HEADER TRANSPORT PROTEIN, MEMBRANE PROTEIN 28-MAY-13 4KY0 TITLE CRYSTAL STRUCTURE OF A SUBSTRATE-FREE GLUTAMATE TRANSPORTER HOMOLOGUE TITLE 2 FROM THERMOCOCCUS KODAKARENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON/GLUTAMATE SYMPORTER, SDF FAMILY; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 5 GENE: TK0986; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINO ACID TRANSPORTER, ASPARTATE TRANSPORT, GLUTAMATE TRANSPORT KEYWDS 2 HOMOLOGUE, TRANSPORT PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GUSKOV,S.JENSEN,S.REMPEL,I.HANELT,D.J.SLOTBOOM REVDAT 3 20-SEP-23 4KY0 1 REMARK SEQADV REVDAT 2 23-OCT-13 4KY0 1 JRNL REVDAT 1 11-SEP-13 4KY0 0 JRNL AUTH S.JENSEN,A.GUSKOV,S.REMPEL,I.HANELT,D.J.SLOTBOOM JRNL TITL CRYSTAL STRUCTURE OF A SUBSTRATE-FREE ASPARTATE TRANSPORTER. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 1224 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 24013209 JRNL DOI 10.1038/NSMB.2663 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3660 - 7.8518 0.99 2851 151 0.2317 0.2824 REMARK 3 2 7.8518 - 6.2364 1.00 2748 145 0.2206 0.2318 REMARK 3 3 6.2364 - 5.4493 1.00 2715 142 0.1956 0.2615 REMARK 3 4 5.4493 - 4.9516 1.00 2687 141 0.1583 0.2297 REMARK 3 5 4.9516 - 4.5970 1.00 2691 142 0.1421 0.1989 REMARK 3 6 4.5970 - 4.3262 0.99 2645 139 0.1458 0.2054 REMARK 3 7 4.3262 - 4.1096 1.00 2677 141 0.1748 0.2354 REMARK 3 8 4.1096 - 3.9308 1.00 2623 139 0.1903 0.2488 REMARK 3 9 3.9308 - 3.7796 1.00 2654 139 0.2044 0.2258 REMARK 3 10 3.7796 - 3.6492 1.00 2658 140 0.2131 0.3021 REMARK 3 11 3.6492 - 3.5351 1.00 2640 139 0.2550 0.3329 REMARK 3 12 3.5351 - 3.4341 0.99 2625 138 0.2940 0.3489 REMARK 3 13 3.4341 - 3.3437 1.00 2605 138 0.3021 0.4107 REMARK 3 14 3.3437 - 3.2621 1.00 2651 139 0.3168 0.3698 REMARK 3 15 3.2621 - 3.1880 1.00 2630 139 0.3459 0.3826 REMARK 3 16 3.1880 - 3.1202 1.00 2646 139 0.3563 0.4056 REMARK 3 17 3.1202 - 3.0578 1.00 2640 138 0.3543 0.4153 REMARK 3 18 3.0578 - 3.0001 1.00 2599 137 0.3516 0.3802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 9528 REMARK 3 ANGLE : 1.510 12948 REMARK 3 CHIRALITY : 0.061 1614 REMARK 3 PLANARITY : 0.008 1580 REMARK 3 DIHEDRAL : 16.723 3377 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 6.0777 48.1853 -32.1031 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.7786 REMARK 3 T33: 0.5076 T12: 0.2874 REMARK 3 T13: -0.0554 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.5942 L22: 1.6193 REMARK 3 L33: 2.5523 L12: -0.2579 REMARK 3 L13: -1.2225 L23: -0.5050 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.0792 S13: 0.1302 REMARK 3 S21: 0.2176 S22: 0.1892 S23: 0.2712 REMARK 3 S31: -0.5206 S32: -0.8078 S33: -0.2193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 47.8720 