HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 23-MAY-13 4KW5 TITLE M. TUBERCULOSIS DPRE1 IN COMPLEX WITH INHIBITOR TCA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DPRE1; COMPND 5 EC: 1.1.98.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3790, RVBD_3790; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA/BETA FOLD, OXIDOREDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BATT,G.S.BESRA,K.FUTTERER REVDAT 3 20-SEP-23 4KW5 1 REMARK REVDAT 2 17-JUL-13 4KW5 1 JRNL REVDAT 1 10-JUL-13 4KW5 0 JRNL AUTH F.WANG,D.SAMBANDAN,R.HALDER,J.WANG,S.M.BATT,B.WEINRICK, JRNL AUTH 2 I.AHMAD,P.YANG,Y.ZHANG,J.KIM,M.HASSANI,S.HUSZAR,C.TREFZER, JRNL AUTH 3 Z.MA,T.KANEKO,K.E.MDLULI,S.FRANZBLAU,A.K.CHATTERJEE, JRNL AUTH 4 K.JOHNSON,K.MIKUSOVA,G.S.BESRA,K.FUTTERER,W.R.JACOBS, JRNL AUTH 5 P.G.SCHULTZ JRNL TITL IDENTIFICATION OF A SMALL MOLECULE WITH ACTIVITY AGAINST JRNL TITL 2 DRUG-RESISTANT AND PERSISTENT TUBERCULOSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E2510 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23776209 JRNL DOI 10.1073/PNAS.1309171110 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.5466 - 5.8084 1.00 2747 150 0.1675 0.2065 REMARK 3 2 5.8084 - 4.6107 1.00 2707 155 0.1410 0.1727 REMARK 3 3 4.6107 - 4.0280 1.00 2686 147 0.1340 0.1954 REMARK 3 4 4.0280 - 3.6598 1.00 2669 146 0.1780 0.2379 REMARK 3 5 3.6598 - 3.3975 1.00 2659 151 0.2094 0.2671 REMARK 3 6 3.3975 - 3.1972 1.00 2708 135 0.2239 0.3236 REMARK 3 7 3.1972 - 3.0371 1.00 2676 145 0.2252 0.3263 REMARK 3 8 3.0371 - 2.9049 1.00 2622 144 0.2519 0.3304 REMARK 3 9 2.9049 - 2.7930 1.00 2704 115 0.2590 0.3547 REMARK 3 10 2.7930 - 2.6967 1.00 2674 134 0.2893 0.3520 REMARK 3 11 2.6967 - 2.6123 0.99 2642 143 0.3166 0.3907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 33.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.74650 REMARK 3 B22 (A**2) : 5.40870 REMARK 3 B33 (A**2) : -10.15520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -11.22910 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6681 REMARK 3 ANGLE : 1.170 9105 REMARK 3 CHIRALITY : 0.076 1013 REMARK 3 PLANARITY : 0.006 1161 REMARK 3 DIHEDRAL : 16.150 2357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 7:461) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5381 -10.4206 36.5466 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1080 REMARK 3 T33: 0.1811 T12: 0.0001 REMARK 3 T13: 0.0475 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.2295 L22: 0.4836 REMARK 3 L33: 1.4151 L12: -0.3376 REMARK 3 L13: 1.1091 L23: -0.1614 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0949 S13: -0.0060 REMARK 3 S21: 0.0055 S22: 0.0369 S23: -0.0338 REMARK 3 S31: 0.0648 S32: -0.0347 S33: 0.0117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 7:461) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4188 -17.0496 0.