HEADER HYDROLASE/RNA 28-MAY-13 4KXT TITLE STRUCTURE OF HUMAN ARGONAUTE1 IN COMPLEX WITH GUIDE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARGONAUTE1, HAGO1, EUKARYOTIC TRANSLATION INITIATION FACTOR COMPND 5 2C 1, EIF-2C 1, EIF2C 1, PUTATIVE RNA-BINDING PROTEIN Q99; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: GUIDE RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF2C1, AGO1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SPODOPTERA FRUGIPERDA; SOURCE 10 ORGANISM_TAXID: 7108 KEYWDS RNASE H FOLD, NUCLEASE, RNA, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.NAKANISHI,D.J.PATEL REVDAT 2 28-FEB-24 4KXT 1 SEQADV REVDAT 1 31-JUL-13 4KXT 0 JRNL AUTH K.NAKANISHI,M.ASCANO,T.GOGAKOS,S.ISHIBE-MURAKAMI, JRNL AUTH 2 A.A.SERGANOV,D.BRISKIN,P.MOROZOV,T.TUSCHL,D.J.PATEL JRNL TITL EUKARYOTE-SPECIFIC INSERTION ELEMENTS CONTROL HUMAN JRNL TITL 2 ARGONAUTE SLICER ACTIVITY. JRNL REF CELL REP V. 3 1893 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23809764 JRNL DOI 10.1016/J.CELREP.2013.06.010 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.590 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8736 - 5.5259 1.00 3177 153 0.1841 0.1999 REMARK 3 2 5.5259 - 4.3870 1.00 3039 146 0.1473 0.1863 REMARK 3 3 4.3870 - 3.8327 1.00 3005 145 0.1449 0.1950 REMARK 3 4 3.8327 - 3.4824 1.00 2994 144 0.1661 0.2361 REMARK 3 5 3.4824 - 3.2328 1.00 2988 143 0.1883 0.2258 REMARK 3 6 3.2328 - 3.0422 1.00 2952 143 0.1902 0.2642 REMARK 3 7 3.0422 - 2.8899 1.00 2984 143 0.2009 0.3065 REMARK 3 8 2.8899 - 2.7641 1.00 2958 143 0.1939 0.2640 REMARK 3 9 2.7641 - 2.6577 1.00 2928 140 0.1949 0.2575 REMARK 3 10 2.6577 - 2.5660 1.00 2949 142 0.1880 0.2545 REMARK 3 11 2.5660 - 2.4858 1.00 2947 141 0.1888 0.2709 REMARK 3 12 2.4858 - 2.4147 1.00 2929 141 0.1989 0.2578 REMARK 3 13 2.4147 - 2.3512 1.00 2937 142 0.1919 0.2678 REMARK 3 14 2.3512 - 2.2940 0.94 2778 134 0.2117 0.2795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6876 REMARK 3 ANGLE : 1.165 9367 REMARK 3 CHIRALITY : 0.078 1037 REMARK 3 PLANARITY : 0.005 1171 REMARK 3 DIHEDRAL : 15.565 2640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4375 1.9227 -3.2093 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.4165 REMARK 3 T33: 0.5116 T12: -0.0189 REMARK 3 T13: 0.0672 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 1.7867 L22: 1.4250 REMARK 3 L33: 0.7201 L12: 0.1232 REMARK 3 L13: -0.0460 L23: 0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0900 S13: 0.1622 REMARK 3 S21: 0.0962 S22: 0.0892 S23: 0.7663 REMARK 3 S31: 0.0073 S32: -0.4273 S33: -0.0409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0969 8.4738 -36.5713 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2139 REMARK 3 T33: 0.2257 T12: -0.0195 REMARK 3 T13: 0.0085 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.7768 L22: 0.0185 REMARK 3 L33: 2.7008 L12: -0.2717 REMARK 3 L13: 1.4107 L23: -0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: -0.0294 S13: -0.0897 REMARK 