HEADER PROTEIN TRANSPORT 22-MAY-13 4KV2 TITLE UBIQUITIN-LIKE DOMAIN OF THE MYCOBACTERIUM TUBERCULOSIS TYPE VII TITLE 2 SECRETION SYSTEM PROTEIN ECCD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESX-1 SECRETION SYSTEM PROTEIN ECCD1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-109; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3877, RVBD_3877; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ESX-1, ESX, SNM4, UBIQUITIN, YUKD, PF08817, MEMBRANE PROTEIN, PROTEIN KEYWDS 2 SECRETION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,T.J.EVANS REVDAT 3 20-SEP-23 4KV2 1 SEQADV REVDAT 2 23-MAR-16 4KV2 1 JRNL REVDAT 1 09-APR-14 4KV2 0 JRNL AUTH J.M.WAGNER,S.CHAN,T.J.EVANS,S.KAHNG,J.KIM,M.A.ARBING, JRNL AUTH 2 D.EISENBERG,K.V.KOROTKOV JRNL TITL STRUCTURES OF ECCB1 AND ECCD1 FROM THE CORE COMPLEX OF THE JRNL TITL 2 MYCOBACTERIAL ESX-1 TYPE VII SECRETION SYSTEM. JRNL REF BMC STRUCT.BIOL. V. 16 5 2016 JRNL REFN ESSN 1472-6807 JRNL PMID 26922638 JRNL DOI 10.1186/S12900-016-0056-6 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : -0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1363 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1320 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1871 ; 1.331 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3041 ; 0.738 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 180 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;23.906 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;13.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1524 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 261 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 720 ; 0.420 ; 0.942 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 719 ; 0.420 ; 0.941 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 0.698 ; 1.411 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3280 21.1670 14.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1765 REMARK 3 T33: 0.0569 T12: -0.0751 REMARK 3 T13: -0.0271 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.8150 L22: 15.2598 REMARK 3 L33: 4.9385 L12: -1.6155 REMARK 3 L13: -1.5155 L23: 3.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0109 S13: 0.0254 REMARK 3 S21: 0.5802 S22: -0.0519 S23: -0.2895 REMARK 3 S31: 0.2766 S32: -0.1576 S33: 0.0536 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3900 26.2790 13.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1839 REMARK 3 T33: 0.0695 T12: -0.0497 REMARK 3 T13: -0.0097 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.9553 L22: 16.0120 REMARK 3 L33: 2.2780 L12: -2.7866 REMARK 3 L13: 1.0740 L23: -1.5606 REMARK 3 S TENSOR REMARK 3 S11: 0.1764 S12: -0.0898 S13: 0.1103 REMARK 3 S21: -0.0513 S22: -0.3270 S23: 0.0508 REMARK 3 S31: 0.0117 S32: -0.1535 S33: 0.1506 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0940 30.0450 4.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.1276 REMARK 3 T33: 0.0364 T12: -0.0276 REMARK 3 T13: 0.0053 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 15.6702 L22: 7.7910 REMARK 3 L33: 2.4537 L12: -4.5633 REMARK 3 L13: 1.2735 L23: 1.9216 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.4626 S13: 0.3220 REMARK 3 S21: -0.3570 S22: -0.0400 S23: 0.1300 REMARK 3 S31: -0.0700 S32: 0.1054 S33: 0.1604 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9830 18.6130 8.