HEADER SIGNALING PROTEIN 14-MAY-13 4KQD TITLE THE CRYSTAL STRUCTURE OF THE N-TERMINAL PAS DOMAIN OF THE F PLASMID TITLE 2 TRAJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRAJ; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ECOK12F072, TRAJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAS DOMAIN, TRANSCRIPTIONAL REGULATOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LU,J.N.M.GLOVER REVDAT 2 28-FEB-24 4KQD 1 REMARK SEQADV REVDAT 1 02-JUL-14 4KQD 0 JRNL AUTH J.LU,J.N.M.GLOVER JRNL TITL THE CRYSTAL STRUCTURE OF THE N-TERMINAL PAS DOMAIN OF THE F JRNL TITL 2 PLASMID TRAJ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 71829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3797 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4057 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3717 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5536 ; 1.269 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8525 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;39.907 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;14.368 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4683 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 1.447 ; 1.412 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1851 ; 1.447 ; 1.411 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2318 ; 1.822 ; 2.117 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2205 ; 1.821 ; 1.757 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7774 ; 2.357 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 117 ;27.460 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7874 ; 6.919 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 96.9450 41.7200 40.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0513 REMARK 3 T33: 0.1061 T12: -0.0261 REMARK 3 T13: 0.0304 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3342 L22: 1.8516 REMARK 3 L33: 0.9031 L12: -0.0379 REMARK 3 L13: -0.3789 L23: -0.2871 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.0107 S13: 0.0234 REMARK 3 S21: 0.0081 S22: -0.0049 S23: 0.0241 REMARK 3 S31: 0.0257 S32: 0.0028 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 97.5990 20.8960 32.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0612 REMARK 3 T33: 0.1587 T12: -0.0225 REMARK 3 T13: 0.0682 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.6512 L22: 1.9661 REMARK 3 L33: 0.6964 L12: -0.1138 REMARK 3 L13: 0.1479 L23: 0.5103 REMARK 3 S TENSOR REMARK 3 S11: -0.1536 S12: 0.0760 S13: -0.1472 REMARK 3 S21: -0.0393 S22: 0.0903 S23: 0.1361 REMARK 3 S31: -0.0063 S32: 0.0095 S33: 0.0633 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 121 REMARK 3 ORIGIN FOR THE GROUP (A): 60.6000 23.8400 8.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.0402 REMARK 3 T33: 0.1173 T12: 0.0019 REMARK 3 T13: 0.0279 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.6520 L22: 1.1390 REMARK 3 L33: 1.2090 L12: -0.5544 REMARK 3 L13: 0.3640 L23: -0.1544 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.0243 S13: -0.0747 REMARK 3 S21: -0.0061 S22: 0.0452 S23: 0.0817 REMARK 3 S31: -0.0267 S32: 0.0323 S33: 0.0141 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 126 REMARK 3 ORIGIN FOR THE GROUP (A): 78.8390 13.1330 0.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0521 REMARK 3 T33: 0.1193 T12: -0.0027 REMARK 3 T13: 0.0419 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 2.3746 L22: 2.2052 REMARK 3 L33: 1.1104 L12: 0.1668 REMARK 3 L13: -0.7652 L23: 0.3861 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.0774 S13: -0.1108 REMARK 3 S21: -0.1897 S22: 0.0443 S23: -0.0138 REMARK 3 S31: -0.0015 S32: 0.0049 S33: 0.0295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11584, 0.979566, 0.953697, REMARK 200 0.979685 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 82.