HEADER TRANSPORT PROTEIN 16-MAY-13 4KR5
TITLE CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS GLNP SUBSTRATE BINDING DOMAIN
TITLE 2 2 (SBD2) IN OPEN CONFORMATION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GLUTAMINE ABC TRANSPORTER PERMEASE AND SUBSTRATE BINDING
COMPND 3 PROTEIN PROTEIN;
COMPND 4 CHAIN: A, B;
COMPND 5 FRAGMENT: SUBSTRATE BINDING DOMAIN 2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS;
SOURCE 3 ORGANISM_TAXID: 272623;
SOURCE 4 STRAIN: IL1403;
SOURCE 5 GENE: GLNP, L165, LL1759;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GLUTAMINE/GLUTAMIC ACID BINDING, AMINO ACID TRANSPORT, TRANSPORT
KEYWDS 2 PROTEIN, EXTRACELLULAR
EXPDTA X-RAY DIFFRACTION
AUTHOR A.VUJICIC ZAGAR,A.GUSKOV,G.K.SCHUURMAN-WOLTERS,D.J.SLOTBOOM,B.POOLMAN
REVDAT 3 28-FEB-24 4KR5 1 REMARK SEQADV HETSYN LINK
REVDAT 2 20-NOV-13 4KR5 1 JRNL
REVDAT 1 11-SEP-13 4KR5 0
JRNL AUTH F.FULYANI,G.K.SCHUURMAN-WOLTERS,A.V.ZAGAR,A.GUSKOV,
JRNL AUTH 2 D.J.SLOTBOOM,B.POOLMAN
JRNL TITL FUNCTIONAL DIVERSITY OF TANDEM SUBSTRATE-BINDING DOMAINS IN
JRNL TITL 2 ABC TRANSPORTERS FROM PATHOGENIC BACTERIA.
JRNL REF STRUCTURE V. 21 1879 2013
JRNL REFN ISSN 0969-2126
JRNL PMID 23994008
JRNL DOI 10.1016/J.STR.2013.07.020
REMARK 2
REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 3 NUMBER OF REFLECTIONS : 72554
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.146
REMARK 3 R VALUE (WORKING SET) : 0.143
REMARK 3 FREE R VALUE : 0.186
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040
REMARK 3 FREE R VALUE TEST SET COUNT : 3654
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 1.5197 - 1.5000 0.97 2590 145 0.3116 0.3711
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.880
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 3932
REMARK 3 ANGLE : 1.289 5340
REMARK 3 CHIRALITY : 0.080 565
REMARK 3 PLANARITY : 0.006 687
REMARK 3 DIHEDRAL : 13.650 1516
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4KR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-13.
REMARK 100 THE DEPOSITION ID IS D_1000079690.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-SEP-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.934
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72578
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500
REMARK 200 RESOLUTION RANGE LOW (A) : 19.900
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.04000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.48900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.44
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 6000, 0.1M SODIUM ACETATE
