINK OD1 ASP A 406 MG MG A 508 1555 1555 2.18 LINK OD2 ASP A 406 MG MG A 509 1555 1555 2.21 LINK MG MG A 508 O HOH A1009 1555 1555 2.06 LINK MG MG A 509 O HOH A 610 1555 1555 2.07 CISPEP 1 GLY A 327 PRO A 328 0 -2.92 CISPEP 2 ALA A 411 PRO A 412 0 -3.10 SITE 1 AC1 12 LEU A 11 ALA A 12 ALA A 13 GLY A 14 SITE 2 AC1 12 VAL A 26 GLN A 76 GLN A 79 LEU A 80 SITE 3 AC1 12 GLY A 81 THR A 82 TYR A 103 ASP A 105 SITE 1 AC2 5 LYS A 4 LYS A 121 GLU A 123 HOH A 691 SITE 2 AC2 5 HOH A 840 SITE 1 AC3 5 LYS A 15 GLY A 16 THR A 17 HOH A 681 SITE 2 AC3 5 HOH A1004 SITE 1 AC4 4 ARG A 331 ARG A 333 PRO A 334 HOH A1080 SITE 1 AC5 5 ARG A 333 LYS A 351 HIS A 363 TYR A 366 SITE 2 AC5 5 HOH A1088 SITE 1 AC6 4 HIS A 57 GLY A 58 HOH A 848 HOH A1061 SITE 1 AC7 3 ASN A 227 GLN A 231 HOH A1025 SITE 1 AC8 2 ASP A 406 HOH A1009 SITE 1 AC9 2 ASP A 406 HOH A 610 SITE 1 BC1 9 ASN A 72 ASN A 386 ASP A 388 THR A 420 SITE 2 BC1 9 GLY A 422 ALA A 423 HOH A 641 HOH A1002 SITE 3 BC1 9 HOH A1090 SITE 1 BC2 10 ASP A 157 ASN A 159 GLN A 162 ASN A 189 SITE 2 BC2 10 ASN A 191 ALA A 192 GLY A 194 HOH A1054 SITE 3 BC2 10 HOH A1089 HOH A1108 CRYST1 108.751 108.751 327.488 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009195 0.005309 0.000000 0.00000 SCALE2 0.000000 0.010618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003054 0.00000