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1446 REMARK 3 T33: 0.2495 T12: -0.0153 REMARK 3 T13: -0.0288 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 11.0295 L22: 36.6631 REMARK 3 L33: 8.3949 L12: -7.3054 REMARK 3 L13: 8.5392 L23: -13.1534 REMARK 3 S TENSOR REMARK 3 S11: 0.2278 S12: -0.0536 S13: -0.5434 REMARK 3 S21: 0.3211 S22: -0.1461 S23: -0.8450 REMARK 3 S31: 0.0412 S32: 0.0004 S33: -0.0817 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1670 6.8800 9.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.7188 T22: 0.1406 REMARK 3 T33: 0.7079 T12: 0.0475 REMARK 3 T13: -0.0072 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 81.5838 L22: 4.4509 REMARK 3 L33: 13.8052 L12: 16.3958 REMARK 3 L13: 7.5769 L23: -2.3567 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: 0.0857 S13: -3.6858 REMARK 3 S21: -0.5774 S22: -0.1827 S23: -0.9721 REMARK 3 S31: 2.0000 S32: 0.6799 S33: 0.3348 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2260 14.3440 0.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.3526 REMARK 3 T33: 0.2066 T12: 0.0097 REMARK 3 T13: 0.0613 T23: -0.1369 REMARK 3 L TENSOR REMARK 3 L11: 6.8417 L22: 6.7212 REMARK 3 L33: 29.1172 L12: 6.3952 REMARK 3 L13: -8.6737 L23: -11.2222 REMARK 3 S TENSOR REMARK 3 S11: -0.2033 S12: 0.0892 S13: -0.5618 REMARK 3 S21: -0.3997 S22: -0.1310 S23: -0.4289 REMARK 3 S31: 0.9290 S32: -0.2183 S33: 0.3343 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0800 21.6000 2.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1073 REMARK 3 T33: 0.0474 T12: -0.0091 REMARK 3 T13: -0.0260 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 7.7050 L22: 4.2498 REMARK 3 L33: 2.9954 L12: 1.5634 REMARK 3 L13: 0.4500 L23: -0.1006 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.0041 S13: 0.0748 REMARK 3 S21: -0.2686 S22: -0.1259 S23: 0.1491 REMARK 3 S31: 0.2506 S32: -0.0342 S33: 0.0218 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5410 31.3150 5.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1158 REMARK 3 T33: 0.1467 T12: 0.0241 REMARK 3 T13: -0.0528 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 7.5837 L22: 7.0897 REMARK 3 L33: 9.6456 L12: 3.0300 REMARK 3 L13: -3.4444 L23: 0.6422 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.0240 S13: 0.3622 REMARK 3 S21: -0.2669 S22: -0.2117 S23: 0.6466 REMARK 3 S31: -0.3277 S32: -0.6044 S33: 0.1857 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3330 21.0930 9.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1388 REMARK 3 T33: 0.0793 T12: -0.0170 REMARK 3 T13: -0.0228 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.9628 L22: 5.8788 REMARK 3 L33: 18.1033 L12: 0.8189 REMARK 3 L13: -2.4826 L23: 4.2809 REMARK 3 S TENSOR REMARK 3 S11: 0.2330 S12: 0.1115 S13: -0.0627 REMARK 3 S21: -0.0959 S22: -0.2852 S23: 0.0572 REMARK 3 S31: 0.1163 S32: -0.5256 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9030 38.0510 19.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1652 REMARK 3 T33: 0.0819 T12: -0.0223 REMARK 3 T13: -0.0255 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.1135 L22: 15.9329 REMARK 3 L33: 2.1011 L12: 0.9777 REMARK 3 L13: 0.7165 L23: -3.1208 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.1322 S13: 0.0787 REMARK 3 S21: -0.2243 S22: 0.0019 S23: -0.2701 REMARK 3 S31: 0.0152 S32: -0.0562 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3530 32.5100 17.