HEADER IMMUNE SYSTEM 20-MAY-13 4KTE TITLE FAB FRAGMENT OF HIV VACCINE-ELICITED CD4BS-DIRECTED ANTIBODY, GE148, TITLE 2 FROM NON-HUMAN PRIMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GE148 HEAVY CHAIN FAB; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GE148 LIGHT CHAIN FAB; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CMV-R EXPRESSION PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 12 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 13 ORGANISM_TAXID: 9544; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: CMV-R EXPRESSION PLASMID KEYWDS ANTIBODY AFFINITY, ANTIBODY SPECIFICITY, VACCINE ELICITED ANTIBODIES, KEYWDS 2 FAB FRAGMENT, AIDS VACCINES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.POULSEN,K.TRAN,R.STANFIELD,R.T.WYATT REVDAT 4 25-DEC-19 4KTE 1 SEQRES LINK REVDAT 3 15-NOV-17 4KTE 1 REMARK REVDAT 2 19-MAR-14 4KTE 1 JRNL REVDAT 1 05-FEB-14 4KTE 0 JRNL AUTH K.TRAN,C.POULSEN,J.GUENAGA,N.DE VAL ALDA,R.WILSON, JRNL AUTH 2 C.SUNDLING,Y.LI,R.L.STANFIELD,I.A.WILSON,A.B.WARD, JRNL AUTH 3 G.B.KARLSSON HEDESTAM,R.T.WYATT JRNL TITL VACCINE-ELICITED PRIMATE ANTIBODIES USE A DISTINCT APPROACH JRNL TITL 2 TO THE HIV-1 PRIMARY RECEPTOR BINDING SITE INFORMING VACCINE JRNL TITL 3 REDESIGN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E738 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24550318 JRNL DOI 10.1073/PNAS.1319512111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9414 - 4.6978 0.99 2898 153 0.1811 0.1769 REMARK 3 2 4.6978 - 3.7368 1.00 2777 146 0.1372 0.1496 REMARK 3 3 3.7368 - 3.2668 0.99 2713 143 0.1571 0.1824 REMARK 3 4 3.2668 - 2.9692 1.00 2749 145 0.1698 0.1884 REMARK 3 5 2.9692 - 2.7569 1.00 2720 143 0.1686 0.2200 REMARK 3 6 2.7569 - 2.5947 1.00 2695 142 0.1779 0.2326 REMARK 3 7 2.5947 - 2.4650 1.00 2695 141 0.1685 0.2015 REMARK 3 8 2.4650 - 2.3579 1.00 2692 142 0.1650 0.1882 REMARK 3 9 2.3579 - 2.2673 1.00 2660 140 0.1640 0.1825 REMARK 3 10 2.2673 - 2.1891 1.00 2698 142 0.1592 0.1926 REMARK 3 11 2.1891 - 2.1208 1.00 2671 141 0.1601 0.1986 REMARK 3 12 2.1208 - 2.0602 1.00 2682 141 0.1631 0.2457 REMARK 3 13 2.0602 - 2.0060 1.00 2661 140 0.1594 0.2017 REMARK 3 14 2.0060 - 1.9571 1.00 2662 140 0.1605 0.2159 REMARK 3 15 1.9571 - 1.9127 1.00 2692 142 0.1732 0.2307 REMARK 3 16 1.9127 - 1.8720 1.00 2657 140 0.1835 0.2452 REMARK 3 17 1.8720 - 1.8346 1.00 2662 140 0.1948 0.2411 REMARK 3 18 1.8346 - 1.8000 1.00 2647 139 0.1886 0.2077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 44.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.68990 REMARK 3 B22 (A**2) : 5.00940 REMARK 3 B33 (A**2) : -2.31950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3366 REMARK 3 ANGLE : 1.154 4593 REMARK 3 CHIRALITY : 0.079 521 REMARK 3 PLANARITY : 0.005 579 REMARK 3 DIHEDRAL : 12.900 1181 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 2:25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8206 -29.9237 -24.8716 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0742 REMARK 3 T33: 0.0699 T12: -0.0167 REMARK 3 T13: 0.0000 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 4.5778 L22: 1.6948 REMARK 3 L33: 3.2957 L12: -1.9611 REMARK 3 L13: -0.9443 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.2726 S13: 0.0598 REMARK 3 S21: -0.0466 S22: -0.0118 S23: -0.0219 REMARK 3 S31: 0.0832 S32: 0.0873 S33: -0.0147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 26:74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5987 -28.0906 -13.