HEADER TRANSFERASE 15-MAY-13 4KQS
TITLE CRYSTAL STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE MUTANT (Y204A)
TITLE 2 COMPLEXED WITH MG, RISEDRONATE AND ISOPENTENYL PYROPHOSPHATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 67-419;
COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE,
COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE,
COMPND 7 GERANYLTRANSTRANSFERASE;
COMPND 8 EC: 2.5.1.10, 2.5.1.1;
COMPND 9 ENGINEERED: YES;
COMPND 10 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: FDPS, FPS, KIAA1293;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE
KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS,
KEYWDS 2 TRANSFERASE, DIMETHYLALLYL PYROPHOSPHATE, ISOPRENOID PATHWAY,
KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES
EXPDTA X-RAY DIFFRACTION
AUTHOR B.L.BARNETT,M.K.TSOUMPRA,J.R.C.MUNIZ
REVDAT 2 20-SEP-23 4KQS 1 REMARK SEQADV HETSYN LINK
REVDAT 1 30-APR-14 4KQS 0
JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.KWAASI,
JRNL AUTH 2 K.L.KAVANAGH,A.G.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,
JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD
JRNL TITL CRYSTAL STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE MUTANT
JRNL TITL 2 (Y204A) COMPLEXED WITH MG, RISEDRONATE AND ISOPENTENYL
JRNL TITL 3 PYROPHOSPHATE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.97 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.13
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 29970
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.172
REMARK 3 R VALUE (WORKING SET) : 0.170
REMARK 3 FREE R VALUE : 0.205
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080
REMARK 3 FREE R VALUE TEST SET COUNT : 1523
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 15
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2900
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2232
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2728
REMARK 3 BIN R VALUE (WORKING SET) : 0.2213
REMARK 3 BIN FREE R VALUE : 0.2529
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.93
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2719
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 34
REMARK 3 SOLVENT ATOMS : 418
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 30.14
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.07
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.56650
REMARK 3 B22 (A**2) : 2.56650
REMARK 3 B33 (A**2) : -5.13300
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2844 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3866 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1360 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 410 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2844 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 361 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3873 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 0.89
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.76
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|9 - 29}
REMARK 3 ORIGIN FOR THE GROUP (A): 29.9411 0.2033 26.6859
REMARK 3 T TENSOR
REMARK 3 T11: 0.0218 T22: -0.0746
REMARK 3 T33: -0.0265 T12: -0.0414
REMARK 3 T13: -0.0209 T23: -0.0515
REMARK 3 L TENSOR
REMARK 3 L11: 2.3409 L22: 3.4905
REMARK 3 L33: 0.2351 L12: 1.8999
REMARK 3 L13: 1.4529 L23: 1.4251
REMARK 3 S TENSOR
REMARK 3 S11: -0.0748 S12: -0.1470 S13: 0.1396
REMARK 3 S21: 0.0916 S22: 0.1362 S23: -0.0776
REMARK 3 S31: -0.1623 S32: 0.3060 S33: -0.0614
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|30 - 52}
REMARK 3 ORIGIN FOR THE GROUP (A): 26.3074 -16.5326 32.2101
REMARK 3 T TENSOR
