HEADER LIGASE 15-MAY-13 4KQE TITLE THE MUTANT STRUCTURE OF THE HUMAN GLYCYL-TRNA SYNTHETASE E71G COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55-739; COMPND 5 SYNONYM: GLYCYL-TRNA SYNTHETASE, DIADENOSINE TETRAPHOSPHATE COMPND 6 SYNTHETASE, AP-4-A SYNTHETASE, GLYRS; COMPND 7 EC: 6.1.1.14; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS ROSSMANN FOLD, AMINOACYLATION, TRNA-GLY, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR X.QIN,Z.HAO,Q.TIAN,Z.ZHANG,C.ZHOU,W.XIE REVDAT 4 08-NOV-23 4KQE 1 REMARK SEQADV REVDAT 3 13-APR-16 4KQE 1 JRNL TITLE REVDAT 2 28-MAY-14 4KQE 1 JRNL REVDAT 1 21-MAY-14 4KQE 0 JRNL AUTH X.DENG,X.QIN,L.CHEN,Q.JIA,Y.ZHANG,Z.ZHANG,D.LEI,G.REN, JRNL AUTH 2 Z.ZHOU,Z.WANG,Q.LI,W.XIE JRNL TITL LARGE CONFORMATIONAL CHANGES OF INSERTION 3 IN HUMAN JRNL TITL 2 GLYCYL-TRNA SYNTHETASE (HGLYRS) DURING CATALYSIS JRNL REF J.BIOL.CHEM. V. 291 5740 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26797133 JRNL DOI 10.1074/JBC.M115.679126 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 28038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6678 - 5.8921 1.00 2924 137 0.2203 0.2780 REMARK 3 2 5.8921 - 4.6804 1.00 2741 158 0.1985 0.2253 REMARK 3 3 4.6804 - 4.0898 1.00 2667 172 0.1675 0.2085 REMARK 3 4 4.0898 - 3.7164 1.00 2650 160 0.1973 0.2592 REMARK 3 5 3.7164 - 3.4503 0.99 2641 136 0.2086 0.2350 REMARK 3 6 3.4503 - 3.2470 0.99 2623 137 0.2059 0.2431 REMARK 3 7 3.2470 - 3.0845 0.99 2643 123 0.2288 0.2637 REMARK 3 8 3.0845 - 2.9503 0.99 2628 114 0.2468 0.3606 REMARK 3 9 2.9503 - 2.8368 0.99 2589 142 0.2643 0.3322 REMARK 3 10 2.8368 - 2.7389 0.96 2510 143 0.2794 0.3356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4757 REMARK 3 ANGLE : 0.785 6435 REMARK 3 CHIRALITY : 0.056 704 REMARK 3 PLANARITY : 0.004 846 REMARK 3 DIHEDRAL : 13.703 1732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.739 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2PME REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM CITRATE, 17% PEG3350, REMARK 280 0.1M TRIS-HCL, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.30700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.61950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.61950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.96050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.61950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.61950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.65350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.61950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.61950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 184.96050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.61950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.61950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.65350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.30700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 91.23900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -91.23900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ARG A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 ASP A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 LYS A 26 REMARK 465 LEU