HEADER BINDING PROTEIN, VIRAL PROTEIN 28-MAY-13 4KYD TITLE PARTIAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HPIV4B TITLE 2 PHOSPHOPROTEIN, FUSED TO MBP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN, PHOSPHOPROTEIN, COMPND 3 CHIMERIC CONSTRUCT; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP P0AEX9 RESIDUES 27-392, UNP P21738 RESIDUES 351-399; COMPND 6 SYNONYM: MBP, MMBP, MALTODEXTRIN-BINDING PROTEIN, PROTEIN P; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HUMAN PARAINFLUENZA VIRUS 4B; SOURCE 3 ORGANISM_COMMON: BACTERIA, HPIV-4B; SOURCE 4 ORGANISM_TAXID: 83333, 11227; SOURCE 5 STRAIN: K12, 68-333 STRAIN; SOURCE 6 GENE: B4034, JW3994, MALE, P, P/V; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL(A) KEYWDS 3 HELIX BUNDLE, BINDING PROTEIN, VIRAL NUCLEOCAPSID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YEGAMBARAM,E.M.M.BULLOCH,R.L.KINGSTON REVDAT 6 20-SEP-23 4KYD 1 HETSYN REVDAT 5 29-JUL-20 4KYD 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 24-JAN-18 4KYD 1 AUTHOR REVDAT 3 09-AUG-17 4KYD 1 SOURCE REMARK REVDAT 2 13-NOV-13 4KYD 1 JRNL REVDAT 1 25-SEP-13 4KYD 0 JRNL AUTH K.YEGAMBARAM,E.M.BULLOCH,R.L.KINGSTON JRNL TITL PROTEIN DOMAIN DEFINITION SHOULD ALLOW FOR CONDITIONAL JRNL TITL 2 DISORDER. JRNL REF PROTEIN SCI. V. 22 1502 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 23963781 JRNL DOI 10.1002/PRO.2336 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : -0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6465 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8783 ; 1.387 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 5.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;37.242 ;25.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1071 ;16.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 978 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4814 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3212 ; 1.220 ; 2.384 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4014 ; 1.887 ; 3.569 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3253 ; 2.233 ; 2.716 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 370 REMARK 3 RESIDUE RANGE : A 1351 A 1381 REMARK 3 ORIGIN FOR THE GROUP (A): -43.1320 38.5050 -17.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0270 REMARK 3 T33: 0.2080 T12: 0.0213 REMARK 3 T13: -0.0207 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.8227 L22: 1.5566 REMARK 3 L33: 1.1080 L12: -0.6263 REMARK 3 L13: -0.2736 L23: 0.2779 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: -0.0891 S13: 0.0460 REMARK 3 S21: 0.1450 S22: 0.0513 S23: -0.3372 REMARK 3 S31: 0.1355 S32: 0.1686 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 370 REMARK 3 RESIDUE RANGE : B 1351 B 1380 REMARK 3 ORIGIN FOR THE GROUP (A): -62.5380 4.8680 -56.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.3819 REMARK 3 T33: 0.3535 T12: 0.0830 REMARK 3 T13: -0.0627 T23: -0.1146 REMARK 3 L TENSOR REMARK 3 L11: 2.4554 L22: 3.8984 REMARK 3 L33: 0.9353 L12: 1.3035 REMARK 3 L13: 0.4467 L23: 0.7169 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0883 S13: 0.2485 REMARK 3 S21: -0.4254 S22: -0.1109 S23: 0.6285 REMARK 3 S31: -0.1783 S32: -0.2039 S33: 0.1170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000079949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF CONFOCAL REMARK 200 OPTICS : OSMIC MIRROR OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 38.