REMARK 3 T11: -0.0082 T22: -0.0420
REMARK 3 T33: -0.0399 T12: 0.0084
REMARK 3 T13: -0.0477 T23: -0.0007
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 1.5826
REMARK 3 L33: 2.3859 L12: -0.5541
REMARK 3 L13: -0.6821 L23: 1.2778
REMARK 3 S TENSOR
REMARK 3 S11: -0.0328 S12: -0.2108 S13: 0.1442
REMARK 3 S21: 0.1602 S22: -0.0021 S23: -0.0118
REMARK 3 S31: -0.0068 S32: -0.0122 S33: 0.0349
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|53 - 78}
REMARK 3 ORIGIN FOR THE GROUP (A): 25.7007 6.3280 16.9364
REMARK 3 T TENSOR
REMARK 3 T11: 0.0948 T22: -0.0441
REMARK 3 T33: 0.0542 T12: -0.0187
REMARK 3 T13: 0.0472 T23: 0.0081
REMARK 3 L TENSOR
REMARK 3 L11: 0.5245 L22: 2.8860
REMARK 3 L33: 0.7536 L12: -0.4572
REMARK 3 L13: 0.4973 L23: 0.2585
REMARK 3 S TENSOR
REMARK 3 S11: 0.0230 S12: 0.0408 S13: -0.0394
REMARK 3 S21: 0.0660 S22: -0.0799 S23: -0.0816
REMARK 3 S31: -0.1708 S32: 0.0254 S33: 0.0569
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|79 - 176}
REMARK 3 ORIGIN FOR THE GROUP (A): 23.7190 -11.8610 17.6189
REMARK 3 T TENSOR
REMARK 3 T11: -0.0392 T22: -0.0400
REMARK 3 T33: -0.0271 T12: -0.0158
REMARK 3 T13: -0.0024 T23: 0.0138
REMARK 3 L TENSOR
REMARK 3 L11: 0.5701 L22: 1.4776
REMARK 3 L33: 0.5126 L12: -0.2214
REMARK 3 L13: -0.1189 L23: -0.0311
REMARK 3 S TENSOR
REMARK 3 S11: -0.0002 S12: -0.0427 S13: 0.0201
REMARK 3 S21: 0.1086 S22: 0.0072 S23: -0.0924
REMARK 3 S31: -0.0870 S32: -0.0144 S33: -0.0070
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|177 - 268}
REMARK 3 ORIGIN FOR THE GROUP (A): 30.6460 -10.7744 2.2449
REMARK 3 T TENSOR
REMARK 3 T11: 0.0024 T22: -0.0481
REMARK 3 T33: 0.0195 T12: -0.0038
REMARK 3 T13: 0.0528 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 0.7750 L22: 1.4822
REMARK 3 L33: 0.6331 L12: -0.8037
REMARK 3 L13: -0.2400 L23: 0.2178
REMARK 3 S TENSOR
REMARK 3 S11: 0.0926 S12: 0.0933 S13: 0.0961
REMARK 3 S21: -0.2594 S22: -0.0461 S23: -0.1524
REMARK 3 S31: -0.1320 S32: 0.0039 S33: -0.0464
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: {A|269 - 294}
REMARK 3 ORIGIN FOR THE GROUP (A): 43.7724 -23.2802 -7.8651
REMARK 3 T TENSOR
REMARK 3 T11: 0.0177 T22: -0.0867
REMARK 3 T33: -0.0204 T12: 0.0291
REMARK 3 T13: 0.0949 T23: -0.0139
REMARK 3 L TENSOR
REMARK 3 L11: 2.2377 L22: 0.5148
REMARK 3 L33: 2.1896 L12: 0.1009
REMARK 3 L13: 0.0122 L23: -0.4526
REMARK 3 S TENSOR
REMARK 3 S11: 0.1450 S12: 0.1313 S13: 0.0499
REMARK 3 S21: -0.2949 S22: 0.1088 S23: -0.2585
REMARK 3 S31: 0.0800 S32: 0.1330 S33: -0.2538
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: {A|295 - 332}
REMARK 3 ORIGIN FOR THE GROUP (A): 41.8101 -7.9061 -4.4486
REMARK 3 T TENSOR
REMARK 3 T11: 0.0401 T22: -0.0580
REMARK 3 T33: 0.0730 T12: -0.0078
REMARK 3 T13: 0.1388 T23: 0.0354
REMARK 3 L TENSOR
REMARK 3 L11: 0.0038 L22: 0.0895
REMARK 3 L33: 0.3716 L12: 0.0440
REMARK 3 L13: 0.6116 L23: -0.1229
REMARK 3 S TENSOR
REMARK 3 S11: -0.0344 S12: 0.0551 S13: 0.0712
REMARK 3 S21: -0.1680 S22: 0.1157 S23: -0.2626
REMARK 3 S31: -0.1365 S32: 0.1456 S33: -0.0813
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: {A|333 - 353}
REMARK 3 ORIGIN FOR THE GROUP (A): 32.3205 5.1595 5.2863
REMARK 3 T TENSOR
REMARK 3 T11: 0.0285 T22: -0.0417
REMARK 3 T33: -0.0227 T12: -0.0221
REMARK 3 T13: 0.0305 T23: 0.0060
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 2.3777
REMARK 3 L33: 0.0165 L12: 0.0736
REMARK 3 L13: -2.0957 L23: 0.8577
REMARK 3 S TENSOR
REMARK 3 S11: 0.0036 S12: 0.0396 S13: -0.0033
REMARK 3 S21: -0.0260 S22: -0.0099 S23: -0.1490
REMARK 3 S31: -0.1872 S32: 0.1165 S33: 0.0063
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4KQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-13.