3 S21: -0.0020 S22: 0.0641 S23: 0.0767 REMARK 3 S31: 0.0683 S32: -0.1256 S33: -0.1487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 857 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9536 -14.2092 -19.3018 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.1574 REMARK 3 T33: 0.1636 T12: 0.0029 REMARK 3 T13: -0.0128 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.8365 L22: 1.1154 REMARK 3 L33: 1.2131 L12: -0.2000 REMARK 3 L13: -0.2429 L23: 0.4607 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: 0.0471 S13: 0.0290 REMARK 3 S21: -0.1614 S22: -0.0287 S23: 0.0030 REMARK 3 S31: -0.1576 S32: -0.0084 S33: -0.0669 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6848 -0.8719 -26.5557 REMARK 3 T TENSOR REMARK 3 T11: 0.4560 T22: 0.4915 REMARK 3 T33: 0.4111 T12: 0.0675 REMARK 3 T13: 0.0538 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.1216 L22: 0.0143 REMARK 3 L33: 0.3290 L12: -0.0767 REMARK 3 L13: 0.2593 L23: -0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.2345 S13: 0.1064 REMARK 3 S21: -0.1082 S22: 0.0549 S23: -0.0024 REMARK 3 S31: -0.0989 S32: -0.3675 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.294 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL PH 8.0, 50 MM SODIUM REMARK 280 CHLORIDE, 5 MM MAGNESIUM CHLORIDE, 1 MM DITHIOTHREITOL, 50% REMARK 280 GLYCEROL, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.93950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.35050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.12450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.35050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.93950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.12450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 TYR A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 LEU A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 VAL A 20 REMARK 465 PHE A 21 REMARK 465 PHE A 113 REMARK 465 GLU A 114 REMARK 465 VAL A 115 REMARK 465 THR A 116 REMARK 465 ILE A 117 REMARK 465 PRO A 118 REMARK 465 GLY A 119 REMARK 465 GLU A 120 REMARK 465 GLY A 121 REMARK 465 LYS A 122 REMARK 465 ASP A 123 REMARK 465 ARG A 124 REMARK 465 ILE A 125 REMARK 465 PHE A 126 REMARK 465 GLU A 819 REMARK 465 HIS A 820 REMARK 465 ASP A 821 REMARK 465 SER A 822 REMARK 465 GLY A 823 REMARK 465 GLU A 824 REMARK 465 GLY A 825 REMARK 465 SER A 826 REMARK 465 HIS A 827 REMARK 465 ILE A 828 REMARK 465 SER A 829 REMARK 465 GLY A 830 REMARK 465 GLN A 831 REMARK 465 SER A 832 REMARK 465 ASN A 833 REMARK 465 GLY A 834 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 9 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 9 N1 C2 N3 C4 REMARK 470 A B 19 P OP1 OP2 O5' C5' C4' O4' REMARK 470 A B 19 C3' C2' O2' C1' N9 C8 N7 REMARK 470 A B 19 C5 C6 N6 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 1 P A B 1 OP3 -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 47.72 -75.45 REMARK 500 PHE A 80 38.67 -95.20 REMARK 500 ILE A 84 25.88 -142.47 