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ACCESSION CODE 1HSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 %(W/V) PEG 2000 0.2 M MOPS/KOH, PH REMARK 280 7.30, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.41500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.23147 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.10400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 71.41500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.23147 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.10400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 71.41500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.23147 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.10400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.46294 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.20800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 82.46294 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.20800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 82.46294 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.20800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR REMARK. IN SOLUTION THE C-TERMINAL DOMAIN OF THE REMARK 300 HPIV4B PHOSPHOPROTEIN FORMS A MONOMERIC 3-HELIX BUNDLE. IN THE REMARK 300 CRYSTAL, DISPLACEMENT OF THE FINAL HELIX AND PARTIAL REPACKING OF REMARK 300 THE HYDROPHOBIC CORE LEAD TO FORMATION OF A HOMO-DIMERIC 4-HELIX REMARK 300 BUNDLE. WE HAVE FOUND NO EVIDENCE THAT THIS HOMO-DIMER PERSISTS IN REMARK 300 SOLUTION. SEE PRIMARY CITATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1613 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1675 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1745 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1382 REMARK 465 THR A 1383 REMARK 465 GLU A 1384 REMARK 465 GLN A 1385 REMARK 465 ASP A 1386 REMARK 465 ILE A 1387 REMARK 465 ASN A 1388 REMARK 465 SER A 1389 REMARK 465 ILE A 1390 REMARK 465 LYS A 1391 REMARK 465 THR A 1392 REMARK 465 ASN A 1393 REMARK 465 ALA A 1394 REMARK 465 LEU A 1395 REMARK 465 ARG A 1396 REMARK 465 SER A 1397 REMARK 465 ILE A 1398 REMARK 465 THR A 1399 REMARK 465 TYR A 1400 REMARK 465 ALA B 1381 REMARK 465 THR B 1382 REMARK 465 THR B 1383 REMARK 465 GLU B 1384 REMARK 465 GLN B 1385 REMARK 465 ASP B 1386 REMARK 465 ILE B 1387 REMARK 465 ASN B 1388 REMARK 465 SER B 1389 REMARK 465 ILE B 1390 REMARK 465 LYS B 1391 REMARK 465 THR B 1392 REMARK 465 ASN B 1393 REMARK 465 ALA B 1394 REMARK 465 LEU B 1395 REMARK 465 ARG B 1396 REMARK 465 SER B 1397 REMARK 465 ILE B 1398 REMARK 465 THR B 1399 REMARK 465 TYR B 1400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -166.16 -105.99 REMARK 500 LEU A 122 81.44 -150.52 REMARK 500 ALA A 168 -76.77 -79.67 REMARK 500 LYS A 239 -0.92 62.91 REMARK 500 ASP A 296 -71.11 -74.40 REMARK 500 MET A1380 114.91 -33.87 REMARK 500 THR B 31 -33.45 -140.23 REMARK 500 ASP B 55 -162.80 -122.00 REMARK 500 LEU B 122 82.71 -155.78 REMARK 500 ALA B 168 -81.18 -79.83 REMARK 500 ASN B 272 41.78 -105.25 REMARK 500 LEU B 285 49.11 -76.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KYC RELATED DB: PDB REMARK 900 RELATED ID: 4KYE RELATED DB: PDB DBREF 4KYD A 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4KYD A 1351 1399 UNP P21738 PHOSP_PI4HB 351 399 DBREF 4KYD B 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4KYD B 1351 1399 UNP P21738 PHOSP_PI4HB 351 399 SEQADV 4KYD ALA A 82 UNP P0AEX9 ASP 108 ENGINEERED MUTATION SEQADV 4KYD ALA A 83 UNP P0AEX9 LYS 109 ENGINEERED MUTATION SEQADV 4KYD ALA A 359 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 4KYD ALA A 362 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 4KYD ALA A 363 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 4KYD ASN A 367 UNP P0AEX9 LINKER SEQADV 4KYD ALA A 368 UNP P0AEX9 LINKER SEQADV 4KYD ALA A 369 UNP P0AEX9 LINKER SEQADV 4KYD ALA A 370 UNP P0AEX9 LINKER SEQADV 4KYD SER A 1368 UNP P21738 CYS 368 ENGINEERED MUTATION SEQADV 4KYD TYR A 1400 UNP P21738 EXPRESSION TAG SEQADV 4KYD ALA B 82 UNP P0AEX9 ASP 108 ENGINEERED MUTATION SEQADV 4KYD ALA B 83 UNP P0AEX9 LYS 109 ENGINEERED MUTATION SEQADV 4KYD ALA B 359 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 4KYD ALA B 362 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 4KYD ALA B 363 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 4KYD ASN B 367 UNP P0AEX9 LINKER SEQADV 4KYD ALA B 368 UNP P0AEX9 LINKER SEQADV 4KYD ALA B 369 UNP P0AEX9 LINKER SEQADV 4KYD ALA B 370 UNP P0AEX9 LINKER SEQADV 4KYD SER B 1368 UNP P21738 CYS 368 