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0896 REMARK 3 T33: 0.0665 T12: 0.0113 REMARK 3 T13: 0.0025 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.1255 L22: 2.1869 REMARK 3 L33: 2.4236 L12: -0.1437 REMARK 3 L13: -0.3514 L23: 0.2975 REMARK 3 S TENSOR REMARK 3 S11: -0.1767 S12: -0.2075 S13: -0.1269 REMARK 3 S21: 0.0494 S22: 0.0975 S23: -0.1111 REMARK 3 S31: 0.1480 S32: 0.1989 S33: 0.0805 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 75:92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8015 -32.5840 -19.4014 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0852 REMARK 3 T33: 0.0945 T12: -0.0255 REMARK 3 T13: 0.0193 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 6.3139 L22: 2.1924 REMARK 3 L33: 2.4230 L12: -1.3355 REMARK 3 L13: -0.8812 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.2296 S12: 0.0012 S13: -0.4357 REMARK 3 S21: 0.0505 S22: 0.1391 S23: 0.0301 REMARK 3 S31: 0.2379 S32: 0.0201 S33: 0.1002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 93:104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8479 -22.4739 -17.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1016 REMARK 3 T33: 0.1323 T12: -0.0086 REMARK 3 T13: -0.0080 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.1678 L22: 0.7564 REMARK 3 L33: 3.7452 L12: 0.1702 REMARK 3 L13: 0.7817 L23: 0.5314 REMARK 3 S TENSOR REMARK 3 S11: -0.2577 S12: 0.6260 S13: -0.0601 REMARK 3 S21: 0.0384 S22: 0.2693 S23: -0.1749 REMARK 3 S31: -0.1345 S32: 0.5929 S33: 0.0357 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN H AND RESID 105:116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6799 -19.2145 -10.3058 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.1237 REMARK 3 T33: 0.1348 T12: 0.0202 REMARK 3 T13: -0.0199 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 8.5701 L22: 0.9583 REMARK 3 L33: 4.9513 L12: 1.7239 REMARK 3 L13: 6.5118 L23: 1.2429 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.0510 S13: -0.0587 REMARK 3 S21: 0.0108 S22: 0.0635 S23: 0.0758 REMARK 3 S31: 0.1933 S32: 0.0912 S33: -0.1230 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN H AND RESID 117:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3843 -25.2356 -27.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0919 REMARK 3 T33: 0.1082 T12: -0.0358 REMARK 3 T13: 0.0054 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.0265 L22: 1.6399 REMARK 3 L33: 4.2257 L12: -1.0615 REMARK 3 L13: 0.7044 L23: -0.3429 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.0402 S13: 0.0720 REMARK 3 S21: -0.0368 S22: 0.0858 S23: 0.1215 REMARK 3 S31: 0.1035 S32: -0.2409 S33: -0.0049 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN H AND RESID 134:201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7710 -13.1462 -41.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.0730 REMARK 3 T33: 0.1624 T12: -0.0325 REMARK 3 T13: 0.0468 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.3940 L22: 2.2318 REMARK 3 L33: 2.2821 L12: -0.0505 REMARK 3 L13: -0.2250 L23: -0.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: 0.0357 S13: 0.2493 REMARK 3 S21: -0.1516 S22: 0.1866 S23: -0.2872 REMARK 3 S31: -0.2727 S32: -0.0121 S33: -0.1651 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN H AND RESID 202:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6159 -19.5003 -47.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.1036 REMARK 3 T33: 0.1364 T12: 0.0051 REMARK 3 T13: 0.0377 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 3.4367 L22: 5.6497 REMARK 3 L33: 6.7349 L12: 2.1746 REMARK 3 L13: -2.7182 L23: -4.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.2137 S13: 0.1660 REMARK 3 S21: -0.7082 S22: 0.0601 S23: -0.1198 REMARK 3 S31: 0.4062 S32: 0.0719 S33: -0.1043 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN L AND RESID 2:115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9744 -6.6387 -11.5552 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1115 REMARK 3 T33: 0.1284 T12: -0.0315 REMARK 3 T13: -0.0437 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 3.0063 L22: 2.3874 REMARK 3 L33: 2.3773 L12: 0.0803 REMARK 3 L13: 0.4410 L23: -0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: 0.0258 S13: 0.3264 REMARK 3 S21: -0.1193 S22: 0.0389 S23: 0.0359 REMARK 3 S31: -0.2759 S32: 0.1388 S33: 0.0710 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN L AND RESID 116:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5086 -2.1702 -39.7597 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.0684 REMARK 3 T33: 0.1151 T12: -0.0001 REMARK 3 T13: -0.0033 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7847 L22: 3.8919 REMARK 3 L33: 3.6501 L12: 0.3964 REMARK 3 L13: 0.7831 L23: 0.9556 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0070 S13: 0.0027 REMARK 3 S21: 0.0112 S22: 0.0488 S23: 0.2299 REMARK 3 S31: -0.2556 S32: -0.0923 S33: -0.0415 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M NH4SO4, 25.5%(W/V) PEG4000, REMARK 280 15%(V/V) GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.35500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 HIS H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 PRO H 222 REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 637 O HOH L 616 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -12.23 91.39 REMARK 500 VAL H 100 -121.34 -98.83 REMARK 500 ASP H 144 63.84 63.06 REMARK 500 ASP L 151 -110.64 51.38 REMARK 500 ASN L 170 -0.55 74.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KTD RELATED DB: PDB DBREF 4KTE H 1 222 PDB 4KTE 4KTE 1 222 DBREF 4KTE L 1 212 PDB 4KTE 4KTE 1 212 SEQRES 1 H 235 PCA LEU GLN LEU GLN GLU SER GLY PRO GLY LEU LEU LYS SEQRES 2 H 235 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 235 GLY SER ILE SER GLY GLY TYR GLY TRP GLY TRP ILE ARG SEQRES 4 H 235 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 235 TYR SER SER SER GLY SER THR ASP TYR ASN PRO SER LEU SEQRES 6 H 235 LYS SER ARG VAL THR ILE SER THR ASP THR SER LYS ASN SEQRES 7 H 235 GLN LEU SER LEU LYS LEU SER SER VAL THR ALA ALA ASP SEQRES 8 H 235 THR ALA VAL TYR TYR CYS ALA ARG VAL GLN ASN ILE VAL SEQRES 9 H 235 VAL VAL PHE THR ILE LYS GLU PHE PHE GLU LEU TRP GLY SEQRES 10 H 235 GLN GLY ALA LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 235 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 235 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 235 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 235 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 235 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 235 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 235 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 235 LYS ARG VAL GLU PRO LYS SER HIS HIS HIS HIS HIS HIS SEQRES 19 H 235 PRO SEQRES 1 L 221 PCA PRO VAL LEU THR GLN PRO THR PHE LEU SER ALA SER SEQRES 2 L 221 PRO GLY ALA SER ALA ARG LEU SER CYS THR LEU SER SER SEQRES 3 L 221 GLY ILE ASN VAL GLY SER TYR SER ILE PHE TRP TYR GLN SEQRES 4 L 221 GLN LYS PRO GLY SER PRO PRO ARG TYR LEU LEU TYR TYR SEQRES 5 L 221 TYR SER ASP SER SER LYS TYR GLN GLY SER GLY VAL PRO SEQRES 6 L 221 SER ARG PHE SER GLY SER LYS ASP ALA SER ALA ASN ALA SEQRES 7 L 221 GLY LEU LEU LEU ILE SER GLY LEU GLN SER GLU ASP GLU SEQRES 8 L 221 ALA ASP TYR TYR CYS ALA ILE TRP HIS ASN PHE ALA CYS SEQRES 9 L 221 VAL PHE GLY GLY GLY THR ARG LEU THR VAL LEU GLY GLN SEQRES 10 L 221 PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SEQRES 11 L 221 SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 221 LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA SEQRES 13 L 221 TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU SEQRES 14 L 221 THR THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA SEQRES 15 L 221 ALA SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SEQRES 16 L 221 SER HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SEQRES 17 L 221 SER THR VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER MODRES 4KTE PCA H 1 GLN PYROGLUTAMIC ACID MODRES 4KTE PCA L 1 GLN PYROGLUTAMIC ACID HET PCA H 1 8 HET PCA L 1 8 HET SO4 H 301 5 HET GOL H 302 6 HET SO4 L 301 5 HET SO4 L 302 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GOL