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1556 REMARK 3 T33: 0.0703 T12: -0.0252 REMARK 3 T13: -0.0012 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.3770 L22: 12.8379 REMARK 3 L33: 1.6515 L12: -2.3848 REMARK 3 L13: 0.6281 L23: 2.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: -0.0310 S13: 0.0069 REMARK 3 S21: -0.1309 S22: -0.0688 S23: -0.0769 REMARK 3 S31: -0.0110 S32: 0.0221 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8010 31.4420 8.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1193 REMARK 3 T33: 0.1065 T12: -0.0466 REMARK 3 T13: 0.0262 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 6.9149 L22: 8.1462 REMARK 3 L33: 6.0414 L12: -3.4616 REMARK 3 L13: 5.7008 L23: -4.4095 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: 0.4466 S13: 0.0188 REMARK 3 S21: -0.3091 S22: 0.0659 S23: -0.4854 REMARK 3 S31: -0.0199 S32: 0.3817 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6830 43.1030 9.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.1027 REMARK 3 T33: 0.1273 T12: -0.0227 REMARK 3 T13: -0.1272 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 13.9286 L22: 56.8049 REMARK 3 L33: 6.5919 L12: -18.8225 REMARK 3 L13: -5.5925 L23: 8.3317 REMARK 3 S TENSOR REMARK 3 S11: -0.2527 S12: 0.1985 S13: 0.0931 REMARK 3 S21: -0.9651 S22: 0.0767 S23: 1.1206 REMARK 3 S31: -0.3620 S32: -0.3256 S33: 0.1760 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7450 53.1500 13.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.1224 REMARK 3 T33: 0.3713 T12: -0.0456 REMARK 3 T13: 0.0529 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 51.9474 L22: 0.5410 REMARK 3 L33: 14.4798 L12: -5.2244 REMARK 3 L13: 25.1847 L23: -2.3830 REMARK 3 S TENSOR REMARK 3 S11: -1.0498 S12: -0.2860 S13: 1.0552 REMARK 3 S21: 0.1013 S22: 0.0544 S23: -0.0400 REMARK 3 S31: -0.8936 S32: 0.1316 S33: 0.9954 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8280 46.8670 6.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.0842 REMARK 3 T33: 0.1349 T12: -0.0584 REMARK 3 T13: 0.0309 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 6.6176 L22: 28.5798 REMARK 3 L33: 12.2335 L12: -6.2167 REMARK 3 L13: -2.4548 L23: 6.9353 REMARK 3 S TENSOR REMARK 3 S11: 0.7187 S12: 0.3824 S13: 0.0538 REMARK 3 S21: -2.3350 S22: -0.4804 S23: 0.0817 REMARK 3 S31: -0.8889 S32: 0.0156 S33: -0.2384 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2420 39.3350 11.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1231 REMARK 3 T33: 0.2407 T12: -0.0552 REMARK 3 T13: 0.1390 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 8.6218 L22: 11.3153 REMARK 3 L33: 8.8087 L12: -3.0235 REMARK 3 L13: 2.2850 L23: 2.2895 REMARK 3 S TENSOR REMARK 3 S11: 0.3881 S12: 0.6690 S13: 0.5387 REMARK 3 S21: -0.9238 S22: 0.0377 S23: -0.9054 REMARK 3 S31: -0.4670 S32: 0.3321 S33: -0.4258 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4700 32.2460 13.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.1844 REMARK 3 T33: 0.4356 T12: 0.0029 REMARK 3 T13: 0.0366 T23: -0.1835 REMARK 3 L TENSOR REMARK 3 L11: 5.6151 L22: 15.5246 REMARK 3 L33: 7.1577 L12: 2.8457 REMARK 3 L13: -2.6717 L23: 3.0944 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.0139 S13: 0.1910 REMARK 3 S21: -0.1902 S22: 0.6429 S23: -2.1133 REMARK 3 S31: 0.0253 S32: 0.6011 S33: -0.7355 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9320 34.2640 19.