62.8492 -26.9447 REMARK 3 T TENSOR REMARK 3 T11: 0.7075 T22: 0.5658 REMARK 3 T33: 0.6942 T12: 0.0346 REMARK 3 T13: 0.1611 T23: 0.1465 REMARK 3 L TENSOR REMARK 3 L11: 1.9733 L22: 2.2772 REMARK 3 L33: 3.1407 L12: 0.0051 REMARK 3 L13: 0.8111 L23: 1.1642 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: -0.0083 S13: 0.3728 REMARK 3 S21: -0.4908 S22: 0.0965 S23: -0.1216 REMARK 3 S31: -0.4380 S32: 0.5122 S33: -0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 38.7034 19.2234 -24.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.7425 T22: 0.4361 REMARK 3 T33: 0.6059 T12: 0.1600 REMARK 3 T13: 0.1129 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.5825 L22: 1.9910 REMARK 3 L33: 2.8725 L12: 0.3240 REMARK 3 L13: 0.6238 L23: -0.0508 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0195 S13: -0.0364 REMARK 3 S21: 0.0335 S22: -0.1454 S23: -0.0171 REMARK 3 S31: 0.6162 S32: -0.0648 S33: 0.1391 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000079936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50511 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 100 MM TRIS/BICINE, 60 MM REMARK 280 CACL2/MGCL2, 5% OG, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 206.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.17000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.17000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 206.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLU A 126 REMARK 465 ALA A 127 REMARK 465 GLN A 128 REMARK 465 PRO A 129 REMARK 465 PRO A 130 REMARK 465 SER A 131 REMARK 465 HIS A 431 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 TYR B 9 REMARK 465 GLY B 122 REMARK 465 LYS B 123 REMARK 465 ALA B 124 REMARK 465 ILE B 125 REMARK 465 GLU B 126 REMARK 465 ALA B 127 REMARK 465 GLN B 128 REMARK 465 SER B 430 REMARK 465 HIS B 431 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 ARG C 7 REMARK 465 ARG C 8 REMARK 465 TYR C 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 107 OE1 GLN C 341 2.13 REMARK 500 OD1 ASP A 424 OG SER A 426 2.13 REMARK 500 O VAL A 140 NH1 ARG B 54 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 336 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 88.32 -56.79 REMARK 500 ILE A 75 -141.16 43.89 REMARK 500 VAL A 115 -47.39 -134.83 REMARK 500 SER A 119 -61.08 -121.60 REMARK 500 LYS A 123 -116.20 52.93 REMARK 500 ILE A 247 -66.07 -102.40 REMARK 500 GLU A 292 -66.02 -90.71 REMARK 500 GLU A 294 -59.99 -122.12 REMARK 500 ILE A 301 -63.84 -98.80 REMARK 500 PHE A 304 -60.72 -106.78 REMARK 500 GLU A 420 -88.19 -124.24 REMARK 500 ILE B 75 -137.60 43.57 REMARK 500 ALA B 113 -58.33 -128.29 REMARK 500 SER B 131 -78.49 -125.29 REMARK 500 LEU B 132 8.78 56.91 REMARK 500 GLU B 152 71.02 34.43 REMARK 500 