REMARK 500 PHE A 85 -17.16 -141.64 REMARK 500 LYS A 95 -103.84 -123.62 REMARK 500 ASN A 108 36.19 -165.80 REMARK 500 LEU A 133 -77.19 -110.13 REMARK 500 ALA A 207 -160.33 -119.16 REMARK 500 GLN A 272 13.88 57.31 REMARK 500 GLU A 331 32.47 -80.34 REMARK 500 GLN A 332 -12.83 -146.47 REMARK 500 THR A 355 -167.24 -73.30 REMARK 500 CYS A 460 67.39 -165.80 REMARK 500 PRO A 600 148.63 -31.59 REMARK 500 SER A 621 -52.62 -125.90 REMARK 500 ARG A 631 127.98 -37.85 REMARK 500 ARG A 633 -6.65 78.12 REMARK 500 ASN A 737 -61.46 75.85 REMARK 500 PHE A 742 -14.07 -142.31 REMARK 500 ASP A 768 87.19 -151.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 4KXT A 1 857 UNP Q9UL18 AGO1_HUMAN 1 857 DBREF 4KXT B 1 21 PDB 4KXT 4KXT 1 21 SEQADV 4KXT GLY A -4 UNP Q9UL18 EXPRESSION TAG SEQADV 4KXT ALA A -3 UNP Q9UL18 EXPRESSION TAG SEQADV 4KXT MET A -2 UNP Q9UL18 EXPRESSION TAG SEQADV 4KXT GLY A -1 UNP Q9UL18 EXPRESSION TAG SEQADV 4KXT SER A 0 UNP Q9UL18 EXPRESSION TAG SEQRES 1 A 862 GLY ALA MET GLY SER MET GLU ALA GLY PRO SER GLY ALA SEQRES 2 A 862 ALA ALA GLY ALA TYR LEU PRO PRO LEU GLN GLN VAL PHE SEQRES 3 A 862 GLN ALA PRO ARG ARG PRO GLY ILE GLY THR VAL GLY LYS SEQRES 4 A 862 PRO ILE LYS LEU LEU ALA ASN TYR PHE GLU VAL ASP ILE SEQRES 5 A 862 PRO LYS ILE ASP VAL TYR HIS TYR GLU VAL ASP ILE LYS SEQRES 6 A 862 PRO ASP LYS CYS PRO ARG ARG VAL ASN ARG GLU VAL VAL SEQRES 7 A 862 GLU TYR MET VAL GLN HIS PHE LYS PRO GLN ILE PHE GLY SEQRES 8 A 862 ASP ARG LYS PRO VAL TYR ASP GLY LYS LYS ASN ILE TYR SEQRES 9 A 862 THR VAL THR ALA LEU PRO ILE GLY ASN GLU ARG VAL ASP SEQRES 10 A 862 PHE GLU VAL THR ILE PRO GLY GLU GLY LYS ASP ARG ILE SEQRES 11 A 862 PHE LYS VAL SER ILE LYS TRP LEU ALA ILE VAL SER TRP SEQRES 12 A 862 ARG MET LEU HIS GLU ALA LEU VAL SER GLY GLN ILE PRO SEQRES 13 A 862 VAL PRO LEU GLU SER VAL GLN ALA LEU ASP VAL ALA MET SEQRES 14 A 862 ARG HIS LEU ALA SER MET ARG TYR THR PRO VAL GLY ARG SEQRES 15 A 862 SER PHE PHE SER PRO PRO GLU GLY TYR TYR HIS PRO LEU SEQRES 16 A 862 GLY GLY GLY ARG GLU VAL TRP PHE GLY PHE HIS GLN SER SEQRES 17 A 862 VAL ARG PRO ALA MET TRP LYS MET MET LEU ASN ILE ASP SEQRES 18 A 862 VAL SER ALA THR ALA PHE TYR LYS ALA GLN PRO VAL ILE SEQRES 19 A 862 GLU PHE MET CYS GLU VAL LEU ASP ILE ARG ASN ILE ASP SEQRES 20 A 862 GLU GLN PRO LYS PRO LEU THR ASP SER GLN ARG VAL ARG SEQRES 21 A 862 PHE THR LYS GLU ILE LYS GLY LEU LYS VAL GLU VAL THR SEQRES 22 A 862 HIS CYS GLY GLN MET LYS ARG LYS TYR ARG VAL CYS ASN SEQRES 23 A 862 VAL THR ARG ARG PRO ALA SER HIS GLN THR PHE PRO LEU SEQRES 24 A 862 GLN LEU GLU SER GLY GLN THR VAL GLU CYS THR VAL ALA SEQRES 25 A 862 GLN TYR PHE LYS GLN LYS TYR ASN LEU GLN LEU LYS TYR SEQRES 26 A 862 PRO HIS LEU PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS SEQRES 27 A 862 HIS THR TYR LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA SEQRES 28 A 862 GLY GLN ARG CYS ILE LYS LYS LEU THR ASP ASN GLN THR SEQRES 29 A 862 SER THR MET ILE LYS ALA THR ALA ARG SER ALA PRO ASP SEQRES 