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.2489 REMARK 3 T33: 0.2033 T12: 0.0165 REMARK 3 T13: 0.0195 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.8823 L22: 0.8589 REMARK 3 L33: 0.8631 L12: 0.8859 REMARK 3 L13: 1.2667 L23: 0.1944 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: 0.4293 S13: -0.0707 REMARK 3 S21: -0.0238 S22: 0.1586 S23: 0.0574 REMARK 3 S31: 0.1492 S32: 0.1656 S33: 0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 4 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESI 1:263) REMARK 3 SELECTION : CHAIN B AND (RESI 1:263) REMARK 3 ATOM PAIRS NUMBER : 1847 REMARK 3 RMSD : 0.046 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESI 305:313 REMARK 3 SELECTION : CHAIN B AND RESI 305:313 REMARK 3 ATOM PAIRS NUMBER : 72 REMARK 3 RMSD : 0.043 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESI 331:461 REMARK 3 SELECTION : CHAIN B AND RESI 331:461 REMARK 3 ATOM PAIRS NUMBER : 1057 REMARK 3 RMSD : 0.057 REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESI 900 REMARK 3 SELECTION : CHAIN B AND RESI 900 REMARK 3 ATOM PAIRS NUMBER : 53 REMARK 3 RMSD : 0.032 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31083 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 84.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99200 REMARK 200 R SYM FOR SHELL (I) : 0.99200 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FEH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 - 43% (W/V) POLYPROPYLENE GLYCOL REMARK 280 400, 0.1 M IMIDAZOLE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 269 REMARK 465 PRO A 270 REMARK 465 GLN A 271 REMARK 465 LEU A 272 REMARK 465 LEU A 273 REMARK 465 THR A 274 REMARK 465 LEU A 275 REMARK 465 PRO A 276 REMARK 465 ASP A 277 REMARK 465 VAL A 278 REMARK 465 PHE A 279 REMARK 465 PRO A 280 REMARK 465 ASN A 281 REMARK 465 GLY A 282 REMARK 465 LEU A 283 REMARK 465 LEU A 317 REMARK 465 ASP A 318 REMARK 465 MET A 319 REMARK 465 PHE A 320 REMARK 465 GLY A 321 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 ASN A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 TYR A 327 REMARK 465 GLY A 328 REMARK 465 PRO A 329 REMARK 465 ALA A 330 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 268 REMARK 465 ALA B 269 REMARK 465 PRO B 270 REMARK 465 GLN B 271 REMARK 465 LEU B 272 REMARK 465 