REMARK 100 THE DEPOSITION ID IS D_1000079677.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-FEB-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30003
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970
REMARK 200 RESOLUTION RANGE LOW (A) : 35.290
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 9.100
REMARK 200 R MERGE (I) : 0.16300
REMARK 200 R SYM (I) : 0.16300
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3CP6
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.53
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG6000, 10% ETHYLENE
REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.05000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.79500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.79500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.52500
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.79500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.79500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.57500
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.79500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.79500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.52500
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.79500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.79500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.57500
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.05000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 26580 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.05000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 576 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -21
REMARK 465 GLY A -20
REMARK 465 SER A -19
REMARK 465 SER A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 SER A -11
REMARK 465 SER A -10
REMARK 465 GLY A -9
REMARK 465 ARG A -8
REMARK 465 GLU A -7
REMARK 465 ASN A -6
REMARK 465 LEU A -5
REMARK 465 TYR A -4
REMARK 465 PHE A -3
REMARK 465 GLN A -2
REMARK 465 GLY A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 ASN A 2
REMARK 465 GLY A 3
REMARK 465 ASP A 4
REMARK 465 GLN A 5
REMARK 465 ASN A 6
REMARK 465 SER A 7
REMARK 465 ASP A 8
REMARK 465 ASP A 31
REMARK 465 GLU A 32
REMARK 465 MET A 33
REMARK 465 GLY A 34
REMARK 465 HIS A 35
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 9 CG1 CG2
REMARK 470 GLU A 13 CG CD OE1 OE2
REMARK 470 GLN A 180 CG CD OE1 NE2
REMARK 470 GLU A 222 CG CD OE1 OE2
REMARK 470 LYS A 223 CG CD CE NZ
REMARK 470 LEU A 315 CG CD1 CD2
REMARK 470 ARG A 351 CD NE CZ NH1 NH2
REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 124 -71.57 -101.12
REMARK 500 ALA A 178 59.88 -118.84
REMARK 500 THR A 201 -52.25 -130.24
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 401 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 103 OD1
REMARK 620 2 ASP A 107 OD2 86.5
REMARK 620 3 RIS A 405 O15 95.6 80.4
REMARK 620 4 HOH A 535 O 89.5 173.6 95.0
REMARK 620 5 HOH A 536 O 175.7 91.9 88.1 92.4
REMARK 620 6 HOH A 538 O 87.6 97.2 175.9 87.6 88.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 402 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 103 OD2
REMARK 620 2 ASP A 107 OD2 88.5
REMARK 620 3 RIS A 405 O15 92.1 79.0
REMARK 620 4 RIS A 405 O12 93.0 172.1 93.1
REMARK 620 5 HOH A 505 O 174.8 89.5 92.3 89.6