ENGINEERED MUTATION SEQADV 4KYD TYR B 1400 UNP P21738 EXPRESSION TAG SEQRES 1 A 420 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 420 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 420 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 420 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 420 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 420 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 420 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 420 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 420 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 420 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 420 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 420 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 420 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 420 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 420 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 420 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 420 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 420 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 420 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 420 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 420 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 420 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 420 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 420 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 420 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 420 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 420 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 420 SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA ALA SEQRES 29 A 420 GLN THR ASN ALA ALA ALA ASP ALA LEU LYS ILE THR VAL SEQRES 30 A 420 SER GLU MET ILE ARG ASP LEU PHE GLY ASP SER ASP LYS SEQRES 31 A 420 SER ARG LYS LEU LEU GLU SER ILE ASN MET ALA THR THR SEQRES 32 A 420 GLU GLN ASP ILE ASN SER ILE LYS THR ASN ALA LEU ARG SEQRES 33 A 420 SER ILE THR TYR SEQRES 1 B 420 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 B 420 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 B 420 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 B 420 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 B 420 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 B 420 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 B 420 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 B 420 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 B 420 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 B 420 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 B 420 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 B 420 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 B 420 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 B 420 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 B 420 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 B 420 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 B 420 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 B 420 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 B 420 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 B 420 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 B 420 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 B 420 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 B 420 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 B 420 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 B 420 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 B 420 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 B 420 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 B 420 SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA ALA SEQRES 29 B 420 GLN THR ASN ALA ALA ALA ASP ALA LEU LYS ILE THR VAL SEQRES 30 B 420 SER GLU MET ILE ARG ASP LEU PHE GLY ASP SER ASP LYS SEQRES 31 B 420 SER ARG LYS LEU LEU GLU SER ILE ASN MET ALA THR THR SEQRES 32 B 420 GLU GLN ASP ILE ASN SER ILE LYS THR ASN