LEU B 273 REMARK 465 THR B 274 REMARK 465 LEU B 275 REMARK 465 PRO B 276 REMARK 465 ASP B 277 REMARK 465 VAL B 278 REMARK 465 PHE B 279 REMARK 465 PRO B 280 REMARK 465 ASN B 281 REMARK 465 GLY B 282 REMARK 465 LEU B 283 REMARK 465 ALA B 284 REMARK 465 ASN B 285 REMARK 465 LYS B 286 REMARK 465 TYR B 287 REMARK 465 THR B 288 REMARK 465 PHE B 289 REMARK 465 GLY B 290 REMARK 465 PRO B 291 REMARK 465 ILE B 292 REMARK 465 GLY B 293 REMARK 465 LEU B 317 REMARK 465 ASP B 318 REMARK 465 MET B 319 REMARK 465 PHE B 320 REMARK 465 GLY B 321 REMARK 465 GLU B 322 REMARK 465 TRP B 323 REMARK 465 ASN B 324 REMARK 465 ARG B 325 REMARK 465 ALA B 326 REMARK 465 TYR B 327 REMARK 465 GLY B 328 REMARK 465 PRO B 329 REMARK 465 ALA B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 7 OG1 CG2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CE NZ REMARK 470 ARG A 41 NE CZ NH1 NH2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 PHE A 289 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 297 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 PHE A 362 CE1 CE2 CZ REMARK 470 THR B 7 OG1 CG2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 37 CE NZ REMARK 470 ARG B 41 NE CZ NH1 NH2 REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 GLU B 263 CG CD OE1 OE2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 PHE B 267 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 GLN B 334 CG CD OE1 NE2 REMARK 470 LYS B 349 CE NZ REMARK 470 LYS B 393 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 367 O1 GOL B 504 2.11 REMARK 500 O THR B 206 OH TYR B 297 2.13 REMARK 500 OG SER B 227 O2 GOL B 504 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 398 O LEU B 408 1656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 44.43 -78.73 REMARK 500 ASP A 130 59.26 38.86 REMARK 500 TYR A 314 -45.73 -139.12 REMARK 500 HIS A 315 77.44 -115.20 REMARK 500 TYR A 431 78.13 -119.02 REMARK 500 SER B 45 44.31 -79.13 REMARK 500 ASP B 130 59.52 37.01 REMARK 500 THR B 164 -169.99 -122.02 REMARK 500 TYR B 314 -84.05 -141.90 REMARK 500 ALA B 343 49.05 -75.16 REMARK 500 TYR B 431 79.57 -117.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1W6 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1W6 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FDO RELATED DB: PDB REMARK 900 RELATED ID: 4FDN RELATED DB: PDB REMARK 900 RELATED ID: 4FEH RELATED DB: PDB REMARK 900 RELATED ID: 4FDP RELATED DB: PDB REMARK 900 RELATED ID: 4FF6 RELATED DB: PDB DBREF 4KW5 A 1 461 UNP I6X8C4 I6X8C4_MYCTU 1 461 DBREF 4KW5 B 1 461 UNP I6X8C4 I6X8C4_MYCTU 1 461 SEQRES 