REMARK 280 BUFFER, 200MM MGCL2, PH 5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 281K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.34550
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.56150
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.34550
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.56150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 482
REMARK 465 ASP A 483
REMARK 465 ALA A 484
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OH TYR B 443 O HOH B 703 1.93
REMARK 500 O HOH A 952 O HOH B 605 1.97
REMARK 500 O HOH A 976 O HOH A 977 1.98
REMARK 500 O HOH A 837 O HOH A 944 2.00
REMARK 500 O THR B 433 O HOH B 909 2.03
REMARK 500 O HOH A 978 O HOH B 673 2.03
REMARK 500 O HOH B 892 O HOH B 909 2.04
REMARK 500 O HOH A 976 O HOH B 944 2.04
REMARK 500 O1 PEG A 504 O HOH A 663 2.10
REMARK 500 OG1 THR B 433 O HOH B 909 2.13
REMARK 500 O HOH A 945 O HOH A 954 2.14
REMARK 500 O HOH A 976 O HOH A 978 2.15
REMARK 500 O HOH B 884 O HOH B 909 2.15
REMARK 500 OD1 ASP B 357 O HOH B 926 2.16
REMARK 500 O HOH A 969 O HOH A 970 2.16
REMARK 500 OE1 GLN B 427 O HOH B 908 2.17
REMARK 500 O HOH B 916 O HOH B 927 2.19
REMARK 500 O HOH B 712 O HOH B 939 2.19
REMARK 500 O HOH B 918 O HOH B 919 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 NZ LYS B 394 O HOH B 920 2556 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 269 83.62 -156.79
REMARK 500 SER A 325 51.85 -162.24
REMARK 500 ASP A 440 42.31 -145.32
REMARK 500 SER B 269 88.39 -157.89
REMARK 500 SER B 325 41.73 -162.05
REMARK 500 ASP B 440 39.54 -144.70
REMARK 500 ASN B 452 56.39 34.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PE4 B 506
REMARK 610 P33 B 507
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 501 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A 601 O
REMARK 620 2 HOH A 602 O 92.1
REMARK 620 3 HOH A 603 O 91.2 89.5
REMARK 620 4 HOH B 601 O 179.2 87.2 89.1
REMARK 620 5 HOH B 602 O 92.4 175.5 90.6 88.3
REMARK 620 6 HOH B 603 O 89.2 88.8 178.3 90.5 91.1
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 501 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A 604 O
REMARK 620 2 HOH A 605 O 90.4
REMARK 620 3 HOH B 604 O 175.6 88.0
REMARK 620 4 HOH B 605 O 89.5 86.4 94.4
REMARK 620 5 HOH B 606 O 88.8 94.0 87.3 178.2
REMARK 620 6 HOH B 607 O 92.5 174.6 89.4 89.1 90.6
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG0 B 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P33 B 507
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4KQP RELATED DB: PDB
REMARK 900 SUBSTRATE BINDING DOMAIN 2 (SBD2) IN CLOSED CONFORMATION
REMARK 900 RELATED ID: 4KPT RELATED DB: PDB