30 A 862 ARG GLN GLU GLU ILE SER ARG LEU MET LYS ASN ALA SER SEQRES 31 A 862 TYR ASN LEU ASP PRO TYR ILE GLN GLU PHE GLY ILE LYS SEQRES 32 A 862 VAL LYS ASP ASP MET THR GLU VAL THR GLY ARG VAL LEU SEQRES 33 A 862 PRO ALA PRO ILE LEU GLN TYR GLY GLY ARG ASN ARG ALA SEQRES 34 A 862 ILE ALA THR PRO ASN GLN GLY VAL TRP ASP MET ARG GLY SEQRES 35 A 862 LYS GLN PHE TYR ASN GLY ILE GLU ILE LYS VAL TRP ALA SEQRES 36 A 862 ILE ALA CYS PHE ALA PRO GLN LYS GLN CYS ARG GLU GLU SEQRES 37 A 862 VAL LEU LYS ASN PHE THR ASP GLN LEU ARG LYS ILE SER SEQRES 38 A 862 LYS ASP ALA GLY MET PRO ILE GLN GLY GLN PRO CYS PHE SEQRES 39 A 862 CYS LYS TYR ALA GLN GLY ALA ASP SER VAL GLU PRO MET SEQRES 40 A 862 PHE ARG HIS LEU LYS ASN THR TYR SER GLY LEU GLN LEU SEQRES 41 A 862 ILE ILE VAL ILE LEU PRO GLY LYS THR PRO VAL TYR ALA SEQRES 42 A 862 GLU VAL LYS ARG VAL GLY ASP THR LEU LEU GLY MET ALA SEQRES 43 A 862 THR GLN CYS VAL GLN VAL LYS ASN VAL VAL LYS THR SER SEQRES 44 A 862 PRO GLN THR LEU SER ASN LEU CYS LEU LYS ILE ASN VAL SEQRES 45 A 862 LYS LEU GLY GLY ILE ASN ASN ILE LEU VAL PRO HIS GLN SEQRES 46 A 862 ARG SER ALA VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY SEQRES 47 A 862 ALA ASP VAL THR HIS PRO PRO ALA GLY ASP GLY LYS LYS SEQRES 48 A 862 PRO SER ILE THR ALA VAL VAL GLY SER MET ASP ALA HIS SEQRES 49 A 862 PRO SER ARG TYR CYS ALA THR VAL ARG VAL GLN ARG PRO SEQRES 50 A 862 ARG GLN GLU ILE ILE GLU ASP LEU SER TYR MET VAL ARG SEQRES 51 A 862 GLU LEU LEU ILE GLN PHE TYR LYS SER THR ARG PHE LYS SEQRES 52 A 862 PRO THR ARG ILE ILE PHE TYR ARG ASP GLY VAL PRO GLU SEQRES 53 A 862 GLY GLN LEU PRO GLN ILE LEU HIS TYR GLU LEU LEU ALA SEQRES 54 A 862 ILE ARG ASP ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN SEQRES 55 A 862 PRO GLY ILE THR TYR ILE VAL VAL GLN LYS ARG HIS HIS SEQRES 56 A 862 THR ARG LEU PHE CYS ALA ASP LYS ASN GLU ARG ILE GLY SEQRES 57 A 862 LYS SER GLY ASN ILE PRO ALA GLY THR THR VAL ASP THR SEQRES 58 A 862 ASN ILE THR HIS PRO PHE GLU PHE ASP PHE TYR LEU CYS SEQRES 59 A 862 SER HIS ALA GLY ILE GLN GLY THR SER ARG PRO SER HIS SEQRES 60 A 862 TYR TYR VAL LEU TRP ASP ASP ASN ARG PHE THR ALA ASP SEQRES 61 A 862 GLU LEU GLN ILE LEU THR TYR GLN LEU CYS HIS THR TYR SEQRES 62 A 862 VAL ARG CYS THR ARG SER VAL SER ILE PRO ALA PRO ALA SEQRES 63 A 862 TYR TYR ALA ARG LEU VAL ALA PHE ARG ALA ARG TYR HIS SEQRES 64 A 862 LEU VAL ASP LYS GLU HIS ASP SER GLY GLU GLY SER HIS SEQRES 65 A 862 ILE SER GLY GLN SER ASN GLY ARG ASP PRO GLN ALA LEU SEQRES 66 A 862 ALA LYS ALA VAL GLN VAL HIS GLN ASP THR LEU ARG THR SEQRES 67 A 862 MET TYR PHE ALA SEQRES 1 B 12 A A A A A A A A A A U U FORMUL 3 HOH *288(H2 O) HELIX 1 1 PRO A 65 PHE A 80 1 16 HELIX 2 2 PHE A 80 PHE A 85 1 6 HELIX 3 3 TRP A 138 GLY A 148 1 11 HELIX 4 4 PRO A 153 ARG A 165 1 13 HELIX 5 5 ARG A 165 TYR A 172 1 8 HELIX 6 6 PRO A 227 ASP A 237 1 11 HELIX 7 7 THR A 249 LYS A 261 1 13 HELIX 8 8 VAL A 306 ASN A 315 1 10 HELIX 9 9 THR A 355 ALA A 367 1 13 HELIX 10 10 SER A 