ALA LEU ARG SEQRES 33 B 420 SER ILE THR TYR HET GLC C 1 12 HET GLC C 2 11 HET GLC D 1 12 HET GLC D 2 11 HET MPO A1502 13 HET MPO A1503 13 HET MPO A1504 13 HET MPO A1505 13 HET MPO B1502 13 HET MPO B1503 13 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 MPO 6(C7 H15 N O4 S) FORMUL 11 HOH *195(H2 O) HELIX 1 1 GLY A 16 GLY A 32 1 17 HELIX 2 2 LYS A 42 ALA A 52 1 11 HELIX 3 3 ARG A 66 SER A 73 1 8 HELIX 4 4 ALA A 82 ASP A 87 1 6 HELIX 5 5 TYR A 90 VAL A 97 1 8 HELIX 6 6 THR A 128 GLU A 130 5 3 HELIX 7 7 GLU A 131 ALA A 141 1 11 HELIX 8 8 GLU A 153 PHE A 156 5 4 HELIX 9 9 THR A 157 ASP A 164 1 8 HELIX 10 10 ASN A 185 ASN A 201 1 17 HELIX 11 11 ASP A 209 LYS A 219 1 11 HELIX 12 12 GLY A 228 TRP A 230 5 3 HELIX 13 13 ALA A 231 SER A 238 1 8 HELIX 14 14 ASN A 272 TYR A 283 1 12 HELIX 15 15 THR A 286 LYS A 297 1 12 HELIX 16 16 LEU A 304 ALA A 312 1 9 HELIX 17 17 ASP A 314 GLY A 327 1 14 HELIX 18 18 GLN A 335 SER A 352 1 18 HELIX 19 19 THR A 356 GLY A 1366 1 31 HELIX 20 20 SER A 1368 ASN A 1379 1 12 HELIX 21 21 GLY B 16 GLY B 32 1 17 HELIX 22 22 LYS B 42 GLY B 54 1 13 HELIX 23 23 ARG B 66 SER B 73 1 8 HELIX 24 24 ALA B 82 ASP B 87 1 6 HELIX 25 25 TYR B 90 VAL B 97 1 8 HELIX 26 26 THR B 128 GLU B 130 5 3 HELIX 27 27 GLU B 131 LYS B 142 1 12 HELIX 28 28 GLU B 153 ASP B 164 1 12 HELIX 29 29 ASN B 185 ASN B 201 1 17 HELIX 30 30 ASP B 209 LYS B 219 1 11 HELIX 31 31 GLY B 228 TRP B 230 5 3 HELIX 32 32 ALA B 231 LYS B 239 1 9 HELIX 33 33 ASN B 272 TYR B 283 1 12 HELIX 34 34 THR B 286 LYS B 297 1 12 HELIX 35 35 LEU B 304 ALA B 312 1 9 HELIX 36 36 ASP B 314 GLY B 327 1 14 HELIX 37 37 GLN B 335 SER B 352 1 18 HELIX 38 38 THR B 356 GLY B 1366 1 31 HELIX 39 39 SER B 1368 ASN B 1379 1 12 SHEET 1 A 6 VAL A 35 GLU A 38 0 SHEET 2 A 6 LEU A 7 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 A 6 ILE A 59 ALA A 63 1 O ILE A 59 N TRP A 10 SHEET 4 A 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 A 6 TYR A 106 GLU A 111 -1 N GLU A 111 O GLY A 260 SHEET 6 A 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 B 5 VAL A 35 GLU A 38 0 SHEET 2 B 5 LEU A 7 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 B 5 ILE A 59 ALA A 63 1 O ILE A 59 N TRP A 10 SHEET 4 B 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 B 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 C 2 ARG A 98 TYR A 99 0 SHEET 2 C 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 D 4 SER A 145 LEU A 147 0 SHEET 2 D 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 D 4 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 4 D 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 E 2 TYR A 167 GLU A 172 0 SHEET 2 E 2 LYS A 175 GLY A 182 -1 O ASP A 177 N LYS A 170 SHEET 1 F 6 LYS B 34 GLU B 38 0 SHEET 2 F 6 LYS B 6 TRP B 10 1 N ILE B 9 O THR B 36 SHEET 3 F 6 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 F 6 PHE B 258 ILE B 266 -1 O SER B 263 N TRP B 62 SHEET 5 F 6 TYR B 106 GLU B 111 -1 N ILE B 108 O LEU B 262 SHEET 6 F 6 ALA B 301 VAL B 302 -1 O ALA B 301 N VAL B 110 SHEET 1 G 5 LYS B 34 GLU B 38 0 SHEET 2 G 5 LYS B 6 TRP B 10 1 N ILE B 9 O THR B 36 SHEET 3 G 5 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 G 5 PHE B 258 ILE B 266 -1 O SER B 263 N TRP B 62 SHEET 5 G 5 GLU B 328 ILE B 329 1 O GLU B 328 N VAL B 259 SHEET 1 H 2 ARG B 98 TYR B 99 0 SHEET 2 H 2 LYS B 102 LEU B 103 -1 O LYS B 102 N TYR B 99 SHEET 1 I 4 SER B 145 LEU B 147 0 SHEET 2 I 4 THR B 222 ASN B 227 1 O ALA B 223 N SER B 145 SHEET 3 I 4 SER B 114 ASN B 118 -1 N ILE B 116 O THR B 225 SHEET 4 I 4 TYR B 242 THR B 245 -1 O THR B 245 N LEU B 115 SHEET 1 J 2 TYR B 167 GLU B 172 0 SHEET 2 J 2 LYS B 175 GLY B 182 -1 O LYS B 175 N GLU B 172 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.46 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.48 CRYST1 142.830 142.830 114.312 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007001 0.004042 0.000000 0.00000 SCALE2 0.000000 0.008084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008748 0.00000