HEADER TRANSFERASE 15-MAY-13 4KQU TITLE CRYSTAL STRUCTURE OF FARNESYL SYNTHASE MUTANT (Y204A) COMPLEXED WITH TITLE 2 MG, ALENDRONATE AND ISOPENTENYL PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, DIMETHYLALLYL PYROPHOSPHATE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR B.L.BARNETT,M.K.TSOUMPRA,J.R.C.MUNIZ,R.L.WALTER REVDAT 2 20-SEP-23 4KQU 1 REMARK SEQADV HETSYN LINK REVDAT 1 30-APR-14 4KQU 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.KWAASI, JRNL AUTH 2 K.L.KAVANAGH,A.G.EVDOKIMOV,R.L.WALTER,F.H.EBETINO, JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL CRYSTAL STRUCTURE OF FARNESYL SYNTHASE MUTANT (Y204A) JRNL TITL 2 COMPLEXED WITH MG, ALENDRONATE AND ISOPENTENYL PYROPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2908 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2100 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2777 REMARK 3 BIN R VALUE (WORKING SET) : 0.2082 REMARK 3 BIN FREE R VALUE : 0.2463 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.43210 REMARK 3 B22 (A**2) : 3.43210 REMARK 3 B33 (A**2) : -6.86420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.245 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.166 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2807 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3815 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1330 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 399 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2807 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 358 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3611 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.76 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|10 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): 29.7974 0.2614 26.7985 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: -0.1366 REMARK 3 T33: -0.0314 T12: -0.0407 REMARK 3 T13: -0.0365 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 1.7475 L22: 2.2920 REMARK 3 L33: 3.7239 L12: 0.4969 REMARK 3 L13: 1.3400 L23: 1.6592 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.1681 S13: 0.0678 REMARK 3 S21: 0.0915 S22: 0.2139 S23: -0.0449 REMARK 3 S31: -0.2879 S32: 0.3217 S33: -0.1204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|29 - 52} REMARK 3 ORIGIN FOR THE GROUP (A): 25.3782 -15.9303 32.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: -0.0733 REMARK 3 T33: 0.0021 T12: -0.0143 REMARK 3 T13: -0.0538 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.1993 REMARK 3 L33: 3.3628 L12: -0.5902 REMARK 3 L13: -0.3038 L23: 1.3227 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.2432 S13: 0.2054 REMARK 3 S21: 0.2948 S22: 0.0118 S23: -0.0740 REMARK 3 S31: -0.0283 S32: -0.1621 S33: -0.0148 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|53 - 78} REMARK 3 ORIGIN FOR THE GROUP (A): 25.6530 6.0682 16.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: -0.0825 REMARK 3 T33: 0.1110 T12: -0.0162 REMARK 3 T13: 0.0445 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 4.5765 REMARK 3 L33: 0.5632 L12: 0.0492 REMARK 3 L13: 1.1401 L23: -0.7011 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0028 S13: 0.1741 REMARK 3 S21: 0.1185 S22: 0.0046 S23: -0.0542 REMARK 3 S31: -0.2464 S32: -0.0013 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - 152} REMARK 3 ORIGIN FOR THE GROUP (A): 25.6518 -11.7081 20.5900 REMARK 3 T TENSOR REMARK 3 T11: -0.0597 T22: -0.0723 REMARK 3 T33: -0.0144 T12: -0.0323 REMARK 3 T13: -0.0236 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.3435 L22: 2.3640 REMARK 3 L33: 1.0042 L12: -0.3720 REMARK 3 L13: 0.0919 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.0200 S13: -0.0163 REMARK 3 S21: 0.2815 S22: 0.0419 S23: -0.2589 REMARK 3 S31: -0.0989 S32: 0.0048 S33: -0.0303 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|153 - 176} REMARK 3 ORIGIN FOR THE GROUP (A): 18.5062 -12.6235 8.7223 REMARK 3 T TENSOR REMARK 3 T11: -0.0323 T22: -0.0474 REMARK 3 T33: 0.0005 T12: -0.0347 REMARK 3 T13: 0.0106 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.3805 L22: 2.3099 REMARK 3 L33: 1.2182 L12: -0.4791 REMARK 3 L13: -0.2191 L23: 0.8077 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.0718 S13: 0.0859 REMARK 3 S21: -0.0220 S22: 0.0034 S23: 0.0108 REMARK 3 S31: -0.1419 S32: -0.0486 S33: -0.0194 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|177 - 206} REMARK 3 ORIGIN FOR THE GROUP (A): 29.8624 -17.3608 -2.