C3 H8 O3 FORMUL 7 HOH *496(H2 O) HELIX 1 1 LEU H 63 SER H 65 5 3 HELIX 2 2 THR H 83 THR H 87 5 5 HELIX 3 3 SER H 156 ALA H 158 5 3 HELIX 4 4 SER H 187 LEU H 189 5 3 HELIX 5 5 LYS H 201 ASN H 204 5 4 HELIX 6 6 ASN L 27C TYR L 31 5 5 HELIX 7 7 GLN L 79 GLU L 83 5 5 HELIX 8 8 SER L 121 ALA L 127 1 7 HELIX 9 9 THR L 181 SER L 187 1 7 SHEET 1 A 4 GLN H 3 GLU H 6 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 A 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N SER H 70 O SER H 79 SHEET 1 B 6 GLY H 10 LEU H 12 0 SHEET 2 B 6 ALA H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 B 6 ALA H 88 VAL H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 B 6 GLY H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 B 6 GLU H 46 TYR H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O ASP H 58 N SER H 50 SHEET 1 C 4 GLY H 10 LEU H 12 0 SHEET 2 C 4 ALA H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 C 4 ALA H 88 VAL H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 C 4 ILE H 100D TRP H 103 -1 O LYS H 100E N ILE H 98 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 D 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 2 E 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 E 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 E 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 F 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 G 4 LEU L 4 THR L 5 0 SHEET 2 G 4 ALA L 19 LEU L 25 -1 O THR L 24 N THR L 5 SHEET 3 G 4 ALA L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 G 4 PHE L 62 ASP L 66A-1 N ASP L 66A O ALA L 70 SHEET 1 H 6 PHE L 9 ALA L 13 0 SHEET 2 H 6 THR L 102 VAL L 106 1 O THR L 105 N LEU L 11 SHEET 3 H 6 ALA L 84 HIS L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 H 6 ILE L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 H 6 ARG L 45 SER L 52 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 SER L 54A GLN L 54D-1 O SER L 54A N TYR L 51 SHEET 1 I 4 PHE L 9 ALA L 13 0 SHEET 2 I 4 THR L 102 VAL L 106 1 O THR L 105 N LEU L 11 SHEET 3 I 4 ALA L 84 HIS L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 I 4 ALA L 95 PHE L 98 -1 O VAL L 97 N ILE L 90 SHEET 1 J 4 SER L 114 PHE L 118 0 SHEET 2 J 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 J 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 J 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 K 4 SER L 114 PHE L 118 0 SHEET 2 K 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 K 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 K 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 L 4 SER L 153 VAL L 155 0 SHEET 2 L 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 L 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 L 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.05 LINK C PCA H 1 N LEU H 2 1555 1555 1.33 LINK C PCA L 1 N PRO L 2 1555 1555 1.35 CISPEP 1 PHE H 146 PRO H 147 0 -3.13 CISPEP 2 GLU H 148 PRO H 149 0 -0.52 CISPEP 3 TYR L 140 PRO L 141 0 -1.94 SITE 1 AC1 6 ARG H 94 SER H 112 SER H 113 HOH H 459 SITE 2 AC1 6 HOH H 511 HOH H 571 SITE 1 AC2 9 GLY H 8 GLY H 10 LEU H 12 LEU H 18 SITE 2 AC2 9 SER H 19 HOH H 403 HOH H 432 HOH H 480 SITE 3 AC2 9 HOH H 667 SITE 1 AC3 6 TYR L 31 HIS L 92 ASN L 93 HOH L 405 SITE 2 AC3 6 HOH L 469 HOH L 555 SITE 1 AC4 5 ARG L 45 PRO L 59 ARG L 61 GLU L 81 SITE 2 AC4 5 HOH L 449 CRYST1 42.710 72.040 175.740 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005690 0.00000 HETATM 1 N PCA H 1 33.508 -22.292 -27.027 1.00 32.00 N HETATM 2 CA PCA H 1 33.087 -22.724 -28.357 1.00 27.10 C HETATM 3 CB PCA H 1 34.295 -23.232 -29.153 1.00 35.70 C HETATM 4 CG PCA H 1 35.549 -22.914 -28.350 1.00 21.87 C HETATM 5 CD PCA H 1 34.972 -22.418 -27.046 1.00 39.45 C HETATM 6 OE PCA H 1 35.689 -22.137 -26.080 1.00 44.40 O HETATM 7 C PCA H 1 31.927 -23.738 -28.312 1.00 24.05 C HETATM 8 O PCA H 1 31.355 -24.102 -29.344 1.00 26.81 O