HEADER TRANSFERASE/SIGNALING PROTEIN 16-MAY-13 4KRC TITLE CRYSTAL STRUCTURE OF PHO85-PCL10-ATP-GAMMA-S COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT PROTEIN KINASE PHO85; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEGATIVE REGULATOR OF THE PHO SYSTEM, SERINE/THREONINE- COMPND 5 PROTEIN KINASE PHO85; COMPND 6 EC: 2.7.11.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHO85 CYCLIN-10; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 227-433; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: P7102.18A, PHO85, SSG3, YPL031C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE60; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: G2838, PCL10, YGL134W; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PSBET KEYWDS GLYCOGEN SYNTHESIS, GLYCOGEN SYNTHESIS REGULATION, TRANSFERASE- KEYWDS 2 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.A.QUIOCHO,F.ZHENG REVDAT 4 28-FEB-24 4KRC 1 REMARK SEQADV REVDAT 3 13-NOV-13 4KRC 1 JRNL REVDAT 2 02-OCT-13 4KRC 1 JRNL REVDAT 1 18-SEP-13 4KRC 0 JRNL AUTH F.ZHENG,F.A.QUIOCHO JRNL TITL NEW STRUCTURAL INSIGHTS INTO PHOSPHORYLATION-FREE MECHANISM JRNL TITL 2 FOR FULL CYCLIN-DEPENDENT KINASE (CDK)-CYCLIN ACTIVITY AND JRNL TITL 3 SUBSTRATE RECOGNITION. JRNL REF J.BIOL.CHEM. V. 288 30682 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24022486 JRNL DOI 10.1074/JBC.M113.502773 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 15166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4457 - 4.4394 1.00 3060 184 0.1979 0.2529 REMARK 3 2 4.4394 - 3.5244 1.00 3009 168 0.1832 0.2729 REMARK 3 3 3.5244 - 3.0791 1.00 3022 144 0.2093 0.2866 REMARK 3 4 3.0791 - 2.7976 0.97 2901 151 0.2283 0.2894 REMARK 3 5 2.7976 - 2.5972 0.80 2418 109 0.2339 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 81.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.41120 REMARK 3 B22 (A**2) : -12.63790 REMARK 3 B33 (A**2) : 5.22670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -14.05210 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3630 REMARK 3 ANGLE : 0.966 4957 REMARK 3 CHIRALITY : 0.059 596 REMARK 3 PLANARITY : 0.004 623 REMARK 3 DIHEDRAL : 19.060 1245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 3.0252 -5.7994 34.4235 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.3455 REMARK 3 T33: 0.3453 T12: -0.0153 REMARK 3 T13: -0.0126 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1652 L22: 1.3119 REMARK 3 L33: 1.2150 L12: 0.4113 REMARK 3 L13: -0.2370 L23: -0.7285 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0054 S13: -0.0333 REMARK 3 S21: 0.1713 S22: 0.0119 S23: -0.0566 REMARK 3 S31: -0.1370 S32: 0.0527 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 11.4464 -15.5930 4.