REMARK 900 SUBSTRATE BINDING DOMAIN 1 (SBD1)
DBREF 4KR5 A 255 484 UNP Q9CES5 Q9CES5_LACLA 255 484
DBREF 4KR5 B 255 484 UNP Q9CES5 Q9CES5_LACLA 255 484
SEQADV 4KR5 GLY A 253 UNP Q9CES5 EXPRESSION TAG
SEQADV 4KR5 MET A 254 UNP Q9CES5 EXPRESSION TAG
SEQADV 4KR5 GLY B 253 UNP Q9CES5 EXPRESSION TAG
SEQADV 4KR5 MET B 254 UNP Q9CES5 EXPRESSION TAG
SEQRES 1 A 232 GLY MET ALA THR PRO LYS LYS ASP VAL TYR THR ILE ALA
SEQRES 2 A 232 SER ASP ASN SER PHE ALA PRO PHE GLU PHE GLN ASN ASP
SEQRES 3 A 232 ASP LYS GLN PHE THR GLY ILE ASP VAL ASP LEU LEU ASN
SEQRES 4 A 232 ALA ILE ALA LYS ASN GLN GLY PHE LYS LEU LYS TRP ASN
SEQRES 5 A 232 PHE ILE GLY PHE GLN ALA ALA VAL ASP SER VAL GLN SER
SEQRES 6 A 232 GLY HIS ALA ASP GLY MET MET SER GLY MET SER ILE THR
SEQRES 7 A 232 ASP ALA ARG LYS GLN VAL PHE ASP TYR GLY SER PRO TYR
SEQRES 8 A 232 TYR SER SER ASN LEU THR ILE ALA THR SER SER THR ASP
SEQRES 9 A 232 ASP SER ILE LYS SER TRP LYS ASP LEU LYS GLY LYS THR
SEQRES 10 A 232 LEU GLY ALA LYS ASN GLY THR ALA SER PHE ASP TYR LEU
SEQRES 11 A 232 ASN ALA HIS ALA LYS GLU TYR GLY TYR THR VAL LYS THR
SEQRES 12 A 232 PHE THR ASP ALA THR THR MET TYR SER SER LEU ASN ASN
SEQRES 13 A 232 GLY SER ILE ASN ALA LEU MET ASP ASP GLU PRO VAL ILE
SEQRES 14 A 232 LYS TYR ALA ILE LYS GLN GLY GLN LYS PHE ALA THR PRO
SEQRES 15 A 232 ILE LYS PRO ILE PRO ASP GLY GLN TYR GLY PHE ALA VAL
SEQRES 16 A 232 LYS LYS GLY SER ASN PRO GLU LEU ILE GLU MET PHE ASN
SEQRES 17 A 232 ASN GLY LEU ALA ASN LEU ARG ALA ASN GLY GLU TYR ASP
SEQRES 18 A 232 LYS ILE ILE ASP LYS TYR LEU GLU SER ASP ALA
SEQRES 1 B 232 GLY MET ALA THR PRO LYS LYS ASP VAL TYR THR ILE ALA
SEQRES 2 B 232 SER ASP ASN SER PHE ALA PRO PHE GLU PHE GLN ASN ASP
SEQRES 3 B 232 ASP LYS GLN PHE THR GLY ILE ASP VAL ASP LEU LEU ASN
SEQRES 4 B 232 ALA ILE ALA LYS ASN GLN GLY PHE LYS LEU LYS TRP ASN
SEQRES 5 B 232 PHE ILE GLY PHE GLN ALA ALA VAL ASP SER VAL GLN SER
SEQRES 6 B 232 GLY HIS ALA ASP GLY MET MET SER GLY MET SER ILE THR
SEQRES 7 B 232 ASP ALA ARG LYS GLN VAL PHE ASP TYR GLY SER PRO TYR
SEQRES 8 B 232 TYR SER SER ASN LEU THR ILE ALA THR SER SER THR ASP
SEQRES 9 B 232 ASP SER ILE LYS SER TRP LYS ASP LEU LYS GLY LYS THR
SEQRES 10 B 232 LEU GLY ALA LYS ASN GLY THR ALA SER PHE ASP TYR LEU
SEQRES 11 B 232 ASN ALA HIS ALA LYS GLU TYR GLY TYR THR VAL LYS THR
SEQRES 12 B 232 PHE THR ASP ALA THR THR MET TYR SER SER LEU ASN ASN
SEQRES 13 B 232 GLY SER ILE ASN ALA LEU MET ASP ASP GLU PRO VAL ILE
SEQRES 14 B 232 LYS TYR ALA ILE LYS GLN GLY GLN LYS PHE ALA THR PRO
SEQRES 15 B 232 ILE LYS PRO ILE PRO ASP GLY GLN TYR GLY PHE ALA VAL
