HEADER SIGNALING PROTEIN 21-MAY-13 4KU8 TITLE STRUCTURES OF PKGI REVEAL A CGMP-SELECTIVE ACTIVATION MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CARBOXYL CYCLIC NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES COMPND 5 204-354; COMPND 6 SYNONYM: CGK 1, CGK1, CGMP-DEPENDENT PROTEIN KINASE I, CGKI; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQTEV KEYWDS CYCLIC NUCLEOTIDE BINDING DOMAIN, CGMP, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.Y.HUANG,J.J.KIM,A.S.REGER,R.LORENZ,E.W.MOON,D.E.CASTEEL,B.SANKARAN, AUTHOR 2 F.W.HERBERG,C.KIM REVDAT 4 28-FEB-24 4KU8 1 REMARK SEQADV REVDAT 3 15-NOV-17 4KU8 1 REMARK REVDAT 2 29-JAN-14 4KU8 1 JRNL REVDAT 1 15-JAN-14 4KU8 0 JRNL AUTH G.Y.HUANG,J.J.KIM,A.S.REGER,R.LORENZ,E.W.MOON,C.ZHAO, JRNL AUTH 2 D.E.CASTEEL,D.BERTINETTI,B.VANSCHOUWEN,R.SELVARATNAM, JRNL AUTH 3 J.W.PFLUGRATH,B.SANKARAN,G.MELACINI,F.W.HERBERG,C.KIM JRNL TITL STRUCTURAL BASIS FOR CYCLIC-NUCLEOTIDE SELECTIVITY AND JRNL TITL 2 CGMP-SELECTIVE ACTIVATION OF PKG I. JRNL REF STRUCTURE V. 22 116 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24239458 JRNL DOI 10.1016/J.STR.2013.09.021 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1118 - 4.6840 0.97 2787 148 0.2035 0.2228 REMARK 3 2 4.6840 - 3.7193 1.00 2729 142 0.1576 0.2186 REMARK 3 3 3.7193 - 3.2496 1.00 2706 143 0.1907 0.2215 REMARK 3 4 3.2496 - 2.9527 1.00 2708 146 0.2095 0.2670 REMARK 3 5 2.9527 - 2.7411 1.00 2671 135 0.1977 0.2377 REMARK 3 6 2.7411 - 2.5796 1.00 2676 141 0.2037 0.2680 REMARK 3 7 2.5796 - 2.4504 1.00 2640 136 0.2118 0.2984 REMARK 3 8 2.4504 - 2.3438 1.00 2682 141 0.2136 0.2881 REMARK 3 9 2.3438 - 2.2536 1.00 2629 134 0.2199 0.2548 REMARK 3 10 2.2536 - 2.1758 1.00 2670 139 0.2243 0.2684 REMARK 3 11 2.1758 - 2.1078 1.00 2632 137 0.2154 0.2898 REMARK 3 12 2.1078 - 2.0476 1.00 2659 143 0.2283 0.2838 REMARK 3 13 2.0476 - 1.9940 0.93 2449 127 0.2338 0.2733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.48470 REMARK 3 B22 (A**2) : 4.48470 REMARK 3 B33 (A**2) : -8.96940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3001 REMARK 3 ANGLE : 0.980 4066 REMARK 3 CHIRALITY : 0.072 465 REMARK 3 PLANARITY : 0.004 531 REMARK 3 DIHEDRAL : 15.969 1071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 217:232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2929 36.5138 -17.8799 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.1902 REMARK 3 T33: 0.2879 T12: -0.0089 REMARK 3 T13: -0.0017 T23: 0.1320 REMARK 3 L TENSOR REMARK 3 L11: 6.5650 L22: 6.9802 REMARK 3 L33: 5.1218 L12: 4.5341 REMARK 3 L13: 0.4653 L23: 2.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.3750 S12: -0.4435 S13: -0.4099 REMARK 3 S21: 0.3175 S22: -0.5601 S23: -0.2912 REMARK 3 S31: -0.2675 S32: 0.1404 S33: 0.0872 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 233:241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7670 27.7350 -28.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.7232 T22: 0.1704 REMARK 3 T33: 0.4134 T12: 0.1130 REMARK 3 T13: 0.0544 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.3604 L22: 8.0080 REMARK 3 L33: 4.6354 L12: -1.5946 REMARK 3 L13: 1.9095 L23: -5.9190 REMARK 3 S TENSOR REMARK 3 S11: 0.1306 S12: 0.1968 S13: -1.3502 REMARK 3 S21: -1.4728 S22: -0.0014 S23: -0.1441 REMARK 3 S31: 1.9937 S32: 0.5898 S33: -0.0034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 242:249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2490 37.8432 -27.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.2458 REMARK 3 T33: 0.2789 T12: -0.0184 REMARK 3 T13: 0.0593 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 2.1858 L22: 8.9811 REMARK 3 L33: 2.0490 L12: -4.2291 REMARK 3 L13: -0.1515 L23: 1.