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.5539 T22: 0.8157 REMARK 3 T33: 0.8242 T12: -0.0000 REMARK 3 T13: 0.0177 T23: -0.2300 REMARK 3 L TENSOR REMARK 3 L11: 0.6294 L22: 0.6325 REMARK 3 L33: 0.9102 L12: -0.0357 REMARK 3 L13: 0.6950 L23: 0.2846 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: 0.1554 S13: -0.8256 REMARK 3 S21: -0.0198 S22: 0.2351 S23: -0.2907 REMARK 3 S31: 0.1802 S32: 0.4117 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.597 REMARK 200 RESOLUTION RANGE LOW (A) : 39.441 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-25% POLYETHYLENE GLYCOL 5000 REMARK 280 MONOMETHYL ETHER (PEG 5K MME), 0.1 M 2-MORPHOLINOETHANESULFONIC REMARK 280 ACID (MES), PH 6.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.68900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HETERODIMER IS COMPOSED OF ONE MOLECULAR PHO85 AND ONE REMARK 300 MOLECULAR PCL10 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 98 REMARK 465 GLY A 99 REMARK 465 ASN A 100 REMARK 465 THR A 101 REMARK 465 HIS A 303 REMARK 465 ALA A 304 REMARK 465 SER A 305 REMARK 465 MET A 306 REMARK 465 GLY A 307 REMARK 465 GLY A 308 REMARK 465 SER A 309 REMARK 465 ARG A 310 REMARK 465 SER A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 SER B 227 REMARK 465 LEU B 228 REMARK 465 PRO B 229 REMARK 465 HIS B 230 REMARK 465 ASP B 231 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 GLU B 234 REMARK 465 ASP B 235 REMARK 465 GLN B 236 REMARK 465 GLU B 237 REMARK 465 LYS B 238 REMARK 465 THR B 239 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 GLU B 242 REMARK 465 SER B 243 REMARK 465 GLU B 256 REMARK 465 VAL B 257 REMARK 465 ARG B 283 REMARK 465 LYS B 284 REMARK 465 CYS B 285 REMARK 465 THR B 286 REMARK 465 GLY B 287 REMARK 465 PHE B 288 REMARK 465 CYS B 432 REMARK 465 VAL B 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 4 OG REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 SER A 42 OG REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 91 NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 144 CD NE CZ NH1 NH2 REMARK 470 ARG A 156 CZ NH1 NH2 REMARK 470 ASN A 163 CG OD1 ND2 REMARK 470 PHE A 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 ARG A 184 CZ NH1 NH2 REMARK 470 LYS A 206 CE NZ REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 LYS A 241 CD CE NZ REMARK 470 ILE A 246 CD1 REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 289 CD CE NZ REMARK 470 HIS A 302 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 HIS B 249 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 254 CG OD1 OD2 REMARK 470 HIS B 259 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 260 O CG1 CG2 CD1 REMARK 470 VAL B 262 CG1 CG2 REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 PHE B 269 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 GLU B 274 CD OE1 OE2 REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 LEU B 279 CG CD1 CD2 REMARK 470 ASN B 282 CG OD1 