SEQRES 16 B 232 LYS LYS GLY SER ASN PRO GLU LEU ILE GLU MET PHE ASN
SEQRES 17 B 232 ASN GLY LEU ALA ASN LEU ARG ALA ASN GLY GLU TYR ASP
SEQRES 18 B 232 LYS ILE ILE ASP LYS TYR LEU GLU SER ASP ALA
HET MG A 501 1
HET CL A 502 1
HET PEG A 503 7
HET PEG A 504 7
HET P6G A 505 19
HET MG B 501 1
HET CL B 502 1
HET CL B 503 1
HET CL B 504 1
HET PG0 B 505 8
HET PE4 B 506 19
HET P33 B 507 19
HETNAM MG MAGNESIUM ION
HETNAM CL CHLORIDE ION
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETNAM P6G HEXAETHYLENE GLYCOL
HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL
HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
HETNAM P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
HETSYN P6G POLYETHYLENE GLYCOL PEG400
HETSYN PG0 PEG 6000
HETSYN PE4 POLYETHYLENE GLYCOL PEG4000
HETSYN P33 HEPTAETHYLENE GLYCOL; PEG330
FORMUL 3 MG 2(MG 2+)
FORMUL 4 CL 4(CL 1-)
FORMUL 5 PEG 2(C4 H10 O3)
FORMUL 7 P6G C12 H26 O7
FORMUL 12 PG0 C5 H12 O3
FORMUL 13 PE4 C16 H34 O8
FORMUL 14 P33 C14 H30 O8
FORMUL 15 HOH *754(H2 O)
HELIX 1 1 GLY A 284 GLY A 298 1 15
HELIX 2 2 GLY A 307 SER A 317 1 11
HELIX 3 3 THR A 330 GLN A 335 1 6
HELIX 4 4 SER A 361 LYS A 366 5 6
HELIX 5 5 THR A 376 GLY A 390 1 15
HELIX 6 6 ASP A 398 ASN A 408 1 11
HELIX 7 7 GLU A 418 GLN A 427 1 10
HELIX 8 8 ASN A 452 GLY A 470 1 19
HELIX 9 9 GLY A 470 GLU A 481 1 12
HELIX 10 10 GLY B 284 GLY B 298 1 15
HELIX 11 11 GLY B 307 SER B 317 1 11
HELIX 12 12 THR B 330 GLN B 335 1 6
HELIX 13 13 SER B 361 LYS B 366 5 6
HELIX 14 14 THR B 376 GLY B 390 1 15
HELIX 15 15 ASP B 398 ASN B 408 1 11
HELIX 16 16 GLU B 418 GLY B 428 1 11
HELIX 17 17 ASN B 452 GLY B 470 1 19
HELIX 18 18 GLY B 470 LEU B 480 1 11
SHEET 1 A 3 LEU A 301 PHE A 305 0
SHEET 2 A 3 TYR A 262 SER A 266 1 N ILE A 264 O LYS A 302
SHEET 3 A 3 GLY A 322 MET A 323 1 O GLY A 322 N ALA A 265
SHEET 1 B 2 PHE A 275 GLN A 276 0
SHEET 2 B 2 PHE A 282 THR A 283 -1 O THR A 283 N PHE A 275
SHEET 1 C 2 PHE A 337 TYR A 339 0
SHEET 2 C 2 ALA A 446 LYS A 448 -1 O VAL A 447 N ASP A 338
SHEET 1 D 5 THR A 392 PHE A 396 0
SHEET 2 D 5 THR A 369 LYS A 373 1 N LEU A 370 O LYS A 394
SHEET 3 D 5 ALA A 413 ASP A 417 1 O ALA A 413 N GLY A 371
SHEET 4 D 5 TYR A 344 SER A 353 -1 N THR A 349 O ASP A 416
SHEET 5 D 5 PHE A 431 ALA A 432 -1 O ALA A 432 N THR A 352
SHEET 1 E 5 THR A 392 PHE A 396 0
SHEET 2 E 5 THR A 369 LYS A 373 1 N LEU A 370 O LYS A 394
SHEET 3 E 5 ALA A 413 ASP A 417 1 O ALA A 413 N GLY A 371
SHEET 4 E 5 TYR A 344 SER A 353 -1 N THR A 349 O ASP A 416
SHEET 5 E 5 ILE A 438 TYR A 443 -1 O ILE A 438 N LEU A 348
SHEET 1 F 3 LEU B 301 PHE B 305 0
SHEET 2 F 3 TYR B 262 SER B 266 1 N ILE B 264 O LYS B 302