1 A 461 MET LEU SER VAL GLY ALA THR THR THR ALA THR ARG LEU SEQRES 2 A 461 THR GLY TRP GLY ARG THR ALA PRO SER VAL ALA ASN VAL SEQRES 3 A 461 LEU ARG THR PRO ASP ALA GLU MET ILE VAL LYS ALA VAL SEQRES 4 A 461 ALA ARG VAL ALA GLU SER GLY GLY GLY ARG GLY ALA ILE SEQRES 5 A 461 ALA ARG GLY LEU GLY ARG SER TYR GLY ASP ASN ALA GLN SEQRES 6 A 461 ASN GLY GLY GLY LEU VAL ILE ASP MET THR PRO LEU ASN SEQRES 7 A 461 THR ILE HIS SER ILE ASP ALA ASP THR LYS LEU VAL ASP SEQRES 8 A 461 ILE ASP ALA GLY VAL ASN LEU ASP GLN LEU MET LYS ALA SEQRES 9 A 461 ALA LEU PRO PHE GLY LEU TRP VAL PRO VAL LEU PRO GLY SEQRES 10 A 461 THR ARG GLN VAL THR VAL GLY GLY ALA ILE ALA CYS ASP SEQRES 11 A 461 ILE HIS GLY LYS ASN HIS HIS SER ALA GLY SER PHE GLY SEQRES 12 A 461 ASN HIS VAL ARG SER MET ASP LEU LEU THR ALA ASP GLY SEQRES 13 A 461 GLU ILE ARG HIS LEU THR PRO THR GLY GLU ASP ALA GLU SEQRES 14 A 461 LEU PHE TRP ALA THR VAL GLY GLY ASN GLY LEU THR GLY SEQRES 15 A 461 ILE ILE MET ARG ALA THR ILE GLU MET THR PRO THR SER SEQRES 16 A 461 THR ALA TYR PHE ILE ALA ASP GLY ASP VAL THR ALA SER SEQRES 17 A 461 LEU ASP GLU THR ILE ALA LEU HIS SER ASP GLY SER GLU SEQRES 18 A 461 ALA ARG TYR THR TYR SER SER ALA TRP PHE ASP ALA ILE SEQRES 19 A 461 SER ALA PRO PRO LYS LEU GLY ARG ALA ALA VAL SER ARG SEQRES 20 A 461 GLY ARG LEU ALA THR VAL GLU GLN LEU PRO ALA LYS LEU SEQRES 21 A 461 ARG SER GLU PRO LEU LYS PHE ASP ALA PRO GLN LEU LEU SEQRES 22 A 461 THR LEU PRO ASP VAL PHE PRO ASN GLY LEU ALA ASN LYS SEQRES 23 A 461 TYR THR PHE GLY PRO ILE GLY GLU LEU TRP TYR ARG LYS SEQRES 24 A 461 SER GLY THR TYR ARG GLY LYS VAL GLN ASN LEU THR GLN SEQRES 25 A 461 PHE TYR HIS PRO LEU ASP MET PHE GLY GLU TRP ASN ARG SEQRES 26 A 461 ALA TYR GLY PRO ALA GLY PHE LEU GLN TYR GLN PHE VAL SEQRES 27 A 461 ILE PRO THR GLU ALA VAL ASP GLU PHE LYS LYS ILE ILE SEQRES 28 A 461 GLY VAL ILE GLN ALA SER GLY HIS TYR SER PHE LEU ASN SEQRES 29 A 461 VAL PHE LYS LEU PHE GLY PRO ARG ASN GLN ALA PRO LEU SEQRES 30 A 461 SER PHE PRO ILE PRO GLY TRP ASN ILE CYS VAL ASP PHE SEQRES 31 A 461 PRO ILE LYS ASP GLY LEU GLY LYS PHE VAL SER GLU LEU SEQRES 32 A 461 ASP ARG ARG VAL LEU GLU PHE GLY GLY ARG LEU TYR THR SEQRES 33 A 461 ALA LYS ASP SER ARG THR THR ALA GLU THR PHE HIS ALA SEQRES 34 A 461 MET TYR PRO ARG VAL ASP GLU TRP ILE SER VAL ARG ARG SEQRES 35 A 461 LYS VAL ASP PRO LEU ARG VAL PHE ALA SER ASP MET ALA SEQRES 36 A 461 ARG ARG LEU GLU LEU LEU SEQRES 1 B 461 MET LEU SER VAL GLY ALA THR THR THR ALA THR ARG LEU SEQRES 2 B 461 THR GLY TRP GLY ARG THR ALA PRO SER VAL ALA ASN VAL SEQRES 3 B 461 LEU ARG THR PRO