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: -0.0582 REMARK 3 T33: 0.0412 T12: -0.0117 REMARK 3 T13: 0.0623 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.2158 L22: 1.9591 REMARK 3 L33: 1.1908 L12: -0.2041 REMARK 3 L13: -0.5284 L23: 0.7553 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.3117 S13: -0.1925 REMARK 3 S21: -0.2252 S22: 0.0071 S23: -0.0904 REMARK 3 S31: -0.0005 S32: -0.1012 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|207 - 249} REMARK 3 ORIGIN FOR THE GROUP (A): 26.5128 -2.5643 3.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: -0.1081 REMARK 3 T33: -0.0112 T12: -0.0011 REMARK 3 T13: 0.0298 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 1.1859 L22: 2.5267 REMARK 3 L33: 0.9591 L12: -0.6310 REMARK 3 L13: -0.9568 L23: 0.7895 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.1096 S13: 0.2831 REMARK 3 S21: -0.1805 S22: 0.0727 S23: -0.2469 REMARK 3 S31: -0.1358 S32: -0.0697 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|250 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): 43.1450 -21.0896 -2.3910 REMARK 3 T TENSOR REMARK 3 T11: -0.0256 T22: -0.0690 REMARK 3 T33: 0.0798 T12: -0.0099 REMARK 3 T13: 0.0709 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.9970 L22: 1.3909 REMARK 3 L33: 1.2767 L12: -1.4068 REMARK 3 L13: -1.1431 L23: 0.6654 REMARK 3 S TENSOR REMARK 3 S11: 0.2004 S12: 0.1883 S13: 0.1664 REMARK 3 S21: -0.3327 S22: 0.0436 S23: -0.5441 REMARK 3 S31: -0.1122 S32: 0.1748 S33: -0.2441 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|295 - 332} REMARK 3 ORIGIN FOR THE GROUP (A): 41.8819 -7.8650 -4.5014 REMARK 3 T TENSOR REMARK 3 T11: -0.0509 T22: -0.1179 REMARK 3 T33: 0.1535 T12: -0.0379 REMARK 3 T13: 0.1371 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.9507 REMARK 3 L33: 0.8673 L12: -0.2821 REMARK 3 L13: 0.8363 L23: -0.1535 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.0923 S13: -0.0060 REMARK 3 S21: -0.2245 S22: 0.1996 S23: -0.4247 REMARK 3 S31: -0.1112 S32: 0.1689 S33: -0.0774 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|333 - 353} REMARK 3 ORIGIN FOR THE GROUP (A): 32.4911 5.0231 5.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: -0.0853 REMARK 3 T33: 0.0155 T12: -0.0143 REMARK 3 T13: 0.0122 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.2435 L22: 2.7183 REMARK 3 L33: 0.5670 L12: 2.9104 REMARK 3 L13: 0.1027 L23: -0.7271 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0736 S13: -0.0413 REMARK 3 S21: -0.1312 S22: -0.0418 S23: -0.1619 REMARK 3 S31: -0.3741 S32: 0.0433 S33: 0.0368 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26175 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.63250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.89750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.63250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.89750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.26500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 76 NZ REMARK 470 ARG A 148 NE CZ NH1 NH2 REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LYS A 347 CD CE NZ REMARK 470 ARG A 351 CD NE CZ NH1 NH2 REMARK 470 ARG A 352 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -74.59 -99.33 REMARK 500 ALA A 178 56.07 -114.17 REMARK 500 THR A 201 -57.37 -126.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 89.1 REMARK 620 3 AHD A 405 O11 96.1 88.8 REMARK 620 4 AHD A 405 O15 90.1 176.3 94.8 REMARK 620 5 HOH A 504 O 77.0 94.1 172.5 82.3 REMARK 620 6 HOH A 505 O 166.6 91.0 97.2 89.0 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 86.7 REMARK 620 3 AHD A 405 O11 100.6 81.5 REMARK 620 4 HOH A 506 O 177.1 94.2 82.2 REMARK 620 5 HOH A 507 O 92.2 97.1 166.9 85.0 REMARK 620 6 HOH A 508 O 95.0 174.3 92.8 84.3 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 AHD A 405 O16 94.5 REMARK 620 3 AHD A 405 O12 95.1 93.2 REMARK 620 4 HOH A 501 O 91.4 172.2 91.3 REMARK 620 5 HOH A 502 O 90.9 84.8 173.8 90.1 REMARK 620 6 HOH A 503 O 170.5 91.4 92.0 82.1 82.