ILE B 247 -64.09 -100.64 REMARK 500 GLU B 292 -63.33 -92.47 REMARK 500 GLU B 294 -61.61 -123.04 REMARK 500 ILE B 301 -62.53 -100.03 REMARK 500 PHE B 304 -60.69 -106.97 REMARK 500 GLU B 420 -87.99 -122.33 REMARK 500 ILE C 75 -134.70 42.03 REMARK 500 ASN C 116 166.22 175.61 REMARK 500 THR C 121 -167.52 -163.85 REMARK 500 ALA C 127 37.15 38.28 REMARK 500 SER C 131 -70.39 -47.79 REMARK 500 VAL C 133 -60.10 -97.09 REMARK 500 GLU C 152 107.31 -48.46 REMARK 500 ILE C 247 -63.37 -103.43 REMARK 500 GLU C 292 -66.20 -90.56 REMARK 500 GLU C 294 -60.63 -122.04 REMARK 500 ILE C 301 -63.05 -102.66 REMARK 500 PHE C 304 -61.14 -105.59 REMARK 500 GLU C 420 -87.57 -124.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 123 ALA A 124 -132.23 REMARK 500 GLU A 422 LEU A 423 -30.50 REMARK 500 GLU C 126 ALA C 127 145.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 502 DBREF 4KY0 A 1 430 UNP Q5JID0 Q5JID0_PYRKO 1 430 DBREF 4KY0 B 1 430 UNP Q5JID0 Q5JID0_PYRKO 1 430 DBREF 4KY0 C 1 430 UNP Q5JID0 Q5JID0_PYRKO 1 430 SEQADV 4KY0 HIS A 431 UNP Q5JID0 EXPRESSION TAG SEQADV 4KY0 HIS B 431 UNP Q5JID0 EXPRESSION TAG SEQADV 4KY0 HIS C 431 UNP Q5JID0 EXPRESSION TAG SEQRES 1 A 431 MET GLY LYS SER LEU LEU ARG ARG TYR LEU ASP TYR PRO SEQRES 2 A 431 VAL LEU TRP LYS ILE LEU TRP GLY LEU VAL LEU GLY ALA SEQRES 3 A 431 VAL PHE GLY LEU ILE ALA GLY HIS PHE GLY TYR ALA GLY SEQRES 4 A 431 ALA VAL LYS THR TYR ILE LYS PRO PHE GLY ASP LEU PHE SEQRES 5 A 431 VAL ARG LEU LEU LYS MET LEU VAL MET PRO ILE VAL LEU SEQRES 6 A 431 ALA SER LEU VAL VAL GLY ALA ALA SER ILE SER PRO ALA SEQRES 7 A 431 ARG LEU GLY ARG VAL GLY VAL LYS ILE VAL VAL TYR TYR SEQRES 8 A 431 LEU ALA THR SER ALA MET ALA VAL PHE PHE GLY LEU ILE SEQRES 9 A 431 VAL GLY ARG LEU PHE ASN VAL GLY ALA ASN VAL ASN LEU SEQRES 10 A 431 GLY SER GLY THR GLY LYS ALA ILE GLU ALA GLN PRO PRO SEQRES 11 A 431 SER LEU VAL GLN THR LEU LEU ASN ILE VAL PRO THR ASN SEQRES 12 A 431 PRO PHE ALA SER LEU ALA LYS GLY GLU VAL LEU PRO VAL SEQRES 13 A 431 ILE PHE PHE ALA ILE ILE LEU GLY ILE ALA ILE THR TYR SEQRES 14 A 431 LEU MET ASN ARG ASN GLU GLU ARG VAL ARG LYS SER ALA SEQRES 15 A 431 GLU THR LEU LEU ARG VAL PHE ASP GLY LEU ALA GLU ALA SEQRES 16 A 431 MET TYR LEU ILE VAL GLY GLY VAL MET GLN TYR ALA PRO SEQRES 17 A 431 ILE GLY VAL PHE ALA LEU ILE ALA TYR VAL MET ALA GLU SEQRES 18 A 431 GLN GLY VAL ARG VAL VAL GLY PRO LEU ALA LYS VAL VAL SEQRES 19 A 431 GLY ALA VAL TYR THR GLY LEU PHE LEU GLN ILE VAL ILE SEQRES 20 A 431 THR TYR PHE ILE LEU LEU LYS VAL PHE GLY ILE ASP PRO SEQRES 21 A 431 ILE LYS PHE ILE ARG LYS ALA LYS ASP ALA MET ILE THR SEQRES 22 A 431 ALA PHE VAL THR ARG SER SER SER GLY THR LEU PRO VAL SEQRES 23 A 431 THR MET ARG VAL ALA GLU GLU GLU MET GLY VAL ASP LYS SEQRES 24 A 431 