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 8.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.70800 REMARK 200 R SYM FOR SHELL (I) : 0.60900 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 CITRATE, 5% GLYCEROL, 5 MM DTT, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.01367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.02733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.02050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.03417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.00683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 126 REMARK 465 ASP A 127 REMARK 465 SER A 128 REMARK 465 TYR A 129 REMARK 465 ASN A 130 REMARK 465 GLY B 10 REMARK 465 GLN B 11 REMARK 465 ILE B 12 REMARK 465 TYR B 129 REMARK 465 ASN B 130 REMARK 465 GLY C 10 REMARK 465 GLN C 11 REMARK 465 ILE C 12 REMARK 465 HIS C 122 REMARK 465 VAL C 123 REMARK 465 ARG C 124 REMARK 465 HIS C 125 REMARK 465 LYS C 126 REMARK 465 ASP C 127 REMARK 465 SER C 128 REMARK 465 TYR C 129 REMARK 465 ASN C 130 REMARK 465 GLY D 10 REMARK 465 GLN D 11 REMARK 465 ASP D 127 REMARK 465 SER D 128 REMARK 465 TYR D 129 REMARK 465 ASN D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 94 -74.45 67.10 REMARK 500 ASN A 95 19.89 -153.32 REMARK 500 LEU B 50 54.77 -106.51 REMARK 500 GLN B 63 78.97 -106.21 REMARK 500 GLU B 81 54.25 -108.56 REMARK 500 LEU C 50 53.69 -95.58 REMARK 500 GLN C 63 76.29 -102.66 REMARK 500 LEU D 50 54.63 -103.80 REMARK 500 GLN D 63 78.77 -108.84 REMARK 500 GLU D 81 63.17 36.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD D 201 DBREF 4KQD A 11 130 UNP P06626 TRAJ1_ECOLI 14 133 DBREF 4KQD B 11 130 UNP P06626 TRAJ1_ECOLI 14 133 DBREF 4KQD C 11 130 UNP P06626 TRAJ1_ECOLI 14 133 DBREF 4KQD D 11 130 UNP P06626 TRAJ1_ECOLI 14 133 SEQADV 4KQD GLY A 10 UNP P06626 EXPRESSION TAG SEQADV 4KQD GLY B 10 UNP P06626 EXPRESSION TAG SEQADV 4KQD GLY C 10 UNP P06626 EXPRESSION TAG SEQADV 4KQD GLY D 10 UNP P06626 EXPRESSION TAG SEQRES 1 A 121 GLY GLN ILE ASP LEU LEU GLU ASN LEU THR ALA VAL ILE SEQRES 2 A 121 GLN ASP TYR PRO ASN PRO ALA CYS ILE ARG ASP GLU THR SEQRES 3 A 121 GLY LYS PHE ILE PHE CYS ASN THR LEU PHE HIS GLU SER SEQRES 4 A 121 PHE LEU THR GLN ASP GLN SER ALA GLU LYS TRP LEU LEU SEQRES 5 A 121 SER GLN ARG ASP PHE CYS GLU LEU ILE SER VAL THR GLU SEQRES 6 A 121 MET GLU ALA TYR ARG ASN GLU HIS THR HIS LEU ASN LEU SEQRES 7 A 121 VAL GLU ASP VAL PHE ILE GLN ASN ARG PHE TRP THR ILE SEQRES 8 A 121 SER VAL GLN SER PHE LEU ASN GLY HIS ARG ASN ILE ILE SEQRES 9 A 121 LEU TRP GLN PHE TYR ASP ALA ALA HIS VAL ARG HIS LYS SEQRES 10 A 121 ASP SER TYR ASN SEQRES 1 B 121 GLY GLN ILE ASP LEU LEU GLU ASN LEU THR ALA VAL ILE SEQRES 2 B 121 GLN ASP TYR PRO ASN PRO ALA CYS ILE ARG ASP GLU THR SEQRES 3 B 121 GLY LYS PHE ILE PHE CYS ASN THR LEU PHE HIS GLU SER SEQRES 4 B 121 PHE LEU THR GLN ASP GLN SER ALA GLU LYS TRP LEU LEU SEQRES 5 B 121 SER GLN ARG ASP PHE CYS GLU LEU ILE SER VAL THR GLU SEQRES 6 B 121 MET GLU ALA TYR ARG ASN GLU HIS THR HIS LEU ASN LEU SEQRES 7 B 121 VAL GLU ASP VAL PHE ILE GLN ASN ARG PHE TRP THR ILE SEQRES 8 B 121 SER VAL GLN SER PHE LEU ASN GLY HIS ARG ASN ILE ILE SEQRES 9 B 121 LEU TRP GLN PHE TYR ASP ALA ALA HIS VAL ARG HIS LYS SEQRES 10 B 121 ASP SER TYR ASN SEQRES 1 C 121 GLY GLN ILE ASP LEU LEU GLU ASN LEU THR ALA VAL ILE SEQRES 2 C 121 GLN ASP TYR PRO ASN PRO ALA CYS ILE ARG ASP GLU THR SEQRES 3 C 121 GLY LYS PHE ILE PHE CYS ASN THR LEU PHE HIS GLU SER SEQRES 4 C 121 PHE LEU THR GLN ASP GLN SER ALA GLU LYS TRP LEU LEU SEQRES 5 C 