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.1754 S12: 0.7356 S13: 0.5176 REMARK 3 S21: -0.6258 S22: -0.2643 S23: -0.5831 REMARK 3 S31: -0.3431 S32: 0.1747 S33: 0.0925 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 250:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5689 36.1421 -13.6677 REMARK 3 T TENSOR REMARK 3 T11: 0.4242 T22: 0.2608 REMARK 3 T33: 0.3045 T12: 0.0624 REMARK 3 T13: 0.0911 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 9.5665 L22: 8.9443 REMARK 3 L33: 4.6693 L12: 8.7162 REMARK 3 L13: -6.6721 L23: -6.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.9035 S12: 0.1378 S13: 0.5493 REMARK 3 S21: 1.1123 S22: 0.0498 S23: 0.5749 REMARK 3 S31: -1.1809 S32: -0.1454 S33: -1.0706 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 258:285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.8888 24.8657 -13.0621 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.2508 REMARK 3 T33: 0.1117 T12: -0.0412 REMARK 3 T13: -0.0025 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 2.5036 L22: 4.1454 REMARK 3 L33: 4.2378 L12: 0.4055 REMARK 3 L13: -0.3322 L23: -0.8320 REMARK 3 S TENSOR REMARK 3 S11: 0.2199 S12: 0.0290 S13: -0.0601 REMARK 3 S21: 0.1107 S22: -0.1935 S23: 0.2420 REMARK 3 S31: -0.1899 S32: -0.8504 S33: -0.1022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 286:293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.4389 9.7462 -10.8451 REMARK 3 T TENSOR REMARK 3 T11: 0.4452 T22: 0.9617 REMARK 3 T33: 0.4359 T12: -0.2601 REMARK 3 T13: -0.1341 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 0.5034 L22: 6.8068 REMARK 3 L33: 3.6462 L12: -1.6366 REMARK 3 L13: -0.8631 L23: 1.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.5647 S12: 0.8736 S13: -0.4344 REMARK 3 S21: -0.1356 S22: -0.5276 S23: 1.8561 REMARK 3 S31: 0.9173 S32: -2.1543 S33: 0.0158 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 294:318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6758 21.8292 -19.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.2412 REMARK 3 T33: 0.1503 T12: -0.0356 REMARK 3 T13: -0.0383 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 5.2843 L22: 3.5085 REMARK 3 L33: 1.0974 L12: 1.9159 REMARK 3 L13: 0.2294 L23: -0.3267 REMARK 3 S TENSOR REMARK 3 S11: 0.1397 S12: 0.2599 S13: 0.1941 REMARK 3 S21: -0.2467 S22: -0.0945 S23: 0.1385 REMARK 3 S31: 0.1773 S32: -0.2717 S33: -0.0354 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 319:344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8718 32.2113 -21.6058 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.2133 REMARK 3 T33: 0.1987 T12: 0.0712 REMARK 3 T13: 0.0170 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.6510 L22: 4.3277 REMARK 3 L33: 7.7950 L12: 1.8973 REMARK 3 L13: -1.0848 L23: -4.5200 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.0486 S13: 0.0598 REMARK 3 S21: -0.0006 S22: 0.2109 S23: 0.1781 REMARK 3 S31: -0.2723 S32: -0.5861 S33: -0.2593 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 345:366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9187 20.7659 -36.1277 REMARK 3 T TENSOR REMARK 3 T11: 0.5600 T22: 0.3105 REMARK 3 T33: 0.1991 T12: 0.1167 REMARK 3 T13: 0.0747 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.7218 L22: 4.1626 REMARK 3 L33: 4.5081 L12: 5.8814 REMARK 3 L13: -4.4376 L23: -3.6538 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.5458 S13: -0.4550 REMARK 3 S21: 0.0242 S22: -0.4208 S23: -0.0835 REMARK 3 S31: 0.9689 S32: 0.5456 S33: 0.3879 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 225:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6484 54.6383 -13.9533 REMARK 3 T TENSOR REMARK 3 T11: 0.8296 T22: 0.7094 REMARK 3 T33: 0.7256 T12: 0.1113 REMARK 3 T13: 0.4173 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.4331 L22: 1.7427 REMARK 3 L33: 3.9045 L12: 0.7302 REMARK 3 L13: -0.5090 L23: 2.2100 REMARK 3 S TENSOR REMARK 3 S11: -0.2283 S12: -0.7972 S13: 0.0405 REMARK 3 S21: 1.0923 S22: -0.8266 S23: 1.5625 REMARK 3 S31: 0.8790 S32: -0.7054 S33: 0.3524 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 258:338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1858 56.7441 -20.2795 REMARK 3 T TENSOR REMARK 3 T11: 0.6128 T22: 0.0654 REMARK 3 T33: 0.4154 T12: -0.0863 REMARK 3 T13: 0.1915 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.7877 L22: 2.5804 REMARK 3 L33: 2.2291 L12: 0.2739 REMARK 3 L13: 0.7819 L23: 0.0513 REMARK 3 S TENSOR REMARK 3 S11: 0.2989 S12: 0.0039 S13: 1.1656 REMARK 3 S21: 0.4201 S22: -0.2014 S23: 0.4208 REMARK 3 S31: -1.0809 S32: 0.3092 S33: 0.0014 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN C AND RESID 217:278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5658 23.6499 -4.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.2065 REMARK 3 T33: 0.2767 T12: -0.0928 REMARK 3 T13: -0.1422 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 6.3170 L22: 0.0848 REMARK 3 L33: 0.1031 L12: 0.6934 REMARK 3 L13: 0.9164 L23: 0.0928 REMARK 3 S TENSOR REMARK 3 S11: 0.3954 S12: -0.3946 S13: -0.2511 REMARK 3 S21: 0.1633 S22: -0.1610 S23: 0.0242 REMARK 3 S31: 0.0886 S32: -0.0316 S33: -0.1710 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN C AND RESID 279:344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2199 26.5342 0.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.5315 T22: 0.2033 REMARK 3 T33: 0.3050 T12: -0.1781 REMARK 3 T13: -0.1919 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 6.2419 L22: 1.9083 REMARK 3 L33: 2.5899 L12: 0.1209 REMARK 3 L13: -1.1095 L23: -0.3029 REMARK 3 S TENSOR REMARK 3 S11: 0.4159 S12: -0.6254 S13: -0.3605 REMARK 3 S21: 0.0823 S22: -0.0921 S23: 0.1648 REMARK 3 S31: 0.3279 S32: 0.1131 S33: -0.2237 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN A AND RESID 401:402 ) OR ( CHAIN B AND RESID REMARK 3 401:401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7462 34.4442 -25.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.3834 T22: 0.5572 REMARK 3 T33: 1.2875 T12: -0.1169 REMARK 3 T13: -0.0631 T23: 0.2755 REMARK 3 L TENSOR REMARK 3 L11: 0.3806 L22: 0.9486 REMARK 3 L33: 0.1859 L12: 0.5827 REMARK 3 L13: -0.2001 L23: -0.2267 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.1364 S13: -0.3441 REMARK 3 S21: 0.0626 S22: -0.2146 S23: 0.0270 REMARK 3 S31: -0.0610 S32: 0.2505 S33: -0.1737 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.994 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG BUFFER, 25% PEG1500, PH 5.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.00033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.00067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.00067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.00033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 367 REMARK 465 ALA A 368 REMARK 465 ASN A 369 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 THR B 219 REMARK 465 GLY B 220 REMARK 465 LEU B 221 REMARK 465 ILE B 222 REMARK 465 LYS B 223 REMARK 465 HIS B 224 REMARK 465 PRO B 235 REMARK 465 THR B 236 REMARK 465 PHE B 237 REMARK 465 GLN B 238 REMARK 465 SER B 239 REMARK 465 LEU B 240 REMARK 465 LEU B 339 REMARK 465 ILE B 340 REMARK 465 GLY B 341 REMARK 465 GLY B 342 REMARK 465 LEU B 343 REMARK 465 ASP B 344 REMARK 465 ASP B 345 REMARK 465 VAL B 346 REMARK 465 SER B 347 REMARK 