HEADER TRANSFERASE 15-MAY-13 4KQI TITLE CRYSTAL STRUCTURE OF COBT E317A COMPLEXED WITH ITS REACTION PRODUCTS CAVEAT 4KQI SEVERAL COVALENT BOND ANGLES DEVIATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE COMPND 3 PHOSPHORIBOSYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: NN:DBI PRT, N(1)-ALPHA-PHOSPHORIBOSYLTRANSFERASE; COMPND 6 EC: 2.4.2.21; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: COBT, STM2016; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JE2017; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCOBT19 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.CHAN,S.A.NEWMISTER,K.C.TAYLOR,K.R.CLAAS,I.RAYMENT,J.C.ESCALANTE- AUTHOR 2 SEMERENA REVDAT 1 12-MAR-14 4KQI 0 JRNL AUTH C.H.CHAN,S.A.NEWMISTER,K.TALYOR,K.R.CLAAS,I.RAYMENT, JRNL AUTH 2 J.C.ESCALANTE-SEMERENA JRNL TITL DISSECTING COBAMIDE DIVERSITY THROUGH STRUCTURAL AND JRNL TITL 2 FUNCTIONAL ANALYSES OF THE BASE-ACTIVATING COBT ENZYME OF JRNL TITL 3 SALMONELLA ENTERICA. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1840 464 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 24121107 JRNL DOI 10.1016/J.BBAGEN.2013.09.038 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : -0.93000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2537 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2523 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3464 ; 2.839 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5793 ; 1.142 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 5.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;31.670 ;23.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;14.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2899 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4KQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-13. REMARK 100 THE RCSB ID CODE IS RCSB079667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 78.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1500, 0.1 M MES, 0.05 M REMARK 280 LITHIUM SULFATE, 2.5% ETHYLENE GLYCOL, PH 6.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.63900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.72200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.63900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.72200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 71.27800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 343 REMARK 465 SER A 344 REMARK 465 ASN A 345 REMARK 465 ILE A 346 REMARK 465 VAL A 347 REMARK 465 LEU A 348 REMARK 465 PRO A 349 REMARK 465 GLU A 350 REMARK 465 GLY A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ASN A 354 REMARK 465 ALA A 355 REMARK 465 THR A 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 82 O HOH A 700 1.90 REMARK 500 CA GLY A 316 O HOH A 649 1.93 REMARK 500 C1 EDO A 402 O HOH A 713 1.94 REMARK 500 OD1 ASP A 27 O HOH A 577 1.96 REMARK 500 SD MET A 313 O HOH A 636 2.03 REMARK 500 CG MET A 313 O HOH A 636 2.04 REMARK 500 CG LEU A 36 O HOH A 682 2.11 REMARK 500 CD2 LEU A 36 O HOH A 682 2.11 REMARK 500 OE2 GLU A 174 O HOH A 634 2.13 REMARK 500 O HOH A 696 O HOH A 697 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 658 O HOH A 658 2565 1.05 REMARK 500 OG SER A 35 O HOH A 678 2565 1.95 REMARK 500 OE2 GLU A 154 O HOH A 665 3845 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 317 N ALA A 317 CA -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 MET A 66 CB - CG - SD ANGL. DEV. = -21.8 DEGREES REMARK 500 MET A 66 CG - SD - CE ANGL. DEV. = -33.1 DEGREES REMARK 500 LYS A 109 CD - CE - NZ ANGL. DEV. = 25.4 DEGREES REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 TYR A 158 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 242 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 268 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 MET A 305 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 GLU A 329 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 67.33 -66.69 REMARK 500 ASP A 263 -111.37 -113.34 REMARK 500 SER A 288 -80.66 -107.35 REMARK 500 ARG A 314 38.04 -157.