GLY ILE PHE SER PHE THR LEU PRO LEU GLY ALA THR ILE SEQRES 25 A 431 ASN MET ASP GLY THR ALA LEU TYR GLN GLY VAL THR VAL SEQRES 26 A 431 LEU PHE VAL ALA ASN ALA ILE GLY HIS PRO LEU THR LEU SEQRES 27 A 431 GLY GLN GLN LEU VAL VAL VAL LEU THR ALA VAL LEU ALA SEQRES 28 A 431 SER ILE GLY THR ALA GLY VAL PRO GLY ALA GLY ALA ILE SEQRES 29 A 431 MET LEU ALA MET VAL LEU GLN SER VAL GLY LEU ASP LEU SEQRES 30 A 431 THR PRO GLY SER PRO VAL ALA LEU ALA TYR ALA MET ILE SEQRES 31 A 431 LEU GLY ILE ASP ALA ILE LEU ASP MET GLY ARG THR MET SEQRES 32 A 431 VAL ASN VAL THR GLY ASP LEU ALA GLY THR VAL ILE VAL SEQRES 33 A 431 ALA LYS THR GLU LYS GLU LEU ASP GLU SER LYS TRP ILE SEQRES 34 A 431 SER HIS SEQRES 1 B 431 MET GLY LYS SER LEU LEU ARG ARG TYR LEU ASP TYR PRO SEQRES 2 B 431 VAL LEU TRP LYS ILE LEU TRP GLY LEU VAL LEU GLY ALA SEQRES 3 B 431 VAL PHE GLY LEU ILE ALA GLY HIS PHE GLY TYR ALA GLY SEQRES 4 B 431 ALA VAL LYS THR TYR ILE LYS PRO PHE GLY ASP LEU PHE SEQRES 5 B 431 VAL ARG LEU LEU LYS MET LEU VAL MET PRO ILE VAL LEU SEQRES 6 B 431 ALA SER LEU VAL VAL GLY ALA ALA SER ILE SER PRO ALA SEQRES 7 B 431 ARG LEU GLY ARG VAL GLY VAL LYS ILE VAL VAL TYR TYR SEQRES 8 B 431 LEU ALA THR SER ALA MET ALA VAL PHE PHE GLY LEU ILE SEQRES 9 B 431 VAL GLY ARG LEU PHE ASN VAL GLY ALA ASN VAL ASN LEU SEQRES 10 B 431 GLY SER GLY THR GLY LYS ALA ILE GLU ALA GLN PRO PRO SEQRES 11 B 431 SER LEU VAL GLN THR LEU LEU ASN ILE VAL PRO THR ASN SEQRES 12 B 431 PRO PHE ALA SER LEU ALA LYS GLY GLU VAL LEU PRO VAL SEQRES 13 B 431 ILE PHE PHE ALA ILE ILE LEU GLY ILE ALA ILE THR TYR SEQRES 14 B 431 LEU MET ASN ARG ASN GLU GLU ARG VAL ARG LYS SER ALA SEQRES 15 B 431 GLU THR LEU LEU ARG VAL PHE ASP GLY LEU ALA GLU ALA SEQRES 16 B 431 MET TYR LEU ILE VAL GLY GLY VAL MET GLN TYR ALA PRO SEQRES 17 B 431 ILE GLY VAL PHE ALA LEU ILE ALA TYR VAL MET ALA GLU SEQRES 18 B 431 GLN GLY VAL ARG VAL VAL GLY PRO LEU ALA LYS VAL VAL SEQRES 19 B 431 GLY ALA VAL TYR THR GLY LEU PHE LEU GLN ILE VAL ILE SEQRES 20 B 431 THR TYR PHE ILE LEU LEU LYS VAL PHE GLY ILE ASP PRO SEQRES 21 B 431 ILE LYS PHE ILE ARG LYS ALA LYS ASP ALA MET ILE THR SEQRES 22 B 431 ALA PHE VAL THR ARG SER SER SER GLY THR LEU PRO VAL SEQRES 23 B 431 THR MET ARG VAL ALA GLU GLU GLU MET GLY VAL ASP LYS SEQRES 24 B 431 GLY ILE PHE SER PHE THR LEU PRO LEU GLY ALA THR ILE SEQRES 25 B 431 ASN MET ASP GLY THR ALA LEU TYR GLN GLY VAL THR VAL SEQRES 26 B 431 LEU PHE VAL ALA ASN ALA ILE GLY HIS PRO LEU THR LEU SEQRES 27 B 431 GLY GLN GLN LEU VAL VAL VAL LEU THR ALA VAL LEU ALA SEQRES 28 B 431 SER ILE GLY THR ALA GLY VAL PRO GLY ALA GLY ALA ILE SEQRES 29 B 431 MET LEU ALA MET VAL LEU GLN SER VAL GLY LEU ASP LEU SEQRES 30 B 431 THR PRO GLY SER PRO VAL ALA LEU ALA TYR ALA MET ILE SEQRES 31 