ASP ALA GLU MET ILE VAL LYS ALA VAL SEQRES 4 B 461 ALA ARG VAL ALA GLU SER GLY GLY GLY ARG GLY ALA ILE SEQRES 5 B 461 ALA ARG GLY LEU GLY ARG SER TYR GLY ASP ASN ALA GLN SEQRES 6 B 461 ASN GLY GLY GLY LEU VAL ILE ASP MET THR PRO LEU ASN SEQRES 7 B 461 THR ILE HIS SER ILE ASP ALA ASP THR LYS LEU VAL ASP SEQRES 8 B 461 ILE ASP ALA GLY VAL ASN LEU ASP GLN LEU MET LYS ALA SEQRES 9 B 461 ALA LEU PRO PHE GLY LEU TRP VAL PRO VAL LEU PRO GLY SEQRES 10 B 461 THR ARG GLN VAL THR VAL GLY GLY ALA ILE ALA CYS ASP SEQRES 11 B 461 ILE HIS GLY LYS ASN HIS HIS SER ALA GLY SER PHE GLY SEQRES 12 B 461 ASN HIS VAL ARG SER MET ASP LEU LEU THR ALA ASP GLY SEQRES 13 B 461 GLU ILE ARG HIS LEU THR PRO THR GLY GLU ASP ALA GLU SEQRES 14 B 461 LEU PHE TRP ALA THR VAL GLY GLY ASN GLY LEU THR GLY SEQRES 15 B 461 ILE ILE MET ARG ALA THR ILE GLU MET THR PRO THR SER SEQRES 16 B 461 THR ALA TYR PHE ILE ALA ASP GLY ASP VAL THR ALA SER SEQRES 17 B 461 LEU ASP GLU THR ILE ALA LEU HIS SER ASP GLY SER GLU SEQRES 18 B 461 ALA ARG TYR THR TYR SER SER ALA TRP PHE ASP ALA ILE SEQRES 19 B 461 SER ALA PRO PRO LYS LEU GLY ARG ALA ALA VAL SER ARG SEQRES 20 B 461 GLY ARG LEU ALA THR VAL GLU GLN LEU PRO ALA LYS LEU SEQRES 21 B 461 ARG SER GLU PRO LEU LYS PHE ASP ALA PRO GLN LEU LEU SEQRES 22 B 461 THR LEU PRO ASP VAL PHE PRO ASN GLY LEU ALA ASN LYS SEQRES 23 B 461 TYR THR PHE GLY PRO ILE GLY GLU LEU TRP TYR ARG LYS SEQRES 24 B 461 SER GLY THR TYR ARG GLY LYS VAL GLN ASN LEU THR GLN SEQRES 25 B 461 PHE TYR HIS PRO LEU ASP MET PHE GLY GLU TRP ASN ARG SEQRES 26 B 461 ALA TYR GLY PRO ALA GLY PHE LEU GLN TYR GLN PHE VAL SEQRES 27 B 461 ILE PRO THR GLU ALA VAL ASP GLU PHE LYS LYS ILE ILE SEQRES 28 B 461 GLY VAL ILE GLN ALA SER GLY HIS TYR SER PHE LEU ASN SEQRES 29 B 461 VAL PHE LYS LEU PHE GLY PRO ARG ASN GLN ALA PRO LEU SEQRES 30 B 461 SER PHE PRO ILE PRO GLY TRP ASN ILE CYS VAL ASP PHE SEQRES 31 B 461 PRO ILE LYS ASP GLY LEU GLY LYS PHE VAL SER GLU LEU SEQRES 32 B 461 ASP ARG ARG VAL LEU GLU PHE GLY GLY ARG LEU TYR THR SEQRES 33 B 461 ALA LYS ASP SER ARG THR THR ALA GLU THR PHE HIS ALA SEQRES 34 B 461 MET TYR PRO ARG VAL ASP GLU TRP ILE SER VAL ARG ARG SEQRES 35 B 461 LYS VAL ASP PRO LEU ARG VAL PHE ALA SER ASP MET ALA SEQRES 36 B 461 ARG ARG LEU GLU LEU LEU HET FAD A 501 53 HET 1W6 A 502 25 HET GOL A 503 6 HET IMD A 504 5 HET FAD B 501 53 HET 1W6 B 502 25 HET GOL B 503 6 HET GOL B 504 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 1W6 ETHYL ({2-[(1,3-BENZOTHIAZOL-2-YLCARBONYL) HETNAM 2 1W6 AMINO]THIOPHEN-3-YL}CARBONYL)CARBAMATE HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 