369 SER A 385 1 17 HELIX 11 11 TYR A 386 LEU A 388 5 3 HELIX 12 12 ASP A 389 PHE A 395 1 7 HELIX 13 13 PRO A 456 CYS A 460 5 5 HELIX 14 14 ARG A 461 ALA A 479 1 19 HELIX 15 15 GLY A 495 ASP A 497 5 3 HELIX 16 16 SER A 498 TYR A 510 1 13 HELIX 17 17 PRO A 525 THR A 536 1 12 HELIX 18 18 VAL A 547 LYS A 552 1 6 HELIX 19 19 SER A 554 LEU A 569 1 16 HELIX 20 20 PRO A 578 ARG A 581 5 4 HELIX 21 21 SER A 582 GLN A 587 5 6 HELIX 22 22 ASP A 639 ARG A 656 1 18 HELIX 23 23 PRO A 670 GLY A 672 5 3 HELIX 24 24 GLN A 673 LYS A 691 1 19 HELIX 25 25 ASP A 717 ARG A 721 5 5 HELIX 26 26 THR A 773 CYS A 785 1 13 HELIX 27 27 PRO A 798 LEU A 815 1 18 HELIX 28 28 ASP A 836 GLN A 845 1 10 HELIX 29 29 HIS A 847 ARG A 852 1 6 SHEET 1 A11 TYR A 623 GLN A 630 0 SHEET 2 A11 SER A 608 SER A 615 -1 N THR A 610 O ARG A 628 SHEET 3 A11 VAL A 589 THR A 597 -1 N THR A 597 O ILE A 609 SHEET 4 A11 ARG A 661 ASP A 667 1 O ILE A 663 N LEU A 592 SHEET 5 A11 GLY A 699 GLN A 706 1 O ILE A 703 N PHE A 664 SHEET 6 A11 SER A 761 ASP A 768 -1 O HIS A 762 N GLN A 706 SHEET 7 A11 ASP A 745 CYS A 749 -1 N PHE A 746 O TYR A 763 SHEET 8 A11 THR A 732 VAL A 734 -1 N VAL A 734 O TYR A 747 SHEET 9 A11 THR A 404 VAL A 410 -1 N ARG A 409 O THR A 733 SHEET 10 A11 LYS A 34 ALA A 40 -1 N LEU A 38 O VAL A 406 SHEET 11 A11 LEU A 713 CYS A 715 -1 O PHE A 714 N LEU A 39 SHEET 1 B 4 THR A 173 VAL A 175 0 SHEET 2 B 4 SER A 178 PHE A 180 -1 O PHE A 180 N THR A 173 SHEET 3 B 4 ARG A 194 PRO A 206 -1 O PHE A 200 N PHE A 179 SHEET 4 B 4 PRO A 189 GLY A 191 -1 N LEU A 190 O ARG A 194 SHEET 1 C 6 THR A 173 VAL A 175 0 SHEET 2 C 6 SER A 178 PHE A 180 -1 O PHE A 180 N THR A 173 SHEET 3 C 6 ARG A 194 PRO A 206 -1 O PHE A 200 N PHE A 179 SHEET 4 C 6 MET A 211 TYR A 223 -1 O SER A 218 N GLY A 199 SHEET 5 C 6 TYR A 42 ASP A 46 -1 N PHE A 43 O LEU A 213 SHEET 6 C 6 LYS A 398 VAL A 399 -1 O LYS A 398 N ASP A 46 SHEET 1 D 4 VAL A 91 TYR A 92 0 SHEET 2 D 4 ASN A 97 THR A 100 -1 O TYR A 99 N VAL A 91 SHEET 3 D 4 ASP A 51 ILE A 59 -1 N TYR A 53 O THR A 100 SHEET 4 D 4 VAL A 128 SER A 137 -1 O VAL A 136 N VAL A 52 SHEET 1 E 5 THR A 335 PRO A 338 0 SHEET 2 E 5 PRO A 324 VAL A 328 -1 N LEU A 326 O LEU A 337 SHEET 3 E 5 LYS A 276 PRO A 286 -1 N CYS A 280 O GLN A 327 SHEET 4 E 5 LYS A 264 VAL A 267 -1 N VAL A 265 O TYR A 277 SHEET 5 E 5 CYS A 342 ILE A 344 -1 O ASN A 343 N GLU A 266 SHEET 1 F 2 THR A 291 GLN A 295 0 SHEET 2 F 2 THR A 301 THR A 305 -1 O VAL A 302 N LEU A 294 SHEET 1 G 3 ILE A 425 ALA A 426 0 SHEET 2 G 3 LEU A 416 GLN A 417 -1 N LEU A 416 O ALA A 426 SHEET 3 G 3 ILE A 575 LEU A 576 -1 O ILE A 575 N GLN A 417 SHEET 1 H 4 PHE A 489 TYR A 492 0 SHEET 2 H 4 TRP A 449 CYS A 453 1 N ILE A 451 O PHE A 489 SHEET 3 H 4 LEU A 515 LEU A 520 1 O ILE A 519 N ALA A 452 SHEET 4 H 4 THR A 542 GLN A 546 1 O GLN A 543 N ILE A 516 CISPEP 1 LYS A 60 PRO A 61 0 -0.18 CISPEP 2 HIS A 619 PRO A 620 0 -10.17 CRYST1 69.879 100.249 136.701 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007315 0.00000