465 ASN B 348 REMARK 465 LYS B 349 REMARK 465 ALA B 350 REMARK 465 TYR B 351 REMARK 465 GLU B 352 REMARK 465 ASP B 353 REMARK 465 ALA B 354 REMARK 465 GLU B 355 REMARK 465 ALA B 356 REMARK 465 LYS B 357 REMARK 465 ALA B 358 REMARK 465 LYS B 359 REMARK 465 TYR B 360 REMARK 465 GLU B 361 REMARK 465 ALA B 362 REMARK 465 GLU B 363 REMARK 465 ALA B 364 REMARK 465 ALA B 365 REMARK 465 PHE B 366 REMARK 465 PHE B 367 REMARK 465 ALA B 368 REMARK 465 ASN B 369 REMARK 465 SER C 288 REMARK 465 PRO C 289 REMARK 465 SER C 290 REMARK 465 GLU C 291 REMARK 465 ASP C 292 REMARK 465 PRO C 293 REMARK 465 ASP C 345 REMARK 465 VAL C 346 REMARK 465 SER C 347 REMARK 465 ASN C 348 REMARK 465 LYS C 349 REMARK 465 ALA C 350 REMARK 465 TYR C 351 REMARK 465 GLU C 352 REMARK 465 ASP C 353 REMARK 465 ALA C 354 REMARK 465 GLU C 355 REMARK 465 ALA C 356 REMARK 465 LYS C 357 REMARK 465 ALA C 358 REMARK 465 LYS C 359 REMARK 465 TYR C 360 REMARK 465 GLU C 361 REMARK 465 ALA C 362 REMARK 465 GLU C 363 REMARK 465 ALA C 364 REMARK 465 ALA C 365 REMARK 465 PHE C 366 REMARK 465 PHE C 367 REMARK 465 ALA C 368 REMARK 465 ASN C 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 THR B 225 OG1 CG2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 SER B 233 OG REMARK 470 VAL B 234 CG1 CG2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 ILE B 244 CG1 CG2 CD1 REMARK 470 LEU B 245 CG CD1 CD2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 ASP B 250 CG OD1 OD2 REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 GLN B 311 CG CD OE1 NE2 REMARK 470 LYS B 337 CG CD CE NZ REMARK 470 HIS B 338 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 238 CG CD OE1 NE2 REMARK 470 ARG C 269 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 311 CG CD OE1 NE2 REMARK 470 LYS C 337 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 286 O HOH B 531 2.04 REMARK 500 N GLY A 217 O HOH A 554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 271 17.11 -142.15 REMARK 500 SER A 288 138.69 176.02 REMARK 500 GLU A 324 -173.16 178.14 REMARK 500 GLU B 243 36.83 -85.55 REMARK 500 ASP B 287 -120.13 47.23 REMARK 500 GLU B 324 -169.53 -174.21 REMARK 500 PHE B 336 71.00 -67.42 REMARK 500 LEU C 296 -69.46 -104.34 REMARK 500 GLU C 324 -159.45 -174.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KU7 RELATED DB: PDB DBREF 4KU8 A 219 369 UNP Q13976 KGP1_HUMAN 204 354 DBREF 4KU8 B 219 369 UNP Q13976 KGP1_HUMAN 204 354 DBREF 4KU8 C 219 369 UNP Q13976 KGP1_HUMAN 204 354 SEQADV 4KU8 GLY A 217 UNP Q13976 EXPRESSION TAG SEQADV 4KU8 SER A 218 UNP Q13976 EXPRESSION TAG SEQADV 4KU8 GLY B 217 UNP Q13976 EXPRESSION TAG SEQADV 4KU8 SER B 218 UNP Q13976 EXPRESSION TAG SEQADV 4KU8 GLY C 217 UNP Q13976 EXPRESSION TAG SEQADV 4KU8 SER C 218 UNP Q13976 EXPRESSION TAG SEQRES 1 A 153 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 A 153 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 A 153 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 A 153 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 A 153 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 A 153 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 A 153 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 A 153 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 A 153 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 A 153 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 A 153 SER ASN LYS ALA TYR GLU ASP ALA GLU ALA LYS ALA LYS SEQRES 12 A 153 TYR GLU ALA GLU ALA ALA PHE PHE ALA ASN SEQRES 1 B 153 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 B 153 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 B 153 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 