HEADER IMMUNE SYSTEM 28-MAY-13 4KY1 TITLE HUMANIZED HP1/2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MUHP1/2 CDRS + HUMAN KAPPA B3 GERMLINE VL FRAMEWORK; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: HUMAN HEAVY IGHV1-F GERMLINE VH FRAMEWORK + HUMAN COMPND 11 KAPPA SUBGROUP 2 CONSENSUS VL FW4 REGION + HUMAN HEAVY SUBGROUP 1 COMPND 12 CONSENSUS VH FW4 REGION + HUMAN CH1 + HUMAN CL1) + VH V24S,F27Y,T32V SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO CELL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: CHO CELL KEYWDS FAB, ANTIBODY, ALPHA4 INTEGRIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.W.ARNDT,K.J.M.HANF,A.LUGOVSKOY,L.L.CHEN,M.JARPE,A.BORIACK-SJODIN, AUTHOR 2 Y.LI,H.VAN VLIJMEN,B.PEPINSKY,F.TAYLOR,L.SILVIAN,A.TAVERAS REVDAT 3 20-SEP-23 4KY1 1 REMARK REVDAT 2 22-JAN-14 4KY1 1 JRNL REVDAT 1 24-JUL-13 4KY1 0 JRNL AUTH K.J.HANF,J.W.ARNDT,L.L.CHEN,M.JARPE,P.A.BORIACK-SJODIN,Y.LI, JRNL AUTH 2 H.W.VAN VLIJMEN,R.B.PEPINSKY,K.J.SIMON,A.LUGOVSKOY JRNL TITL ANTIBODY HUMANIZATION BY REDESIGN OF JRNL TITL 2 COMPLEMENTARITY-DETERMINING REGION RESIDUES PROXIMATE TO THE JRNL TITL 3 ACCEPTOR FRAMEWORK. JRNL REF METHODS (SAN DIEGO) V. 65 68 2014 JRNL REFN ISSN 1046-2023 JRNL PMID 23816785 JRNL DOI 10.1016/J.YMETH.2013.06.024 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.457 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3362 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2214 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4582 ; 1.616 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5443 ; 0.929 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 8.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;35.908 ;25.039 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;20.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.795 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3742 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 620 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2181 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1577 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1867 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2720 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 871 ; 0.079 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3500 ; 0.672 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 1.134 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 1.696 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3942 -26.8079 -55.8478 REMARK 3 T TENSOR REMARK 3 T11: -0.0100 T22: 0.1364 REMARK 3 T33: -0.0465 T12: 0.0772 REMARK 3 T13: 0.0456 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.7569 L22: 2.8036 REMARK 3 L33: 5.8830 L12: -0.8812 REMARK 3 L13: 1.7897 L23: 0.9741 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.4258 S13: -0.1032 REMARK 3 S21: -0.1300 S22: -0.1110 S23: -0.0208 REMARK 3 S31: 0.3289 S32: 0.6621 S33: 0.0449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9905 -25.3691 -20.0670 REMARK 3 T TENSOR REMARK 3 T11: -0.0465 T22: 0.0152 REMARK 3 T33: -0.0474 T12: 0.0122 REMARK 3 T13: -0.0782 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 5.1352 L22: 1.3319 REMARK 3 L33: 5.1764 L12: -1.3878 REMARK 3 L13: -2.8215 L23: 0.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.2595 S13: -0.0290 REMARK 3 S21: 0.0939 S22: 0.0688 S23: 0.0514 REMARK 3 S31: -0.1703 S32: -0.3023 S33: -0.0126 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 121 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7130 -12.0579 -56.4442 REMARK 3 T TENSOR REMARK 3 T11: -0.0413 T22: -0.1552 REMARK 3 T33: -0.0236 T12: -0.0294 REMARK 3 T13: -0.0345 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.9606 L22: 2.7695 REMARK 3 L33: 4.6456 L12: -0.4712 REMARK 3 L13: 0.1792 L23: 0.0892 REMARK 3 S TENSOR REMARK 3 S11: -0.1364 S12: 0.5313 S13: 0.0922 REMARK 3 S21: -0.3134 S22: -0.0795 S23: -0.1111 REMARK 3 S31: -0.0895 S32: 0.2863 S33: 0.2159 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 122 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9802 -9.6795 -23.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: -0.0328 REMARK 3 T33: 0.0561 T12: -0.0493 REMARK 3 T13: -0.0292 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 8.5799 L22: 3.2682 REMARK 3 L33: 3.1851 L12: -0.2194 REMARK 3 L13: 0.3253 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.3171 S12: -0.7469 S13: 0.5211 REMARK 3 S21: 0.3874 S22: 0.3023 S23: -0.4645 REMARK 3 S31: -0.5330 S32: 0.2535 S33: 0.0147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000079937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3FZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350 AND 0.2 M REMARK 280 AMMONIUMSULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.45100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.09400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.45100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.09400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.00500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.45100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.09400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.00500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.45100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.09400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA L 51 CB - CA - C ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 30 -124.70 60.85 REMARK 500 ALA L 51 -20.10 71.44 REMARK 500 SER L 52 32.27 -170.00 REMARK 500 SER L 76 -63.09 -12.74 REMARK 500 SER L 94 -62.53 -29.85 REMARK 500 ASN L 138 71.31 58.67 REMARK 500 GLU L 143 108.92 -58.02 REMARK 500 ASN L 152 -4.02 75.58 REMARK 500 SER L 156 -75.34 -121.00 REMARK 500 LYS L 190 -53.26 -131.01 REMARK 500 ALA H 16 -177.57 -69.45 REMARK 500 CYS H 22 115.78 -172.28 REMARK 500 PRO H 41 112.82 -36.94 REMARK 500 MET H 100 15.50 -148.02 REMARK 500 SER H 103 10.52 84.95 REMARK 500 THR H 104 71.18 176.79 REMARK 500 SER H 135 -107.11 -57.20 REMARK 500 LYS H 137 -40.23 157.37 REMARK 500 SER H 140 -102.84 -120.90 REMARK 500 THR H 143 -11.09 -140.14 REMARK 500 ALA H 144 151.63 -30.51 REMARK 500 LEU H 197 118.06 168.28 REMARK 500 ASN H 212 78.14 35.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 93 SER L 94 -148.68 REMARK 500 GLY H 141 GLY H 142 -31.05 REMARK 500 GLY H 142 THR H 143 -145.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 4KY1 L 1 213 PDB 4KY1 4KY1 1 213 DBREF 4KY1 H 2 221 PDB 4KY1 4KY1 2 221 SEQRES 1 L 213 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 213 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS ALA SER SEQRES 3 L 213 GLN SER VAL THR ASN ASP VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR TYR ALA SER SEQRES 5 L 213 ASN ARG TYR THR GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN ALA GLU ASP VAL ALA VAL TYR TYR CYS GLN GLN ASP SEQRES 8 L 213 TYR SER SER PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU SEQRES 1 H 220 VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS PRO SEQRES 2 H 220 GLY ALA THR VAL LYS ILE SER CYS LYS SER SER GLY TYR SEQRES 3 H 220 ASN ILE LYS ASP VAL TYR MET HIS TRP VAL GLN GLN ALA SEQRES 4 H 220 PRO GLY LYS GLY LEU GLU TRP MET GLY ARG ILE ASP PRO SEQRES 5 H 220 ALA SER GLY ASP THR LYS TYR ASP PRO LYS PHE GLN VAL SEQRES 6 H 220 ARG VAL THR ILE THR ALA ASP THR SER THR ASP THR ALA SEQRES 7 H 220 TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 H 220 VAL TYR TYR CYS ALA THR GLY MET TRP VAL SER THR GLY SEQRES 9 H 220 TYR ALA LEU ASP PHE TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 220 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 220 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 220 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 220 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 220 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 220 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 220 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO HELIX 1 1 GLN L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 LYS L 126 1 6 HELIX 3 3 LYS L 183 HIS L 189 1 7 HELIX 4 4 ASN H 28 VAL H 32 5 5 HELIX 5 5 ASP H 61 VAL H 66 1 6 HELIX 6 6 ARG H 87 THR H 91 5 5 HELIX 7 7 SER H 164 ALA H 166 5 3 HELIX 8 8 LYS H 209 ASN H 212 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 THR L 20 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 VAL L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 SER L 114 PHE L 118 0 SHEET 2 C 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 C 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 C 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 D 4 ALA L 153 LEU L 154 0 SHEET 2 D 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 D 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 D 4 VAL L 205 ASN L 210 -1 O PHE L 209 N TYR L 192 SHEET 1 E 2 GLN H 3 GLN H 6 0 SHEET 2 E 2 CYS H 22 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 1 F 6 GLU H 10 LYS H 12 0 SHEET 2 F 6 THR H 115 VAL H 119 1 O LEU H 116 N GLU H 10 SHEET 3 F 6 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 115 SHEET 4 F 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 F 6 LEU H 45 ILE H 51 -1 O GLU H 46 N GLN H 38 SHEET 6 F 6 THR H 58 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 G 4 GLU H 10 LYS H 12 0 SHEET 2 G 4 THR H 115 VAL H 119 1 O LEU H 116 N GLU H 10 SHEET 3 G 4 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 115 SHEET 4 G 4 PHE H 110 TRP H 111 -1 O PHE H 110 N THR H 98 SHEET 1 H 3 VAL H 18 ILE H 20 0 SHEET 2 H 3 THR H 78 LEU H 83 -1 O MET H 81 N ILE H 20 SHEET 3 H 3 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 I 4 SER H 128 LEU H 132 0 SHEET 2 I 4 ALA H 145 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 I 4 TYR H 184 THR H 191 -1 O TYR H 184 N TYR H 153 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 J 4 SER H 128 LEU H 132 0 SHEET 2 J 4 ALA H 145 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 J 4 TYR H 184 THR H 191 -1 O TYR H 184 N TYR H 153 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 K 3 THR H 159 TRP H 162 0 SHEET 2 K 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 K 3 THR H 213 VAL H 219 -1 O THR H 213 N HIS H 208 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.07 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 4 CYS H 148 CYS H 204 1555 1555 2.50 CISPEP 1 SER L 7 PRO L 8 0 0.79 CISPEP 2 TYR L 140 PRO L 141 0 5.34 CISPEP 3 SER H 136 LYS H 137 0 -14.28 CISPEP 4 SER H 138 THR H 139 0 -21.70 CISPEP 5 SER H 140 GLY H 141 0 8.33 CISPEP 6 PHE H 154 PRO H 155 0 -4.06 CISPEP 7 GLU H 156 PRO H 157 0 2.88 CISPEP 8 LEU H 197 GLY H 198 0 -16.73 CRYST1 82.010 100.902 140.188 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007133 0.00000