A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 GLN A 34 REMARK 465 VAL A 35 REMARK 465 ASP A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 LYS A 39 REMARK 465 ALA A 40 REMARK 465 VAL A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ALA A 46 REMARK 465 ARG A 47 REMARK 465 LYS A 48 REMARK 465 ARG A 49 REMARK 465 VAL A 50 REMARK 465 LEU A 51 REMARK 465 GLU A 52 REMARK 465 ALA A 53 REMARK 465 LYS A 54 REMARK 465 GLU A 55 REMARK 465 LEU A 56 REMARK 465 ALA A 57 REMARK 465 LEU A 58 REMARK 465 GLN A 59 REMARK 465 PRO A 60 REMARK 465 LYS A 61 REMARK 465 ASP A 62 REMARK 465 ASP A 63 REMARK 465 MET A 383 REMARK 465 ALA A 384 REMARK 465 HIS A 385 REMARK 465 TYR A 386 REMARK 465 ALA A 387 REMARK 465 LYS A 436 REMARK 465 THR A 437 REMARK 465 VAL A 438 REMARK 465 ASN A 439 REMARK 465 VAL A 440 REMARK 465 VAL A 441 REMARK 465 THR A 510 REMARK 465 LEU A 511 REMARK 465 TYR A 512 REMARK 465 GLN A 675 REMARK 465 GLU A 676 REMARK 465 THR A 677 REMARK 465 GLY A 678 REMARK 465 LYS A 679 REMARK 465 LYS A 680 REMARK 465 GLU A 681 REMARK 465 THR A 682 REMARK 465 ILE A 683 REMARK 465 GLU A 684 REMARK 465 GLU A 685 REMARK 465 LEU A 686 REMARK 465 GLU A 687 REMARK 465 HIS A 688 REMARK 465 HIS A 689 REMARK 465 HIS A 690 REMARK 465 HIS A 691 REMARK 465 HIS A 692 REMARK 465 HIS A 693 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 ILE A 467 CG1 CG2 CD1 REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 LEU A 479 CG CD1 CD2 REMARK 470 LEU A 480 CG CD1 CD2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 ILE A 502 CG1 CG2 CD1 REMARK 470 ASN A 503 CG OD1 ND2 REMARK 470 VAL A 504 CG1 CG2 REMARK 470 ARG A 506 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 508 CG CD OE1 NE2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 VAL A 513 CG1 CG2 REMARK 470 GLN A 571 CG CD OE1 NE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 94 O HOH A 850 7645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 114 -85.35 -59.73 REMARK 500 ALA A 190 27.17 -75.57 REMARK 500 GLN A 191 10.34 -158.75 REMARK 500 ASN A 278 68.83 -65.37 REMARK 500 ARG A 283 -131.44 -119.18 REMARK 500 SER A 284 23.84 41.46 REMARK 500 CYS A 407 89.81 -154.36 REMARK 500 LEU A 432 -150.54 -112.96 REMARK 500 LYS A 455 -88.45 -67.72 REMARK 500 ASN A 481 -76.90 -75.10 REMARK 500 GLU A 485 -105.00 -153.95 REMARK 500 PHE A 486 127.74 79.01 REMARK 500 GLU A 491 -89.89 42.44 REMARK 500 LYS A 493 -140.43 -148.11 REMARK 500 ILE A 502 -168.01 -163.96 REMARK 500 LYS A 505 -150.16 -132.86 REMARK 500 ARG A 506 -168.21 73.47 REMARK 500 GLN A 508 -159.73 -177.55 REMARK 500 GLN A 571 24.11 -68.00 REMARK 500 PHE A 672 109.68 -160.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KR2 RELATED DB: PDB REMARK 900 RELATED ID: 4KR3 RELATED DB: PDB DBREF 4KQE A 1 685 UNP P41250 SYG_HUMAN 55 739 SEQADV 4KQE GLY A 71 UNP P41250 GLU 125 ENGINEERED MUTATION SEQADV 4KQE LEU A 686 UNP P41250 EXPRESSION TAG SEQADV 4KQE GLU A 687 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 688 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 689 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 690 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 691 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 692 UNP