ND2 REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 ARG B 291 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 LYS B 295 CD CE NZ REMARK 470 MET B 302 CG SD CE REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 LEU B 308 CG CD1 CD2 REMARK 470 SER B 309 OG REMARK 470 ASP B 312 CG OD1 OD2 REMARK 470 LEU B 314 CG CD1 CD2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 ARG B 316 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 318 CG CD OE1 NE2 REMARK 470 ASP B 319 CG OD1 OD2 REMARK 470 LYS B 320 CG CD CE NZ REMARK 470 GLU B 322 CG CD OE1 OE2 REMARK 470 LEU B 329 CG CD1 CD2 REMARK 470 ASN B 345 CG OD1 ND2 REMARK 470 LEU B 350 CG CD1 CD2 REMARK 470 LYS B 351 CE NZ REMARK 470 LEU B 352 CG CD1 CD2 REMARK 470 GLU B 356 CG CD OE1 OE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 VAL B 359 CG1 CG2 REMARK 470 PHE B 377 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 383 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 384 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 385 OG REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 ILE B 390 CG1 CG2 CD1 REMARK 470 SER B 391 OG REMARK 470 LYS B 392 CG CD CE NZ REMARK 470 ARG B 393 NE CZ NH1 NH2 REMARK 470 LEU B 394 CG CD1 CD2 REMARK 470 LYS B 397 CG CD CE NZ REMARK 470 LEU B 398 CG CD1 CD2 REMARK 470 ASN B 408 CG OD1 ND2 REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 LYS B 422 CG CD CE NZ REMARK 470 GLU B 427 CG CD OE1 OE2 REMARK 470 LEU B 428 CG CD1 CD2 REMARK 470 ARG B 429 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 106.98 87.91 REMARK 500 LEU A 10 -146.90 -127.69 REMARK 500 THR A 28 -74.06 -78.36 REMARK 500 THR A 74 -163.79 -101.61 REMARK 500 ASP A 133 39.89 -144.58 REMARK 500 VAL A 170 119.42 75.67 REMARK 500 SER A 187 -129.61 -105.76 REMARK 500 PRO A 210 39.78 -70.06 REMARK 500 TRP A 233 64.89 -167.18 REMARK 500 ILE A 246 160.86 -46.59 REMARK 500 ARG A 249 114.15 -171.74 REMARK 500 ASN B 245 107.57 57.65 REMARK 500 LEU B 247 -6.18 -56.91 REMARK 500 HIS B 249 96.30 -63.56 REMARK 500 VAL B 253 -3.88 -58.86 REMARK 500 ASP B 254 -62.05 -95.97 REMARK 500 PRO B 306 109.59 -42.04 REMARK 500 GLU B 322 70.19 44.09 REMARK 500 THR B 341 151.09 176.67 REMARK 500 VAL B 387 -17.89 -48.52 REMARK 500 ARG B 429 -111.95 -71.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 138 OD1 REMARK 620 2 AGS A 402 O2A 73.9 REMARK 620 3 AGS A 402 O2G 63.8 95.6 REMARK 620 4 AGS A 402 O3B 96.6 59.3 58.0 REMARK 620 5 AGS A 402 O3' 105.1 85.4 167.8 131.