SHEET 3 F 3 GLY B 322 MET B 323 1 O GLY B 322 N ALA B 265
SHEET 1 G 2 PHE B 275 GLN B 276 0
SHEET 2 G 2 PHE B 282 THR B 283 -1 O THR B 283 N PHE B 275
SHEET 1 H 2 PHE B 337 TYR B 339 0
SHEET 2 H 2 ALA B 446 LYS B 448 -1 O VAL B 447 N ASP B 338
SHEET 1 I 5 THR B 392 PHE B 396 0
SHEET 2 I 5 THR B 369 LYS B 373 1 N LEU B 370 O THR B 392
SHEET 3 I 5 ALA B 413 ASP B 417 1 O ALA B 413 N GLY B 371
SHEET 4 I 5 TYR B 344 SER B 353 -1 N ALA B 351 O LEU B 414
SHEET 5 I 5 PHE B 431 ALA B 432 -1 O ALA B 432 N THR B 352
SHEET 1 J 5 THR B 392 PHE B 396 0
SHEET 2 J 5 THR B 369 LYS B 373 1 N LEU B 370 O THR B 392
SHEET 3 J 5 ALA B 413 ASP B 417 1 O ALA B 413 N GLY B 371
SHEET 4 J 5 TYR B 344 SER B 353 -1 N ALA B 351 O LEU B 414
SHEET 5 J 5 ILE B 438 TYR B 443 -1 O ILE B 438 N LEU B 348
LINK MG MG A 501 O HOH A 601 1555 1555 2.17
LINK MG MG A 501 O HOH A 602 1555 1555 2.15
LINK MG MG A 501 O HOH A 603 1555 1555 2.18
LINK MG MG A 501 O HOH B 601 1555 1555 2.16
LINK MG MG A 501 O HOH B 602 1555 1555 2.15
LINK MG MG A 501 O HOH B 603 1555 1555 2.17
LINK O HOH A 604 MG MG B 501 1555 1555 2.17
LINK O HOH A 605 MG MG B 501 1555 1555 2.16
LINK MG MG B 501 O HOH B 604 1555 1555 2.16
LINK MG MG B 501 O HOH B 605 1555 1555 2.17
LINK MG MG B 501 O HOH B 606 1555 1555 2.19
LINK MG MG B 501 O HOH B 607 1555 1555 2.19
CISPEP 1 ALA A 271 PRO A 272 0 6.33
CISPEP 2 ALA B 271 PRO B 272 0 5.73
SITE 1 AC1 6 HOH A 601 HOH A 602 HOH A 603 HOH B 601
SITE 2 AC1 6 HOH B 602 HOH B 603
SITE 1 AC2 2 ARG A 333 CL B 504
SITE 1 AC3 14 ASP A 338 LYS A 449 PEG A 504 HOH A 667
SITE 2 AC3 14 HOH A 781 HOH A 889 PRO B 434 ILE B 435
SITE 3 AC3 14 LYS B 436 PRO B 437 ASP B 483 HOH B 699
SITE 4 AC3 14 HOH B 789 HOH B 884
SITE 1 AC4 11 LYS A 334 PHE A 337 ASP A 338 TYR A 339
SITE 2 AC4 11 PEG A 503 HOH A 663 HOH A 713 HOH A 830
SITE 3 AC4 11 HOH A 916 HOH A 973 LYS B 436
SITE 1 AC5 5 TYR A 403 GLN A 429 HOH A 743 HOH A 909
SITE 2 AC5 5 HOH A 990
SITE 1 AC6 6 HOH A 604 HOH A 605 HOH B 604 HOH B 605
SITE 2 AC6 6 HOH B 606 HOH B 607
SITE 1 AC7 3 PHE B 308 GLN B 309 HOH B 923
SITE 1 AC8 4 GLN A 297 ASN A 465 GLN B 297 ASN B 465
SITE 1 AC9 2 CL A 502 ARG B 333
SITE 1 BC1 5 GLN B 427 GLN B 429 PE4 B 506 HOH B 876
SITE 2 BC1 5 HOH B 908
SITE 1 BC2 7 TYR B 403 PG0 B 505 HOH B 672 HOH B 754
SITE 2 BC2 7 HOH B 755 HOH B 853 HOH B 876
SITE 1 BC3 4 TRP B 362 GLU B 388 TYR B 389 PRO B 437
CRYST1 88.691 89.123 59.477 90.00 95.58 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011275 0.000000 0.001102 0.00000
SCALE2 0.000000 0.011220 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016893 0.00000