P41250 EXPRESSION TAG SEQADV 4KQE HIS A 693 UNP P41250 EXPRESSION TAG SEQRES 1 A 693 MET ASP GLY ALA GLY ALA GLU GLU VAL LEU ALA PRO LEU SEQRES 2 A 693 ARG LEU ALA VAL ARG GLN GLN GLY ASP LEU VAL ARG LYS SEQRES 3 A 693 LEU LYS GLU ASP LYS ALA PRO GLN VAL ASP VAL ASP LYS SEQRES 4 A 693 ALA VAL ALA GLU LEU LYS ALA ARG LYS ARG VAL LEU GLU SEQRES 5 A 693 ALA LYS GLU LEU ALA LEU GLN PRO LYS ASP ASP ILE VAL SEQRES 6 A 693 ASP ARG ALA LYS MET GLY ASP THR LEU LYS ARG ARG PHE SEQRES 7 A 693 PHE TYR ASP GLN ALA PHE ALA ILE TYR GLY GLY VAL SER SEQRES 8 A 693 GLY LEU TYR ASP PHE GLY PRO VAL GLY CYS ALA LEU LYS SEQRES 9 A 693 ASN ASN ILE ILE GLN THR TRP ARG GLN HIS PHE ILE GLN SEQRES 10 A 693 GLU GLU GLN ILE LEU GLU ILE ASP CYS THR MET LEU THR SEQRES 11 A 693 PRO GLU PRO VAL LEU LYS THR SER GLY HIS VAL ASP LYS SEQRES 12 A 693 PHE ALA ASP PHE MET VAL LYS ASP VAL LYS ASN GLY GLU SEQRES 13 A 693 CYS PHE ARG ALA ASP HIS LEU LEU LYS ALA HIS LEU GLN SEQRES 14 A 693 LYS LEU MET SER ASP LYS LYS CYS SER VAL GLU LYS LYS SEQRES 15 A 693 SER GLU MET GLU SER VAL LEU ALA GLN LEU ASP ASN TYR SEQRES 16 A 693 GLY GLN GLN GLU LEU ALA ASP LEU PHE VAL ASN TYR ASN SEQRES 17 A 693 VAL LYS SER PRO ILE THR GLY ASN ASP LEU SER PRO PRO SEQRES 18 A 693 VAL SER PHE ASN LEU MET PHE LYS THR PHE ILE GLY PRO SEQRES 19 A 693 GLY GLY ASN MET PRO GLY TYR LEU ARG PRO GLU THR ALA SEQRES 20 A 693 GLN GLY ILE PHE LEU ASN PHE LYS ARG LEU LEU GLU PHE SEQRES 21 A 693 ASN GLN GLY LYS LEU PRO PHE ALA ALA ALA GLN ILE GLY SEQRES 22 A 693 ASN SER PHE ARG ASN GLU ILE SER PRO ARG SER GLY LEU SEQRES 23 A 693 ILE ARG VAL ARG GLU PHE THR MET ALA GLU ILE GLU HIS SEQRES 24 A 693 PHE VAL ASP PRO SER GLU LYS ASP HIS PRO LYS PHE GLN SEQRES 25 A 693 ASN VAL ALA ASP LEU HIS LEU TYR LEU TYR SER ALA LYS SEQRES 26 A 693 ALA GLN VAL SER GLY GLN SER ALA ARG LYS MET ARG LEU SEQRES 27 A 693 GLY ASP ALA VAL GLU GLN GLY VAL ILE ASN ASN THR VAL SEQRES 28 A 693 LEU GLY TYR PHE ILE GLY ARG ILE TYR LEU TYR LEU THR SEQRES 29 A 693 LYS VAL GLY ILE SER PRO ASP LYS LEU ARG PHE ARG GLN SEQRES 30 A 693 HIS MET GLU ASN GLU MET ALA HIS TYR ALA CYS ASP CYS SEQRES 31 A 693 TRP ASP ALA GLU SER LYS THR SER TYR GLY TRP ILE GLU SEQRES 32 A 693 ILE VAL GLY CYS ALA ASP ARG SER CYS TYR ASP LEU SER SEQRES 33 A 693 CYS HIS ALA ARG ALA THR LYS VAL PRO LEU VAL ALA GLU SEQRES 34 A 693 LYS PRO LEU LYS GLU PRO LYS THR VAL ASN VAL VAL GLN SEQRES 35 A 693 PHE GLU PRO SER LYS GLY ALA ILE GLY LYS ALA TYR LYS SEQRES 36 A 693 LYS ASP ALA LYS LEU VAL MET GLU TYR LEU ALA ILE CYS SEQRES 37 A 693 ASP GLU CYS TYR ILE THR GLU MET GLU MET LEU LEU ASN SEQRES 38 A 693 GLU LYS GLY GLU PHE THR ILE GLU THR GLU GLY LYS THR SEQRES 39 A 693 PHE GLN LEU THR LYS ASP MET ILE ASN VAL LYS ARG PHE SEQRES 40 A 693 GLN LYS THR LEU TYR VAL GLU GLU VAL VAL PRO ASN VAL SEQRES 41 A 693 ILE GLU PRO SER PHE GLY LEU GLY ARG ILE MET TYR THR SEQRES 42 A 693 VAL PHE GLU HIS THR PHE HIS VAL ARG GLU GLY ASP GLU SEQRES 43 A 693 GLN ARG THR PHE PHE SER PHE PRO ALA VAL VAL ALA PRO SEQRES 44 A 693 PHE LYS CYS SER VAL LEU PRO LEU SER GLN ASN GLN GLU SEQRES 45 A 693 PHE MET PRO PHE VAL LYS GLU LEU SER GLU ALA LEU THR SEQRES 46 A 693 ARG HIS GLY VAL SER HIS LYS VAL ASP ASP SER SER GLY SEQRES 