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KRD RELATED DB: PDB DBREF 4KRC A 1 305 UNP P17157 PHO85_YEAST 1 305 DBREF 4KRC B 227 433 UNP P53124 PCL10_YEAST 227 433 SEQADV 4KRC MET A 306 UNP P17157 EXPRESSION TAG SEQADV 4KRC GLY A 307 UNP P17157 EXPRESSION TAG SEQADV 4KRC GLY A 308 UNP P17157 EXPRESSION TAG SEQADV 4KRC SER A 309 UNP P17157 EXPRESSION TAG SEQADV 4KRC ARG A 310 UNP P17157 EXPRESSION TAG SEQADV 4KRC SER A 311 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 312 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 313 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 314 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 315 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 316 UNP P17157 EXPRESSION TAG SEQADV 4KRC HIS A 317 UNP P17157 EXPRESSION TAG SEQRES 1 A 317 MET SER SER SER SER GLN PHE LYS GLN LEU GLU LYS LEU SEQRES 2 A 317 GLY ASN GLY THR TYR ALA THR VAL TYR LYS GLY LEU ASN SEQRES 3 A 317 LYS THR THR GLY VAL TYR VAL ALA LEU LYS GLU VAL LYS SEQRES 4 A 317 LEU ASP SER GLU GLU GLY THR PRO SER THR ALA ILE ARG SEQRES 5 A 317 GLU ILE SER LEU MET LYS GLU LEU LYS HIS GLU ASN ILE SEQRES 6 A 317 VAL ARG LEU TYR ASP VAL ILE HIS THR GLU ASN LYS LEU SEQRES 7 A 317 THR LEU VAL PHE GLU PHE MET ASP ASN ASP LEU LYS LYS SEQRES 8 A 317 TYR MET ASP SER ARG THR VAL GLY ASN THR PRO ARG GLY SEQRES 9 A 317 LEU GLU LEU ASN LEU VAL LYS TYR PHE GLN TRP GLN LEU SEQRES 10 A 317 LEU GLN GLY LEU ALA PHE CYS HIS GLU ASN LYS ILE LEU SEQRES 11 A 317 HIS ARG ASP LEU LYS PRO GLN ASN LEU LEU ILE ASN LYS SEQRES 12 A 317 ARG GLY GLN LEU LYS LEU GLY ASP PHE GLY LEU ALA ARG SEQRES 13 A 317 ALA PHE GLY ILE PRO VAL ASN THR PHE SER SER GLU VAL SEQRES 14 A 317 VAL THR LEU TRP TYR ARG ALA PRO ASP VAL LEU MET GLY SEQRES 15 A 317 SER ARG THR TYR SER THR SER ILE ASP ILE TRP SER CYS SEQRES 16 A 317 GLY CYS ILE LEU ALA GLU MET ILE THR GLY LYS PRO LEU SEQRES 17 A 317 PHE PRO GLY THR ASN ASP GLU GLU GLN LEU LYS LEU ILE SEQRES 18 A 317 PHE ASP ILE MET GLY THR PRO ASN GLU SER LEU TRP PRO SEQRES 19 A 317 SER VAL THR LYS LEU PRO LYS TYR ASN PRO ASN ILE GLN SEQRES 20 A 317 GLN ARG PRO PRO ARG ASP LEU ARG GLN VAL LEU GLN PRO SEQRES 21 A 317 HIS THR LYS GLU PRO LEU ASP GLY ASN LEU MET ASP PHE SEQRES 22 A 317 LEU HIS GLY LEU LEU GLN LEU ASN PRO ASP MET ARG LEU SEQRES 23 A 317 SER ALA LYS GLN ALA LEU HIS HIS PRO TRP PHE ALA GLU SEQRES 24 A 317 TYR TYR HIS HIS ALA SER MET GLY GLY SER ARG SER HIS SEQRES 25 A 317 HIS HIS HIS HIS HIS SEQRES 1 B 207 SER LEU PRO HIS ASP GLU GLU GLU ASP GLN GLU LYS THR SEQRES 2 B 207 LYS SER GLU SER GLU ASN PRO LEU LEU HIS GLY ILE PRO SEQRES 3 B 207 VAL ASP VAL GLU VAL PRO HIS ILE SER VAL ASP GLU ALA SEQRES 4 B 207 LEU ALA ASN PHE LYS GLU THR ILE GLU LEU LEU LEU LYS SEQRES 5 B 207 LEU SER GLY ASN ARG LYS CYS THR GLY PHE ASN THR ARG SEQRES 6 B 207 VAL GLU LYS LYS GLU TYR SER ASN PHE TYR MET LYS SER SEQRES 7 B 207 LYS PRO THR LEU SER SER ALA ASP PHE LEU LYS ARG ILE SEQRES 8 B 207 GLN ASP LYS CYS GLU TYR GLN PRO THR VAL TYR LEU VAL SEQRES 9 B 207 ALA THR PHE LEU ILE ASP THR LEU PHE LEU THR ARG ASP SEQRES 10 B 207 GLY ASN ASN ILE LEU GLN LEU LYS LEU ASN LEU GLN GLU SEQRES 11 B 207 LYS GLU VAL HIS ARG MET