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AHD A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 RELATED ID: 4KPD RELATED DB: PDB REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4KQS RELATED DB: PDB DBREF 4KQU A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4KQU MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4KQU GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4KQU SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4KQU SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4KQU SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4KQU SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4KQU GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4KQU ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4KQU GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4KQU ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4KQU LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4KQU TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4KQU PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4KQU GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4KQU GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4KQU HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4KQU ALA A 204 UNP P14324 TYR 270 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE ALA SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET IPE A 404 14 HET AHD A 405 14 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM AHD 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN AHD ALENDRONATE; FOSAMAX (TM) FORMUL 2 MG 3(MG 2+) FORMUL 5 IPE C5 H12 O7 P2 FORMUL 6 AHD C4 H9 N O7 P2 4- FORMUL 7 HOH *209(H2 O) HELIX 1 1 TYR A 10 GLN A 19 1 10 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 ALA A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 GLU A 73 GLN A 77 5 5 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 ASP A 184 PHE A 188 5 5 HELIX 13 13 THR A 189 THR A 201 1 13 HELIX 14 14 THR A 201 PHE A 206 1 6 HELIX 15 15 PHE A 206 ALA A 217 1 12 HELIX 16 16 GLY A 221 GLY A 250 1 30 HELIX 17 17 ASP A 251 GLY A 256 1 6 HELIX 18 18 SER A 268 ALA A 278 1 11 HELIX 19 19 THR A 279 TYR A 290 1 12 HELIX 20 20 GLU A 294 LEU A 308 1 15 HELIX 21 21 ASP A 309 ALA A 333 1 25 HELIX 22 22 PRO A 338 TYR A 349 1 12 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 2.14 LINK OD1 ASP A 103 MG MG A 403 1555 1555 1.97 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.09 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.27 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.13 LINK MG MG A 401 O11 AHD A 405 1555 1555 2.10 LINK MG MG A 401 O15 AHD A 405 1555 1555 2.10 LINK MG MG A 401 O HOH A 504 1555 1555 2.20 LINK MG MG A 401 O HOH A 505 1555 1555 1.94 LINK MG MG A 402 O16 AHD A 405 1555 1555 1.96 LINK MG MG A 402 O12 AHD A 405 1555 1555 2.04 LINK MG MG A 402 O HOH A 501 1555 1555 1.98 LINK MG MG A 402 O HOH A 502 1555 1555 2.27 LINK MG MG A 402 O HOH A 503 1555 1555 2.24 LINK MG MG A 403 O11 AHD A 405 1555 1555 2.22 LINK MG MG A 403 O HOH A 506 1555 1555 2.15 LINK MG MG A 403 O HOH A 507 1555 1555 2.18 LINK MG MG A 403 O HOH A 508 1555 1555 1.94 CISPEP 1 ALA A 334 PRO A 335 0 5.72 SITE 1 AC1 6 ASP A 103 ASP A 107 MG A 403 AHD A 405 SITE 2 AC1 6 HOH A 504 HOH A 505 SITE 1 AC2 5 ASP A 243 AHD A 405 HOH A 501 HOH A 502 SITE 2 AC2 5 HOH A 503 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 AHD A 405 SITE 2 AC3 7 HOH A 506 HOH A 507 HOH A 508 SITE 1 AC4 15 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC4 15 ARG A 113 SER A 205 PHE A 239 GLN A 240 SITE 3 AC4 15 ASP A 243 AHD A 405 HOH A 509 HOH A 510 SITE 4 AC4 15 HOH A 512 HOH A 515 HOH A 516 SITE 1 AC5 21 ASP A 103 ASP A 107 ARG A 112 LYS A 200 SITE 2 AC5 21 THR A 201 GLN A 240 ASP A 243 LYS A 257 SITE 3 AC5 21 MG A 401 MG A 402 MG A 403 IPE A 404 SITE 4 AC5 21 HOH A 501 HOH A 502 HOH A 503 HOH A 504 SITE 5 AC5 21 HOH A 505 HOH A 506 HOH A 508 HOH A 529 SITE 6 AC5 21 HOH A 579 CRYST1 111.500 111.500 66.530 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015031 0.00000