B 431 LEU GLY ILE ASP ALA ILE LEU ASP MET GLY ARG THR MET SEQRES 32 B 431 VAL ASN VAL THR GLY ASP LEU ALA GLY THR VAL ILE VAL SEQRES 33 B 431 ALA LYS THR GLU LYS GLU LEU ASP GLU SER LYS TRP ILE SEQRES 34 B 431 SER HIS SEQRES 1 C 431 MET GLY LYS SER LEU LEU ARG ARG TYR LEU ASP TYR PRO SEQRES 2 C 431 VAL LEU TRP LYS ILE LEU TRP GLY LEU VAL LEU GLY ALA SEQRES 3 C 431 VAL PHE GLY LEU ILE ALA GLY HIS PHE GLY TYR ALA GLY SEQRES 4 C 431 ALA VAL LYS THR TYR ILE LYS PRO PHE GLY ASP LEU PHE SEQRES 5 C 431 VAL ARG LEU LEU LYS MET LEU VAL MET PRO ILE VAL LEU SEQRES 6 C 431 ALA SER LEU VAL VAL GLY ALA ALA SER ILE SER PRO ALA SEQRES 7 C 431 ARG LEU GLY ARG VAL GLY VAL LYS ILE VAL VAL TYR TYR SEQRES 8 C 431 LEU ALA THR SER ALA MET ALA VAL PHE PHE GLY LEU ILE SEQRES 9 C 431 VAL GLY ARG LEU PHE ASN VAL GLY ALA ASN VAL ASN LEU SEQRES 10 C 431 GLY SER GLY THR GLY LYS ALA ILE GLU ALA GLN PRO PRO SEQRES 11 C 431 SER LEU VAL GLN THR LEU LEU ASN ILE VAL PRO THR ASN SEQRES 12 C 431 PRO PHE ALA SER LEU ALA LYS GLY GLU VAL LEU PRO VAL SEQRES 13 C 431 ILE PHE PHE ALA ILE ILE LEU GLY ILE ALA ILE THR TYR SEQRES 14 C 431 LEU MET ASN ARG ASN GLU GLU ARG VAL ARG LYS SER ALA SEQRES 15 C 431 GLU THR LEU LEU ARG VAL PHE ASP GLY LEU ALA GLU ALA SEQRES 16 C 431 MET TYR LEU ILE VAL GLY GLY VAL MET GLN TYR ALA PRO SEQRES 17 C 431 ILE GLY VAL PHE ALA LEU ILE ALA TYR VAL MET ALA GLU SEQRES 18 C 431 GLN GLY VAL ARG VAL VAL GLY PRO LEU ALA LYS VAL VAL SEQRES 19 C 431 GLY ALA VAL TYR THR GLY LEU PHE LEU GLN ILE VAL ILE SEQRES 20 C 431 THR TYR PHE ILE LEU LEU LYS VAL PHE GLY ILE ASP PRO SEQRES 21 C 431 ILE LYS PHE ILE ARG LYS ALA LYS ASP ALA MET ILE THR SEQRES 22 C 431 ALA PHE VAL THR ARG SER SER SER GLY THR LEU PRO VAL SEQRES 23 C 431 THR MET ARG VAL ALA GLU GLU GLU MET GLY VAL ASP LYS SEQRES 24 C 431 GLY ILE PHE SER PHE THR LEU PRO LEU GLY ALA THR ILE SEQRES 25 C 431 ASN MET ASP GLY THR ALA LEU TYR GLN GLY VAL THR VAL SEQRES 26 C 431 LEU PHE VAL ALA ASN ALA ILE GLY HIS PRO LEU THR LEU SEQRES 27 C 431 GLY GLN GLN LEU VAL VAL VAL LEU THR ALA VAL LEU ALA SEQRES 28 C 431 SER ILE GLY THR ALA GLY VAL PRO GLY ALA GLY ALA ILE SEQRES 29 C 431 MET LEU ALA MET VAL LEU GLN SER VAL GLY LEU ASP LEU SEQRES 30 C 431 THR PRO GLY SER PRO VAL ALA LEU ALA TYR ALA MET ILE SEQRES 31 C 431 LEU GLY ILE ASP ALA ILE LEU ASP MET GLY ARG THR MET SEQRES 32 C 431 VAL ASN VAL THR GLY ASP LEU ALA GLY THR VAL ILE VAL SEQRES 33 C 431 ALA LYS THR GLU LYS GLU LEU ASP GLU SER LYS TRP ILE SEQRES 34 C 431 SER HIS HET PG4 A 501 13 HET PG4 B 501 13 HET PG4 C 501 13 HET PG4 C 502 13 HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 4 PG4 4(C8 H18 O5) HELIX 1 1 TRP A 16 PHE A 35 1 20 HELIX 2 2 TYR A 37 ILE A 45 1 9 HELIX 3 3 ILE A 45 SER A 74 1 30 HELIX 4 4 SER