47 A 693 SER ILE GLY ARG ARG TYR ALA ARG THR ASP GLU ILE GLY SEQRES 48 A 693 VAL ALA PHE GLY VAL THR ILE ASP PHE ASP THR VAL ASN SEQRES 49 A 693 LYS THR PRO HIS THR ALA THR LEU ARG ASP ARG ASP SER SEQRES 50 A 693 MET ARG GLN ILE ARG ALA GLU ILE SER GLU LEU PRO SER SEQRES 51 A 693 ILE VAL GLN ASP LEU ALA ASN GLY ASN ILE THR TRP ALA SEQRES 52 A 693 ASP VAL GLU ALA ARG TYR PRO LEU PHE GLU GLY GLN GLU SEQRES 53 A 693 THR GLY LYS LYS GLU THR ILE GLU GLU LEU GLU HIS HIS SEQRES 54 A 693 HIS HIS HIS HIS HET GOL A 701 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *100(H2 O) HELIX 1 1 ASP A 66 ARG A 77 1 12 HELIX 2 2 PHE A 84 GLY A 88 5 5 HELIX 3 3 GLY A 97 GLN A 120 1 24 HELIX 4 4 GLU A 132 SER A 138 1 7 HELIX 5 5 GLY A 139 PHE A 144 1 6 HELIX 6 6 ALA A 160 SER A 173 1 14 HELIX 7 7 SER A 178 ALA A 190 1 13 HELIX 8 8 GLY A 196 TYR A 207 1 12 HELIX 9 9 THR A 246 ASN A 253 1 8 HELIX 10 10 ASN A 253 ASN A 261 1 9 HELIX 11 11 SER A 284 ARG A 288 5 5 HELIX 12 12 ASP A 302 LYS A 306 5 5 HELIX 13 13 LYS A 310 VAL A 314 5 5 HELIX 14 14 SER A 323 SER A 329 1 7 HELIX 15 15 LEU A 338 GLN A 344 1 7 HELIX 16 16 ASN A 349 VAL A 366 1 18 HELIX 17 17 SER A 369 ASP A 371 5 3 HELIX 18 18 CYS A 412 LYS A 423 1 12 HELIX 19 19 SER A 446 TYR A 454 1 9 HELIX 20 20 ASP A 457 ALA A 466 1 10 HELIX 21 21 ASP A 469 GLU A 482 1 14 HELIX 22 22 LEU A 527 THR A 538 1 12 HELIX 23 23 PHE A 573 HIS A 587 1 15 HELIX 24 24 SER A 599 ILE A 610 1 12 HELIX 25 25 ASP A 619 LYS A 625 1 7 HELIX 26 26 GLU A 647 ASN A 657 1 11 HELIX 27 27 THR A 661 ALA A 667 1 7 SHEET 1 A 2 TYR A 80 GLN A 82 0 SHEET 2 A 2 TYR A 94 PHE A 96 -1 O ASP A 95 N ASP A 81 SHEET 1 B 9 LEU A 122 GLU A 123 0 SHEET 2 B 9 PHE A 267 PHE A 276 1 O ALA A 268 N LEU A 122 SHEET 3 B 9 GLU A 291 VAL A 301 -1 O GLU A 298 N ALA A 269 SHEET 4 B 9 ASN A 519 GLY A 526 -1 O ASN A 519 N VAL A 301 SHEET 5 B 9 GLY A 400 SER A 411 -1 N ARG A 410 O VAL A 520 SHEET 6 B 9 ASP A 389 THR A 397 -1 N ALA A 393 O VAL A 405 SHEET 7 B 9 LEU A 373 GLN A 377 -1 N ARG A 374 O GLU A 394 SHEET 8 B 9 HIS A 318 TYR A 322 1 N TYR A 322 O PHE A 375 SHEET 9 B 9 ARG A 334 ARG A 337 -1 O MET A 336 N LEU A 319 SHEET 1 C 3 LEU A 129 PRO A 131 0 SHEET 2 C 3 PRO A 239 LEU A 242 -1 O TYR A 241 N THR A 130 SHEET 3 C 3 LYS A 229 PHE A 231 -1 N THR A 230 O GLY A 240 SHEET 1 D 3 CYS A 157 ARG A 159 0 SHEET 2 D 3 ALA A 145 LYS A 150 -1 N VAL A 149 O PHE A 158 SHEET 3 D 3 VAL A 222 ASN A 225 -1 O VAL A 222 N MET A 148 SHEET 1 E 2 ALA A 428 LYS A 430 0 SHEET 2 E 2 GLU A 514 VAL A 516 -1 O GLU A 514 N LYS A 430 SHEET 1 F 2 THR A 487 THR A 490 0 SHEET 2 F 2 LYS A 493 GLN A 496 -1 O LYS A 493 N THR A 490 SHEET 1 G 2 PHE A 539 VAL A 541 0 SHEET 2 G 2 THR A 549 PHE A 551 -1 O PHE A 550 N HIS A 540 SHEET 1 H 5 HIS A 591 VAL A 593 0 SHEET 2 H 5 CYS A 562 PRO A 566 1 N VAL A 564 O LYS A 592 SHEET 3 H 5 PHE A 614 ILE A 618 1 O VAL A 616 N SER A 563 SHEET 4 H 5 THR A 629 ASP A 634 -1 O ARG A 633 N GLY A 615 SHEET 5 H 5 GLN A 640 GLU A 644 -1 O ALA A 643 N ALA A 630 CISPEP 1 LEU A 265 PRO A 266 0 1.43 CISPEP 2 THR A 626 PRO A 627 0 1.82 SITE 1 AC1 3 ASP A 621 PRO A 627 THR A 629 CRYST1 91.239 91.239 246.614 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004055 0.00000