REMARK 620 6 HOH A 506 O 79.0 101.8 171.0 86.2 96.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 243 OD2
REMARK 620 2 RIS A 405 O11 89.5
REMARK 620 3 RIS A 405 O16 94.7 95.7
REMARK 620 4 HOH A 501 O 86.4 175.2 87.1
REMARK 620 5 HOH A 502 O 90.6 83.5 174.7 94.0
REMARK 620 6 HOH A 503 O 173.1 94.7 90.4 89.1 84.4
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 405
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4KFA RELATED DB: PDB
REMARK 900 RELATED ID: 4KPD RELATED DB: PDB
REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB
REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB
REMARK 900 RELATED ID: 4KQU RELATED DB: PDB
DBREF 4KQS A 1 353 UNP P14324 FPPS_HUMAN 67 419
SEQADV 4KQS MET A -21 UNP P14324 EXPRESSION TAG
SEQADV 4KQS GLY A -20 UNP P14324 EXPRESSION TAG
SEQADV 4KQS SER A -19 UNP P14324 EXPRESSION TAG
SEQADV 4KQS SER A -18 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -17 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -16 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -15 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -14 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -13 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A -12 UNP P14324 EXPRESSION TAG
SEQADV 4KQS SER A -11 UNP P14324 EXPRESSION TAG
SEQADV 4KQS SER A -10 UNP P14324 EXPRESSION TAG
SEQADV 4KQS GLY A -9 UNP P14324 EXPRESSION TAG
SEQADV 4KQS ARG A -8 UNP P14324 EXPRESSION TAG
SEQADV 4KQS GLU A -7 UNP P14324 EXPRESSION TAG
SEQADV 4KQS ASN A -6 UNP P14324 EXPRESSION TAG
SEQADV 4KQS LEU A -5 UNP P14324 EXPRESSION TAG
SEQADV 4KQS TYR A -4 UNP P14324 EXPRESSION TAG
SEQADV 4KQS PHE A -3 UNP P14324 EXPRESSION TAG
SEQADV 4KQS GLN A -2 UNP P14324 EXPRESSION TAG
SEQADV 4KQS GLY A -1 UNP P14324 EXPRESSION TAG
SEQADV 4KQS HIS A 0 UNP P14324 EXPRESSION TAG
SEQADV 4KQS ALA A 204 UNP P14324 TYR 270 ENGINEERED MUTATION
SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP
SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE
SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU
SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA
SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY
SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG
SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU
SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU
SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER
SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS
SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU
SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS
SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE
SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU
SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL
SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR
SEQRES 18 A 375 LYS THR ALA PHE ALA SER PHE TYR LEU PRO ILE ALA ALA
SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS
SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE
SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP
SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP
SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG
SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR
SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA
SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN
SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE
SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU
SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS
HET MG A 401 1
HET MG A 402 1
HET MG A 403 1
HET IPE A 404 14
HET RIS A 405 17
HETNAM MG MAGNESIUM ION
HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID
HETSYN IPE ISOPENTENYL PYROPHOSPHATE
HETSYN RIS RISEDRONATE
FORMUL 2 MG 3(MG 2+)
FORMUL 5 IPE C5 H12 O7 P2
FORMUL 6 RIS C7 H11 N O7 P2
FORMUL 7 HOH *418(H2 O)
HELIX 1 1 VAL A 9 GLN A 19 1 11
HELIX 2 2 HIS A 20 THR A 29 1 10
HELIX 3 3 GLU A 30 GLU A 30 5 1
HELIX 4 4 PRO A 36 GLU A 37 5 2
HELIX 5 5 ILE A 38 ALA A 53 1 16
HELIX 6 6 TYR A 58 VAL A 72 1 15
HELIX 7 7 GLU A 73 GLN A 77 5 5
HELIX 8 8 ASP A 78 ASP A 107 1 30
HELIX 9 9 TRP A 118 LYS A 121 5 4
HELIX 10 10 VAL A 124 LEU A 126 5 3
HELIX 11 11 ASP A 127 ARG A 148 1 22
HELIX 12 12 TYR A 152 ALA A 178 1 27
HELIX 13 13 ASP A 184 PHE A 188 5 5
HELIX 14 14 THR A 189 THR A 201 1 13
HELIX 15 15 THR A 201 PHE A 206 1 6
HELIX 16 16 PHE A 206 ALA A 217 1 12
HELIX 17 17 GLY A 221 GLY A 250 1 30
HELIX 18 18 ASP A 251 GLY A 256 1 6
HELIX 19 19 SER A 268 ALA A 278 1 11
HELIX 20 20 THR A 279 TYR A 290 1 12
HELIX 21 21 GLU A 294 LEU A 308 1 15
HELIX 22 22 ASP A 309 ALA A 333 1 25
HELIX 23 23 PRO A 337 TYR A 349 1 13
SHEET 1 A 2 THR A 111 ARG A 112 0
SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112
LINK OD1 ASP A 103 MG MG A 401 1555 1555 2.03
LINK OD2 ASP A 103 MG MG A 402 1555 1555 2.12
LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.14
LINK OD2 ASP A 107 MG MG A 402 1555 1555 2.15
LINK OD2 ASP A 243 MG MG A 403 1555 1555 2.23
LINK MG MG A 401 O15 RIS A 405 1555 1555 2.07
LINK MG MG A 401 O HOH A 535 1555 1555 2.00
LINK MG MG A 401 O HOH A 536 1555 1555 2.19
LINK MG MG A 401 O HOH A 538 1555 1555 2.08
LINK MG MG A 402 O15 RIS A 405 1555 1555 2.12
LINK MG MG A 402 O12 RIS A 405 1555 1555 2.13
LINK MG MG A 402 O HOH A 505 1555 1555 2.09
LINK MG MG A 402 O HOH A 506 1555 1555 2.07
LINK MG MG A 403 O11 RIS A 405 1555 1555 2.00
LINK MG MG A 403 O16 RIS A 405 1555 1555 2.16
LINK MG MG A 403 O HOH A 501 1555 1555 2.08
LINK MG MG A 403 O HOH A 502 1555 1555 2.19
LINK MG MG A 403 O HOH A 503 1555 1555 2.20
CISPEP 1 ALA A 334 PRO A 335 0 6.41
SITE 1 AC1 7 ASP A 103 ASP A 107 MG A 402 RIS A 405
SITE 2 AC1 7 HOH A 535 HOH A 536 HOH A 538
SITE 1 AC2 6 ASP A 103 ASP A 107 MG A 401 RIS A 405
SITE 2 AC2 6 HOH A 505 HOH A 506
SITE 1 AC3 5 ASP A 243 RIS A 405 HOH A 501 HOH A 502
SITE 2 AC3 5 HOH A 503
SITE 1 AC4 15 GLY A 56 LYS A 57 ARG A 60 GLN A 96
SITE 2 AC4 15 ARG A 113 SER A 205 PHE A 239 GLN A 240
SITE 3 AC4 15 RIS A 405 HOH A 514 HOH A 515 HOH A 518
SITE 4 AC4 15 HOH A 653 HOH A 803 HOH A 895
SITE 1 AC5 21 ASP A 103 ASP A 107 ARG A 112 GLN A 171
SITE 2 AC5 21 LYS A 200 THR A 201 ASP A 243 LYS A 257
SITE 3 AC5 21 MG A 401 MG A 402 MG A 403 IPE A 404
SITE 4 AC5 21 HOH A 501 HOH A 502 HOH A 503 HOH A 505
SITE 5 AC5 21 HOH A 506 HOH A 508 HOH A 535 HOH A 536
SITE 6 AC5 21 HOH A 537
CRYST1 111.590 111.590 66.100 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008961 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008961 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015129 0.00000