121 SER GLN ARG ASP PHE CYS GLU LEU ILE SER VAL THR GLU SEQRES 6 C 121 MET GLU ALA TYR ARG ASN GLU HIS THR HIS LEU ASN LEU SEQRES 7 C 121 VAL GLU ASP VAL PHE ILE GLN ASN ARG PHE TRP THR ILE SEQRES 8 C 121 SER VAL GLN SER PHE LEU ASN GLY HIS ARG ASN ILE ILE SEQRES 9 C 121 LEU TRP GLN PHE TYR ASP ALA ALA HIS VAL ARG HIS LYS SEQRES 10 C 121 ASP SER TYR ASN SEQRES 1 D 121 GLY GLN ILE ASP LEU LEU GLU ASN LEU THR ALA VAL ILE SEQRES 2 D 121 GLN ASP TYR PRO ASN PRO ALA CYS ILE ARG ASP GLU THR SEQRES 3 D 121 GLY LYS PHE ILE PHE CYS ASN THR LEU PHE HIS GLU SER SEQRES 4 D 121 PHE LEU THR GLN ASP GLN SER ALA GLU LYS TRP LEU LEU SEQRES 5 D 121 SER GLN ARG ASP PHE CYS GLU LEU ILE SER VAL THR GLU SEQRES 6 D 121 MET GLU ALA TYR ARG ASN GLU HIS THR HIS LEU ASN LEU SEQRES 7 D 121 VAL GLU ASP VAL PHE ILE GLN ASN ARG PHE TRP THR ILE SEQRES 8 D 121 SER VAL GLN SER PHE LEU ASN GLY HIS ARG ASN ILE ILE SEQRES 9 D 121 LEU TRP GLN PHE TYR ASP ALA ALA HIS VAL ARG HIS LYS SEQRES 10 D 121 ASP SER TYR ASN HET DTT A 201 8 HET DTD B 201 8 HET GOL C 201 6 HET DTD D 201 8 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM DTD DITHIANE DIOL HETNAM GOL GLYCEROL HETSYN DTT 1,4-DITHIOTHREITOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 DTT C4 H10 O2 S2 FORMUL 6 DTD 2(C4 H8 O2 S2) FORMUL 7 GOL C3 H8 O3 FORMUL 9 HOH *333(H2 O) HELIX 1 1 ASP A 13 GLN A 23 1 11 HELIX 2 2 ASN A 42 LEU A 50 1 9 HELIX 3 3 SER A 55 GLN A 63 1 9 HELIX 4 4 PHE A 66 TYR A 78 1 13 HELIX 5 5 LEU B 14 ASP B 24 1 11 HELIX 6 6 ASN B 42 LEU B 50 1 9 HELIX 7 7 SER B 55 GLN B 63 1 9 HELIX 8 8 GLN B 63 ASN B 80 1 18 HELIX 9 9 LEU C 14 GLN C 23 1 10 HELIX 10 10 ASN C 42 PHE C 49 1 8 HELIX 11 11 SER C 55 SER C 62 1 8 HELIX 12 12 GLN C 63 GLU C 74 1 12 HELIX 13 13 ASP D 13 ASP D 24 1 12 HELIX 14 14 ASN D 42 LEU D 50 1 9 HELIX 15 15 SER D 55 GLN D 63 1 9 HELIX 16 16 GLN D 63 ARG D 79 1 17 SHEET 1 A 6 PHE A 38 CYS A 41 0 SHEET 2 A 6 ALA A 29 ASP A 33 -1 N ILE A 31 O PHE A 40 SHEET 3 A 6 ARG A 110 TYR A 118 -1 O ILE A 113 N ARG A 32 SHEET 4 A 6 ARG A 96 ASN A 107 -1 N THR A 99 O TYR A 118 SHEET 5 A 6 LEU A 85 ILE A 93 -1 N VAL A 88 O ILE A 100 SHEET 6 A 6 VAL B 123 ASP B 127 1 O ARG B 124 N LEU A 87 SHEET 1 B 6 ALA A 120 ARG A 124 0 SHEET 2 B 6 HIS B 84 ILE B 93 1 O LEU B 85 N HIS A 122 SHEET 3 B 6 ARG B 96 ASN B 107 -1 O TRP B 98 N VAL B 91 SHEET 4 B 6 ARG B 110 ASP B 119 -1 O LEU B 114 N GLN B 103 SHEET 5 B 6 ALA B 29 ASP B 33 -1 N ARG B 32 O ILE B 113 SHEET 6 B 6 PHE B 38 CYS B 41 -1 O PHE B 40 N ILE B 31 SHEET 1 C 6 PHE C 38 CYS C 41 0 SHEET 2 C 6 ALA C 29 ASP C 33 -1 N ILE C 31 O PHE C 40 SHEET 3 C 6 ARG C 110 ASP C 119 -1 O ILE C 113 N ARG C 32 SHEET 4 C 6 ARG C 96 ASN C 107 -1 N ASN C 107 O ARG C 110 SHEET 5 C 6 LEU C 85 ILE C 93 -1 N VAL C 91 O TRP C 98 SHEET 6 C 6 VAL D 123 LYS D 126 1 O ARG D 124 N LEU C 87 SHEET 1 D 5 PHE D 38 CYS D 41 0 SHEET 2 D 5 ALA D 29 ASP D 33 -1 N ILE D 31 O PHE D 40 SHEET 3 D 5 ARG D 110 ASP D 119 -1 O TRP D 115 N CYS D 30 SHEET 4 D 5 ARG D 96 ASN D 107 -1 N THR D 99 O TYR D 118 SHEET 5 D 5 ASN D 86 ILE D 93 -1 N VAL D 91 O TRP D 98 CISPEP 1 ALA C 120 ALA C 121 0 -0.96 SITE 1 AC1 9 SER A 62 GLN A 63 ARG A 64 ILE A 93 SITE 2 AC1 9 GLN A 94 HOH A 304 THR C 35 GLY C 36 SITE 3 AC1 9 GLU C 57 SITE 1 AC2 5 GLN A 103 PHE A 105 GLN A 116 GLN B 103 SITE 2 AC2 5 GLN B 116 SITE 1 AC3 6 ASP C 65 VAL C 91 PHE C 92 HOH C 336 SITE 2 AC3 6 HOH C 394 HOH C 398 SITE 1 AC4 5 PHE C 105 GLN C 116 HOH C 323 GLN D 103 SITE 2 AC4 5 GLN D 116 CRYST1 95.228 95.228 102.041 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010501 0.006063 0.000000 0.00000 SCALE2 0.000000 0.012126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009800 0.00000