ILE ILE ALA ALA VAL ARG LEU SEQRES 12 B 207 SER THR LYS LEU LEU GLU ASP PHE VAL HIS SER HIS GLU SEQRES 13 B 207 TYR PHE SER LYS VAL CYS GLY ILE SER LYS ARG LEU LEU SEQRES 14 B 207 THR LYS LEU GLU VAL SER LEU LEU ILE CYS VAL CYS ASN SEQRES 15 B 207 THR LYS LEU MET VAL SER ASN ARG LYS LEU ALA ALA SER SEQRES 16 B 207 LYS LEU LEU LEU ASN GLU LEU ARG SER PHE CYS VAL HET MG A 401 1 HET AGS A 402 31 HETNAM MG MAGNESIUM ION HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 AGS C10 H16 N5 O12 P3 S FORMUL 5 HOH *23(H2 O) HELIX 1 1 SER A 3 SER A 5 5 3 HELIX 2 2 PRO A 47 LEU A 56 1 10 HELIX 3 3 LEU A 89 SER A 95 1 7 HELIX 4 4 GLU A 106 ASN A 127 1 22 HELIX 5 5 LYS A 135 GLN A 137 5 3 HELIX 6 6 ASP A 151 ALA A 155 5 5 HELIX 7 7 THR A 171 ARG A 175 5 5 HELIX 8 8 ALA A 176 MET A 181 1 6 HELIX 9 9 THR A 188 GLY A 205 1 18 HELIX 10 10 ASN A 213 GLY A 226 1 14 HELIX 11 11 TRP A 233 LEU A 239 5 7 HELIX 12 12 ASP A 253 GLN A 259 1 7 HELIX 13 13 PRO A 260 THR A 262 5 3 HELIX 14 14 ASP A 267 LEU A 278 1 12 HELIX 15 15 ASN A 281 ARG A 285 5 5 HELIX 16 16 SER A 287 LEU A 292 1 6 HELIX 17 17 HIS A 294 TYR A 301 5 8 HELIX 18 18 ASN B 245 HIS B 249 5 5 HELIX 19 19 SER B 261 GLY B 281 1 21 HELIX 20 20 THR B 290 GLU B 296 1 7 HELIX 21 21 TYR B 297 TYR B 301 5 5 HELIX 22 22 SER B 309 GLU B 322 1 14 HELIX 23 23 GLN B 324 PHE B 339 1 16 HELIX 24 24 GLN B 355 GLU B 375 1 21 HELIX 25 25 SER B 380 CYS B 388 1 9 HELIX 26 26 SER B 391 CYS B 407 1 17 HELIX 27 27 SER B 414 GLU B 427 1 14 SHEET 1 A 5 PHE A 7 ASN A 15 0 SHEET 2 A 5 ALA A 19 ASN A 26 -1 O VAL A 21 N LEU A 13 SHEET 3 A 5 TYR A 32 LYS A 39 -1 O LEU A 35 N TYR A 22 SHEET 4 A 5 LYS A 77 GLU A 83 -1 O LEU A 78 N VAL A 38 SHEET 5 A 5 LEU A 68 THR A 74 -1 N TYR A 69 O VAL A 81 SHEET 1 B 3 ASN A 87 ASP A 88 0 SHEET 2 B 3 LEU A 139 ILE A 141 -1 O ILE A 141 N ASN A 87 SHEET 3 B 3 LEU A 147 LEU A 149 -1 O LYS A 148 N LEU A 140 SHEET 1 C 2 ILE A 129 LEU A 130 0 SHEET 2 C 2 ARG A 156 ALA A 157 -1 O ARG A 156 N LEU A 130 SHEET 1 D 2 LEU B 340 ARG B 342 0 SHEET 2 D 2 LEU B 348 LEU B 350 -1 O GLN B 349 N THR B 341 LINK OD1 ASN A 138 MG MG A 401 1555 1555 2.46 LINK MG MG A 401 O2A AGS A 402 1555 1555 2.64 LINK MG MG A 401 O2G AGS A 402 1555 1555 2.64 LINK MG MG A 401 O3B AGS A 402 1555 1555 2.65 LINK MG MG A 401 O3' AGS A 402 1555 1555 2.97 CISPEP 1 PRO A 102 ARG A 103 0 -10.91 SITE 1 AC1 3 ASN A 138 ASP A 151 AGS A 402 SITE 1 AC2 17 GLY A 16 THR A 17 TYR A 18 VAL A 21 SITE 2 AC2 17 ALA A 34 LYS A 36 GLU A 83 MET A 85 SITE 3 AC2 17 ASP A 88 ASP A 133 LYS A 135 GLN A 137 SITE 4 AC2 17 ASN A 138 LEU A 140 ASP A 151 MG A 401 SITE 5 AC2 17 HOH A 504 CRYST1 50.145 65.378 80.254 90.00 100.61 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019942 0.000000 0.003735 0.00000 SCALE2 0.000000 0.015296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012677 0.00000