1W6 2(C16 H13 N3 O4 S2) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 IMD C3 H5 N2 1+ FORMUL 11 HOH *39(H2 O) HELIX 1 1 ASP A 31 SER A 45 1 15 HELIX 2 2 ASN A 97 LEU A 106 1 10 HELIX 3 3 THR A 122 CYS A 129 1 8 HELIX 4 4 ASN A 135 GLY A 140 1 6 HELIX 5 5 SER A 141 ASN A 144 5 4 HELIX 6 6 ASP A 167 VAL A 175 1 9 HELIX 7 7 SER A 208 HIS A 216 1 9 HELIX 8 8 GLY A 219 TYR A 224 5 6 HELIX 9 9 THR A 252 LEU A 256 5 5 HELIX 10 10 PRO A 257 SER A 262 1 6 HELIX 11 11 GLY A 290 GLY A 301 1 12 HELIX 12 12 LEU A 310 TYR A 314 1 5 HELIX 13 13 ALA A 343 SER A 357 1 15 HELIX 14 14 GLY A 395 PHE A 410 1 16 HELIX 15 15 THR A 423 TYR A 431 1 9 HELIX 16 16 ARG A 433 ASP A 445 1 13 HELIX 17 17 SER A 452 LEU A 458 1 7 HELIX 18 18 ASP B 31 SER B 45 1 15 HELIX 19 19 ASN B 97 LEU B 106 1 10 HELIX 20 20 THR B 122 CYS B 129 1 8 HELIX 21 21 ASN B 135 GLY B 140 1 6 HELIX 22 22 SER B 141 ASN B 144 5 4 HELIX 23 23 ASP B 167 VAL B 175 1 9 HELIX 24 24 SER B 208 HIS B 216 1 9 HELIX 25 25 GLY B 219 TYR B 224 5 6 HELIX 26 26 THR B 252 LEU B 256 5 5 HELIX 27 27 PRO B 257 SER B 262 1 6 HELIX 28 28 LEU B 295 THR B 302 1 8 HELIX 29 29 LEU B 310 TYR B 314 1 5 HELIX 30 30 ALA B 343 SER B 357 1 15 HELIX 31 31 GLY B 395 PHE B 410 1 16 HELIX 32 32 THR B 423 TYR B 431 1 9 HELIX 33 33 ARG B 433 ASP B 445 1 13 HELIX 34 34 SER B 452 LEU B 458 1 7 SHEET 1 A 4 ALA A 10 LEU A 13 0 SHEET 2 A 4 SER A 22 ARG A 28 -1 O ALA A 24 N THR A 11 SHEET 3 A 4 LEU A 70 ASP A 73 1 O VAL A 71 N ASN A 25 SHEET 4 A 4 ALA A 51 ARG A 54 1 N ARG A 54 O ILE A 72 SHEET 1 B10 ILE A 158 LEU A 161 0 SHEET 2 B10 VAL A 146 LEU A 152 -1 N MET A 149 O LEU A 161 SHEET 3 B10 ILE A 183 GLU A 190 -1 O ILE A 183 N LEU A 152 SHEET 4 B10 LEU A 89 ASP A 93 -1 N VAL A 90 O ILE A 189 SHEET 5 B10 ILE A 80 ASP A 84 -1 N SER A 82 O ASP A 91 SHEET 6 B10 ILE B 80 ASP B 84 -1 O ILE B 83 N ILE A 83 SHEET 7 B10 LEU B 89 ASP B 93 -1 O ASP B 91 N HIS B 81 SHEET 8 B10 ILE B 183 GLU B 190 -1 O ILE B 189 N VAL B 90 SHEET 9 B10 VAL B 146 LEU B 152 -1 N LEU B 152 O ILE B 183 SHEET 10 B10 ILE B 158 LEU B 161 -1 O LEU B 161 N MET B 149 SHEET 1 C 2 LEU A 110 TRP A 111 0 SHEET 2 C 2 THR A 192 PRO A 193 -1 O THR A 192 N TRP A 111 SHEET 1 D 8 TYR A 303 ASN A 309 0 SHEET 2 D 8 TYR A 198 VAL A 205 -1 N PHE A 199 O GLN A 308 SHEET 3 D 8 ALA A 243 LEU A 250 -1 O ARG A 247 N ASP A 202 SHEET 4 D 8 TYR A 226 PHE A 231 -1 N TRP A 230 O ALA A 244 SHEET 5 D 8 VAL A 365 PHE A 369 -1 O PHE A 366 N ALA A 229 SHEET 6 D 8 GLY A 383 PRO A 391 -1 O ASN A 385 N LYS A 367 SHEET 7 D 8 PHE A 332 PRO A 340 -1 N LEU A 333 O PHE A 390 SHEET 