B 153 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 B 153 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 B 153 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 B 153 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 B 153 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 B 153 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 B 153 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 B 153 SER ASN LYS ALA TYR GLU ASP ALA GLU ALA LYS ALA LYS SEQRES 12 B 153 TYR GLU ALA GLU ALA ALA PHE PHE ALA ASN SEQRES 1 C 153 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 C 153 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 C 153 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 C 153 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 C 153 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 C 153 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 C 153 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 C 153 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 C 153 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 C 153 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 C 153 SER ASN LYS ALA TYR GLU ASP ALA GLU ALA LYS ALA LYS SEQRES 12 C 153 TYR GLU ALA GLU ALA ALA PHE PHE ALA ASN HET GLY A 401 5 HET GLY A 402 5 HET GLY B 401 5 HETNAM GLY GLYCINE FORMUL 4 GLY 3(C2 H5 N O2) FORMUL 7 HOH *344(H2 O) HELIX 1 1 SER A 218 VAL A 234 1 17 HELIX 2 2 PRO A 241 ASP A 250 1 10 HELIX 3 3 GLY A 306 GLN A 311 5 6 HELIX 4 4 ARG A 333 GLY A 341 1 9 HELIX 5 5 ASP A 344 ALA A 365 1 22 HELIX 6 6 GLU B 226 LYS B 232 1 7 HELIX 7 7 ILE B 244 ASP B 250 1 7 HELIX 8 8 GLY B 306 GLN B 311 5 6 HELIX 9 9 SER C 218 SER C 233 1 16 HELIX 10 10 VAL C 234 SER C 239 1 6 HELIX 11 11 PRO C 241 ASP C 250 1 10 HELIX 12 12 GLU C 307 GLY C 312 1 6 HELIX 13 13 ARG C 333 GLY C 342 1 10 SHEET 1 A 4 GLU A 253 TYR A 257 0 SHEET 2 A 4 VAL A 326 ASP A 332 -1 O CYS A 328 N THR A 255 SHEET 3 A 4 THR A 272 LYS A 278 -1 N ILE A 275 O LEU A 329 SHEET 4 A 4 TRP A 304 PHE A 305 -1 O PHE A 305 N PHE A 274 SHEET 1 B 4 TYR A 262 ILE A 264 0 SHEET 2 B 4 ASN A 319 ALA A 322 -1 O VAL A 320 N ILE A 263 SHEET 3 B 4 VAL A 281 ARG A 285 -1 N ASN A 282 O ILE A 321 SHEET 4 B 4 VAL A 294 LEU A 299 -1 O ARG A 297 N VAL A 283 SHEET 1 C 4 GLU B 253 TYR B 257 0 SHEET 2 C 4 VAL B 326 ASP B 332 -1 O VAL B 326 N TYR B 257 SHEET 3 C 4 THR B 272 LYS B 278 -1 N ILE B 275 O LEU B 329 SHEET 4 C 4 TRP B 304 PHE B 305 -1 O PHE B 305 N PHE B 274 SHEET 1 D 4 TYR B 262 ILE B 264 0 SHEET 2 D 4 ASN B 319 ALA B 322 -1 O VAL B 320 N ILE B 264 SHEET 3 D 4 VAL B 281 ARG B 285 -1 N THR B 284 O ASN B 319 SHEET 4 D 4 VAL B 294 LEU B 299 -1 O VAL B 294 N ARG B 285 SHEET 1 E 2 ARG B 269 GLY B 270 0 SHEET 2 E 2 ASP B 314 VAL B 315 -1 O ASP B 314 N GLY B 270 SHEET 1 F 4 GLU C 253 TYR C 257 0 SHEET 2 F 4 VAL C 326 ASP C 332 -1 O VAL C 330 N GLU C 253 SHEET 3 F 4 THR C 272 LYS C 278 -1 N ILE C 275 O LEU C 329 SHEET 4 F 4 TRP C 304 PHE C 305 -1 O PHE C 305 N PHE C 274 SHEET 1 G 4 TYR C 262 ILE C 264 0 SHEET 2 G 4 ASN C 319 ALA C 322 -1 O VAL C 320 N ILE C 263 SHEET 3 G 4 VAL C 281 THR C 284 -1 N THR C 284 O ASN C 319 SHEET 4 G 4 PHE C 295 LEU C 299 -1 O LEU C 296 N VAL C 283 SITE 1 AC1 5 GLU A 226 GLU A 229 PHE A 230 HOH A 549 SITE 2 AC1 5 HOH A 572 SITE 1 AC2 4 VAL A 346 ALA A 350 HOH A 558 HOH A 628 SITE 1 AC3 6 GLY A 217 SER A 218 LEU A 221 ARG B 297 SITE 2 AC3 6 THR B 298 HOH B 534 CRYST1 78.766 78.766 147.001 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012696 0.007330 0.000000 0.00000 SCALE2 0.000000 0.014660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006803 0.00000