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.1234 REMARK 3 T33: 0.1588 T12: -0.0262 REMARK 3 T13: -0.0276 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.0545 L22: 6.2130 REMARK 3 L33: 7.4407 L12: -0.2880 REMARK 3 L13: 0.3201 L23: 3.4962 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.0597 S13: -0.0625 REMARK 3 S21: 0.3482 S22: 0.1306 S23: -0.5362 REMARK 3 S31: -0.0478 S32: 0.2176 S33: -0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4KV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15843 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4KV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 186.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.00667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.51000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.50333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 232.51667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 186.01333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.00667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.50333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 139.51000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 232.51667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KV3 RELATED DB: PDB DBREF 4KV2 A 21 109 UNP I6X8K0 I6X8K0_MYCTU 21 109 DBREF 4KV2 B 21 109 UNP I6X8K0 I6X8K0_MYCTU 21 109 SEQADV 4KV2 GLY A 18 UNP I6X8K0 EXPRESSION TAG SEQADV 4KV2 ALA A 19 UNP I6X8K0 EXPRESSION TAG SEQADV 4KV2 MET A 20 UNP I6X8K0 EXPRESSION TAG SEQADV 4KV2 GLY B 18 UNP I6X8K0 EXPRESSION TAG SEQADV 4KV2 ALA B 19 UNP I6X8K0 EXPRESSION TAG SEQADV 4KV2 MET B 20 UNP I6X8K0 EXPRESSION TAG SEQRES 1 A 92 GLY ALA MET ALA THR THR ARG VAL THR ILE LEU THR GLY SEQRES 2 A 92 ARG ARG MET THR ASP LEU VAL LEU PRO ALA ALA VAL PRO SEQRES 3 A 92 MET GLU THR TYR ILE ASP ASP THR VAL ALA VAL LEU SER SEQRES 4 A 92 GLU VAL LEU GLU ASP THR PRO ALA ASP VAL LEU GLY GLY SEQRES 5 A 92 PHE ASP PHE THR ALA GLN GLY VAL TRP ALA PHE ALA ARG SEQRES 6 A 92 PRO GLY SER PRO PRO LEU LYS LEU ASP GLN SER LEU ASP SEQRES 7 A 92 ASP ALA GLY VAL VAL ASP GLY SER LEU LEU THR LEU VAL SEQRES 8 A 92 SER SEQRES 1 B 92 GLY ALA MET ALA THR THR ARG VAL THR ILE LEU THR GLY SEQRES 2 B 92 ARG ARG MET THR ASP LEU VAL LEU PRO ALA ALA VAL PRO SEQRES 3 B 92 MET GLU THR TYR ILE ASP ASP THR VAL ALA VAL LEU SER SEQRES 4 B 92 GLU VAL LEU GLU ASP THR PRO ALA ASP VAL LEU GLY GLY SEQRES 5 B 92 PHE ASP PHE THR ALA GLN GLY VAL TRP ALA PHE ALA ARG SEQRES 6 B 92 PRO GLY SER PRO PRO LEU LYS LEU ASP GLN SER LEU ASP SEQRES 7 B 92 ASP ALA GLY VAL VAL ASP GLY SER LEU LEU THR LEU VAL SEQRES 8 B 92 SER FORMUL 3 HOH *186(H2 O) HELIX 1 1 PRO A 43 THR A 46 5 4 HELIX 2 2 TYR A 47 LEU A 59 1 13 HELIX 3 3 PRO B 43 THR B 46 5 4 HELIX 4 4 TYR B 47 LEU B 59 1 13 SHEET 1 A 4 ARG A 32 PRO A 39 0 SHEET 2 A 4 THR A 22 THR A 29 -1 N VAL A 25 O LEU A 36 SHEET 3 A 4 SER A 103 VAL A 108 1 O LEU A 105 N LEU A 28 SHEET 4 A 4 ALA A 79 ALA A 81 -1 N ALA A 81 O THR A 106 SHEET 1 B 4 ARG B 32 PRO B 39 0 SHEET 2 B 4 THR B 22 THR B 29 -1 N ILE B 27 O THR B 34 SHEET 3 B 4 SER B 103 VAL B 108 1 O LEU B 105 N LEU B 28 SHEET 4 B 4 ALA B 79 ALA B 81 -1 N ALA B 81 O THR B 106 CRYST1 46.720 46.720 279.020 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021404 0.012358 0.000000 0.00000 SCALE2 0.000000 0.024715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003584 0.00000