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 165 23.3 L L OUTSIDE RANGE REMARK 500 ASN A 179 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RBZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIO A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COBT E317A REMARK 900 RELATED ID: 4KQF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COBT E174A COMPLEXED WITH ADENINE REMARK 900 RELATED ID: 4KQG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COBT E174A COMPLEXED WITH DMB REMARK 900 RELATED ID: 1D0V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD TYPE COBT COMPLEXED WITH ITS REMARK 900 REACTION PRODUCTS REMARK 900 RELATED ID: 4KQJ RELATED DB: PDB REMARK 900 RELATED ID: 4KQK RELATED DB: PDB DBREF 4KQI A 1 356 UNP Q05603 COBT_SALTY 1 356 SEQADV 4KQI ALA A 317 UNP Q05603 GLU 317 ENGINEERED MUTATION SEQRES 1 A 356 MET GLN THR LEU HIS ALA LEU LEU ARG ASP ILE PRO ALA SEQRES 2 A 356 PRO ASP ALA GLU ALA MET ALA ARG ALA GLN GLN HIS ILE SEQRES 3 A 356 ASP GLY LEU LEU LYS PRO PRO GLY SER LEU GLY ARG LEU SEQRES 4 A 356 GLU THR LEU ALA VAL GLN LEU ALA GLY MET PRO GLY LEU SEQRES 5 A 356 ASN GLY THR PRO GLN VAL GLY GLU LYS ALA VAL LEU VAL SEQRES 6 A 356 MET CYS ALA ASP HIS GLY VAL TRP ASP GLU GLY VAL ALA SEQRES 7 A 356 VAL SER PRO LYS ILE VAL THR ALA ILE GLN ALA ALA ASN SEQRES 8 A 356 MET THR ARG GLY THR THR GLY VAL CYS VAL LEU ALA ALA SEQRES 9 A 356 GLN ALA GLY ALA LYS VAL HIS VAL ILE ASP VAL GLY ILE SEQRES 10 A 356 ASP ALA GLU PRO ILE PRO GLY VAL VAL ASN MET ARG VAL SEQRES 11 A 356 ALA ARG GLY CYS GLY ASN ILE ALA VAL GLY PRO ALA MET SEQRES 12 A 356 SER ARG LEU GLN ALA GLU ALA LEU LEU LEU GLU VAL SER SEQRES 13 A 356 ARG TYR THR CYS ASP LEU ALA GLN ARG GLY VAL THR LEU SEQRES 14 A 356 PHE GLY VAL GLY GLU LEU GLY MET ALA ASN THR THR PRO SEQRES 15 A 356 ALA ALA ALA MET VAL SER VAL PHE THR GLY SER ASP ALA SEQRES 16 A 356 LYS GLU VAL VAL GLY ILE GLY ALA ASN LEU PRO PRO SER SEQRES 17 A 356 ARG ILE ASP ASN LYS VAL ASP VAL VAL ARG ARG ALA ILE SEQRES 18 A 356 ALA ILE ASN GLN PRO ASN PRO ARG ASP GLY ILE ASP VAL SEQRES 19 A 356 LEU SER LYS VAL GLY GLY PHE ASP LEU VAL GLY MET THR SEQRES 20 A 356 GLY VAL MET LEU GLY ALA ALA ARG CYS GLY LEU PRO VAL SEQRES 21 A 356 LEU LEU ASP GLY PHE LEU SER TYR SER ALA ALA LEU ALA SEQRES 22 A 356 ALA CYS GLN ILE ALA PRO ALA VAL ARG PRO TYR LEU ILE SEQRES 23 A 356 PRO SER HIS PHE SER ALA GLU LYS GLY ALA ARG ILE ALA SEQRES 24 A 356 LEU ALA HIS LEU SER MET GLU PRO TYR LEU HIS MET ALA SEQRES 25 A 356 MET ARG LEU GLY ALA GLY SER GLY ALA ALA LEU ALA MET SEQRES 26 A 356 PRO ILE VAL GLU ALA ALA CYS ALA MET PHE HIS ASN MET SEQRES 27 A 356 GLY GLU LEU ALA ALA SER ASN ILE VAL LEU PRO GLU GLY SEQRES 28 A 356 ASN ALA ASN ALA THR HET RBZ A 401 24 HET EDO A 402 4 HET NIO A 403 9 HETNAM RBZ ALPHA-RIBAZOLE-5'-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM NIO NICOTINIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 RBZ C14 H19 N2 O7 P FORMUL 3 EDO C2 H6 O2 FORMUL 4 NIO C6 H5 N O2 FORMUL 5 HOH *231(H2 O) HELIX 1 1 THR A 3 ASP A 10 1 8 HELIX 2 2 ASP A 15 GLY A 28 1 14 HELIX 3 3 LEU A 36 GLY A 48 1 13 HELIX 4 4 MET A 49 ASN A 53 5 5 HELIX 5 5 HIS A 70 GLY A 76 5 7 HELIX 6 6 ILE A 83 ARG A 94 1 12 HELIX 7 7 THR A 97 GLY A 107 1 11 HELIX 8 8 SER A 144 ARG A 165 1 22 HELIX 9 9 ASN A 179 GLY A 192 1 14 HELIX 10 10 ASP A 194 VAL A 199 1 6 HELIX 11 11 PRO A 206 SER A 208 5 3 HELIX 12 12 ARG A 209 GLN A 225 1 17 HELIX 13 13 ASP A 230 GLY A 239 1 10 HELIX 14 14 GLY A 240 CYS A 256 1 17 HELIX 15 15 GLY A 264 ALA A 278 1 15 HELIX 16 16 PRO A 279 PRO A 283 5 5 HELIX 17 17 GLY A 295 LEU A 303 1 9 HELIX 18 18 GLY A 318 MET A 338 1 21 SHEET 1 A 6 VAL A 126 ASN A 127 0 SHEET 2 A 6 LYS A 109 GLY A 116 1 N ASP A 114 O VAL A 126 SHEET 3 A 6 GLU A 60 ALA A 68 1 N CYS A 67 O ILE A 113 SHEET 4 A 6 VAL A 167 LEU A 175 1 O GLY A 171 N LEU A 64 SHEET 5 A 6 VAL A 260 LEU A 261 1 O LEU A 261 N PHE A 170 SHEET 6 A 6 LEU A 285 ILE A 286 1 O ILE A 286 N VAL A 260 SSBOND 1 CYS A 160 CYS A 256 1555 1555 1.98 SITE 1 AC1 21 PRO A 32 ALA A 78 SER A 80 GLU A 174 SITE 2 AC1 21 LEU A 175 GLY A 176 MET A 177 ALA A 178 SITE 3 AC1 21 ASN A 179 THR A 180 GLY A 202 ALA A 203 SITE 4 AC1 21 LEU A 315 NIO A 403 HOH A 513 HOH A 534 SITE 5 AC1 21 HOH A 544 HOH A 583 HOH A 647 HOH A 649 SITE 6 AC1 21 HOH A 680 SITE 1 AC2 5 CYS A 100 ALA A 108 LYS A 109 VAL A 110 SITE 2 AC2 5 HOH A 713 SITE 1 AC3 13 GLY A 202 GLY A 264 PHE A 265 LEU A 266 SITE 2 AC3 13 SER A 291 GLU A 293 ARG A 314 GLY A 316 SITE 3 AC3 13 RBZ A 401 HOH A 633 HOH A 635 HOH A 649 SITE 4 AC3 13 HOH A 680 CRYST1 46.753 71.278 89.444 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011180 0.00000