A 76 ASN A 110 1 35 HELIX 5 5 VAL A 133 ASN A 138 1 6 HELIX 6 6 ASN A 143 LYS A 150 1 8 HELIX 7 7 GLU A 152 ASN A 172 1 21 HELIX 8 8 GLU A 175 GLY A 223 1 49 HELIX 9 9 VAL A 224 VAL A 227 5 4 HELIX 10 10 GLY A 228 ILE A 247 1 20 HELIX 11 11 ILE A 247 PHE A 256 1 10 HELIX 12 12 ASP A 259 ARG A 278 1 20 HELIX 13 13 THR A 283 GLU A 294 1 12 HELIX 14 14 ASP A 298 ASN A 313 1 16 HELIX 15 15 MET A 314 ILE A 332 1 19 HELIX 16 16 THR A 337 ALA A 351 1 15 HELIX 17 17 GLY A 360 VAL A 373 1 14 HELIX 18 18 SER A 381 ILE A 393 1 13 HELIX 19 19 ILE A 393 GLU A 420 1 28 HELIX 20 20 ASP A 424 TRP A 428 5 5 HELIX 21 21 TRP B 16 PHE B 35 1 20 HELIX 22 22 TYR B 37 ILE B 45 1 9 HELIX 23 23 ILE B 45 SER B 74 1 30 HELIX 24 24 SER B 76 ASN B 110 1 35 HELIX 25 25 VAL B 133 ASN B 138 1 6 HELIX 26 26 ASN B 143 LYS B 150 1 8 HELIX 27 27 GLU B 152 ASN B 172 1 21 HELIX 28 28 GLU B 175 GLY B 223 1 49 HELIX 29 29 VAL B 224 VAL B 227 5 4 HELIX 30 30 GLY B 228 ILE B 247 1 20 HELIX 31 31 ILE B 247 PHE B 256 1 10 HELIX 32 32 ASP B 259 ARG B 278 1 20 HELIX 33 33 SER B 279 GLU B 294 1 16 HELIX 34 34 ASP B 298 ASN B 313 1 16 HELIX 35 35 MET B 314 ILE B 332 1 19 HELIX 36 36 THR B 337 ALA B 351 1 15 HELIX 37 37 GLY B 360 VAL B 373 1 14 HELIX 38 38 SER B 381 LEU B 391 1 11 HELIX 39 39 ILE B 393 GLU B 420 1 28 HELIX 40 40 TRP C 16 PHE C 35 1 20 HELIX 41 41 TYR C 37 ILE C 45 1 9 HELIX 42 42 ILE C 45 SER C 74 1 30 HELIX 43 43 SER C 76 ASN C 110 1 35 HELIX 44 44 VAL C 133 ASN C 138 1 6 HELIX 45 45 ASN C 143 LYS C 150 1 8 HELIX 46 46 GLU C 152 ASN C 172 1 21 HELIX 47 47 GLU C 175 GLY C 223 1 49 HELIX 48 48 VAL C 224 VAL C 227 5 4 HELIX 49 49 GLY C 228 ILE C 247 1 20 HELIX 50 50 ILE C 247 PHE C 256 1 10 HELIX 51 51 ASP C 259 ARG C 278 1 20 HELIX 52 52 SER C 279 GLU C 294 1 16 HELIX 53 53 ASP C 298 ASN C 313 1 16 HELIX 54 54 MET C 314 ILE C 332 1 19 HELIX 55 55 THR C 337 ILE C 353 1 17 HELIX 56 56 GLY C 360 VAL C 373 1 14 HELIX 57 57 SER C 381 ILE C 393 1 13 HELIX 58 58 ILE C 393 GLU C 420 1 28 CISPEP 1 ASP A 11 TYR A 12 0 -28.46 CISPEP 2 ASN A 114 VAL A 115 0 -17.30 CISPEP 3 GLY A 122 LYS A 123 0 3.42 CISPEP 4 LEU B 10 ASP B 11 0 6.60 CISPEP 5 ASN B 114 VAL B 115 0 -25.80 CISPEP 6 PRO B 379 GLY B 380 0 -4.24 CISPEP 7 GLU B 422 LEU B 423 0 -29.29 CISPEP 8 ASP C 11 TYR C 12 0 -7.72 CISPEP 9 ASN C 114 VAL C 115 0 -29.73 CISPEP 10 GLU C 422 LEU C 423 0 -27.55 SITE 1 AC1 5 ARG A 82 LYS A 86 PHE A 256 THR A 419 SITE 2 AC1 5 ASN B 174 SITE 1 AC2 1 PRO B 77 SITE 1 AC3 3 LEU C 30 GLY C 223 VAL C 226 SITE 1 AC4 2 LEU C 198 ARG C 289 CRYST1 117.570 117.570 309.510 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008506 0.004911 0.000000 0.00000 SCALE2 0.000000 0.009821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003231 0.00000