8 D 8 ARG A 413 LEU A 414 -1 O ARG A 413 N VAL A 338 SHEET 1 E 4 ALA B 10 LEU B 13 0 SHEET 2 E 4 SER B 22 ARG B 28 -1 O SER B 22 N LEU B 13 SHEET 3 E 4 LEU B 70 ASP B 73 1 O VAL B 71 N ASN B 25 SHEET 4 E 4 ALA B 51 ARG B 54 1 N ARG B 54 O ILE B 72 SHEET 1 F 2 LEU B 110 TRP B 111 0 SHEET 2 F 2 THR B 192 PRO B 193 -1 O THR B 192 N TRP B 111 SHEET 1 G 8 TYR B 303 ASN B 309 0 SHEET 2 G 8 TYR B 198 VAL B 205 -1 N PHE B 199 O GLN B 308 SHEET 3 G 8 ALA B 243 LEU B 250 -1 O ARG B 247 N ASP B 202 SHEET 4 G 8 TYR B 226 PHE B 231 -1 N TRP B 230 O ALA B 244 SHEET 5 G 8 VAL B 365 PHE B 369 -1 O PHE B 366 N ALA B 229 SHEET 6 G 8 GLY B 383 PRO B 391 -1 O ASN B 385 N LYS B 367 SHEET 7 G 8 PHE B 332 PRO B 340 -1 N LEU B 333 O PHE B 390 SHEET 8 G 8 ARG B 413 LEU B 414 -1 O ARG B 413 N VAL B 338 CISPEP 1 PRO A 237 PRO A 238 0 3.70 CISPEP 2 PRO B 237 PRO B 238 0 2.99 SITE 1 AC1 33 TRP A 16 ILE A 52 ALA A 53 ARG A 54 SITE 2 AC1 33 GLY A 55 LEU A 56 GLY A 57 ARG A 58 SITE 3 AC1 33 SER A 59 TYR A 60 ASN A 63 ALA A 64 SITE 4 AC1 33 MET A 74 ALA A 94 PRO A 116 GLY A 117 SITE 5 AC1 33 THR A 118 VAL A 121 THR A 122 GLY A 124 SITE 6 AC1 33 GLY A 125 ALA A 128 CYS A 129 ILE A 131 SITE 7 AC1 33 HIS A 132 ASN A 178 GLY A 179 GLY A 182 SITE 8 AC1 33 ILE A 184 TYR A 415 ALA A 417 1W6 A 502 SITE 9 AC1 33 HOH A 611 SITE 1 AC2 10 TYR A 60 HIS A 132 LYS A 134 SER A 228 SITE 2 AC2 10 TRP A 230 TYR A 314 VAL A 365 LYS A 367 SITE 3 AC2 10 LYS A 418 FAD A 501 SITE 1 AC3 5 HIS A 359 TYR A 360 PRO A 391 LYS A 393 SITE 2 AC3 5 LEU A 396 SITE 1 AC4 3 SER A 82 ASP A 84 ASP B 84 SITE 1 AC5 32 TRP B 16 ILE B 52 ALA B 53 ARG B 54 SITE 2 AC5 32 GLY B 55 LEU B 56 GLY B 57 ARG B 58 SITE 3 AC5 32 SER B 59 TYR B 60 ASN B 63 ALA B 64 SITE 4 AC5 32 MET B 74 ALA B 94 PRO B 116 GLY B 117 SITE 5 AC5 32 THR B 118 VAL B 121 THR B 122 GLY B 124 SITE 6 AC5 32 GLY B 125 ALA B 128 CYS B 129 ILE B 131 SITE 7 AC5 32 HIS B 132 ASN B 178 GLY B 179 GLY B 182 SITE 8 AC5 32 ILE B 184 TYR B 415 ALA B 417 1W6 B 502 SITE 1 AC6 10 TYR B 60 HIS B 132 LYS B 134 SER B 228 SITE 2 AC6 10 TRP B 230 TYR B 314 PRO B 316 CYS B 387 SITE 3 AC6 10 LYS B 418 FAD B 501 SITE 1 AC7 8 MET B 102 ALA B 105 LEU B 106 LEU B 110 SITE 2 AC7 8 TRP B 111 VAL B 112 LEU B 115 MET B 191 SITE 1 AC8 9 HIS B 137 HIS B 216 GLU B 221 SER B 227 SITE 2 AC8 9 SER B 228 ALA B 229 PHE B 366 LYS B 367 SITE 3 AC8 9 LEU B 368 CRYST1 78.230 84.190 81.050 90.00 103.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012783 0.000000 0.003081 0.00000 SCALE2 0.000000 0.011878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012691 0.00000