HEADER LYASE/LYASE INHIBITOR 29-MAY-13 4KYH TITLE CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH ZOPOLRESTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDOKETOMUTASE, GLYOXALASE I, GLX I, KETONE-ALDEHYDE MUTASE, COMPND 5 METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE; COMPND 6 EC: 4.4.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GLO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LACTOYLGLUTACHIONE LYASE, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHAI,M.YUAN,L.ZHANG,Y.CHEN,H.ZHANG,S.CHEN,Y.ZHAO REVDAT 4 29-MAY-24 4KYH 1 REMARK REVDAT 3 24-AUG-22 4KYH 1 JRNL REMARK LINK REVDAT 2 04-DEC-19 4KYH 1 REMARK REVDAT 1 07-AUG-13 4KYH 0 JRNL AUTH J.ZHAI,H.ZHANG,L.ZHANG,Y.ZHAO,S.CHEN,Y.CHEN,X.PENG,Q.LI, JRNL AUTH 2 M.YUAN,X.HU JRNL TITL ZOPOLRESTAT AS A HUMAN GLYOXALASE I INHIBITOR AND ITS JRNL TITL 2 STRUCTURAL BASIS. JRNL REF CHEMMEDCHEM V. 8 1462 2013 JRNL REFN ESSN 1860-7187 JRNL PMID 23857942 JRNL DOI 10.1002/CMDC.201300243 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 11001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2901 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3937 ; 1.731 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;40.733 ;24.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;16.165 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2320 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 0.768 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2859 ; 1.403 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 1.905 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 2.933 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05750 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18120 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 2000, 50MM MES, 0.1M NACL, PH REMARK 280 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.35800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 ILE A 183 REMARK 465 ILE A 184 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 123 O HOH A 343 2.03 REMARK 500 O ASP B 154 NZ LYS B 159 2.11 REMARK 500 OE2 GLU B 143 O HOH B 241 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 161 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 179 43.23 -146.41 REMARK 500 ALA A 181 2.06 -65.41 REMARK 500 THR B 50 -62.45 -94.11 REMARK 500 ASP B 84 109.09 -56.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 34 NE2 REMARK 620 2 GLU A 100 OE1 75.2 REMARK 620 3 HIS B 127 NE2 83.6 114.9 REMARK 620 4 GLU B 173 OE2 84.3 150.3 83.1 REMARK 620 5 HOH B 249 O 107.7 95.4 149.6 70.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 127 NE2 REMARK 620 2 GLU A 173 OE2 85.2 REMARK 620 3 GLN B 34 NE2 88.3 78.5 REMARK 620 4 GLU B 100 OE1 93.3 168.2 89.8 REMARK 620 5 HOH B 238 O 105.8 90.1 161.1 101.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZST A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZA0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH METHYL- REMARK 900 GERFELIN REMARK 900 RELATED ID: 4KYK RELATED DB: PDB DBREF 4KYH A 1 184 UNP Q9CPU0 LGUL_MOUSE 1 184 DBREF 4KYH B 1 184 UNP Q9CPU0 LGUL_MOUSE 1 184 SEQRES 1 A 184 MET ALA GLU PRO GLN PRO ALA SER SER GLY LEU THR ASP SEQRES 2 A 184 GLU THR ALA PHE SER CYS CYS SER ASP PRO ASP PRO SER SEQRES 3 A 184 THR LYS ASP PHE LEU LEU GLN GLN THR MET LEU ARG ILE SEQRES 4 A 184 LYS ASP PRO LYS LYS SER LEU ASP PHE TYR THR ARG VAL SEQRES 5 A 184 LEU GLY LEU THR LEU LEU GLN LYS LEU ASP PHE PRO ALA SEQRES 6 A 184 MET LYS PHE SER LEU TYR PHE LEU ALA TYR GLU ASP LYS SEQRES 7 A 184 ASN ASP ILE PRO LYS ASP LYS SER GLU LYS THR ALA TRP SEQRES 8 A 184 THR PHE SER ARG LYS ALA THR LEU GLU LEU THR HIS ASN SEQRES 9 A 184 TRP GLY THR GLU ASP ASP GLU THR GLN SER TYR HIS ASN SEQRES 10 A 184 GLY ASN SER ASP PRO ARG GLY PHE GLY HIS ILE GLY ILE SEQRES 11 A 184 ALA VAL PRO ASP VAL TYR SER ALA CYS LYS ARG PHE GLU SEQRES 12 A 184 GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO ASP ASP GLY SEQRES 13 A 184 LYS MET LYS GLY LEU ALA PHE ILE GLN ASP PRO ASP GLY SEQRES 14 A 184 TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS ILE ALA THR SEQRES 15 A 184 ILE ILE SEQRES 1 B 184 MET ALA GLU PRO GLN PRO ALA SER SER GLY LEU THR ASP SEQRES 2 B 184 GLU THR ALA PHE SER CYS CYS SER ASP PRO ASP PRO SER SEQRES 3 B 184 THR LYS ASP PHE LEU LEU GLN GLN THR MET LEU ARG ILE SEQRES 4 B 184 LYS ASP PRO LYS LYS SER LEU ASP PHE TYR THR ARG VAL SEQRES 5 B 184 LEU GLY LEU THR LEU LEU GLN LYS LEU ASP PHE PRO ALA SEQRES 6 B 184 MET LYS PHE SER LEU TYR PHE LEU ALA TYR GLU ASP LYS SEQRES 7 B 184 ASN ASP ILE PRO LYS ASP LYS SER GLU LYS THR ALA TRP SEQRES 8 B 184 THR PHE SER ARG LYS ALA THR LEU GLU LEU THR HIS ASN SEQRES 9 B 184 TRP GLY THR GLU ASP ASP GLU THR GLN SER TYR HIS ASN SEQRES 10 B 184 GLY ASN SER ASP PRO ARG GLY PHE GLY HIS ILE GLY ILE SEQRES 11 B 184 ALA VAL PRO ASP VAL TYR SER ALA CYS LYS ARG PHE GLU SEQRES 12 B 184 GLU LEU GLY VAL LYS PHE VAL LYS LYS PRO ASP ASP GLY SEQRES 13 B 184 LYS MET LYS GLY LEU ALA PHE ILE GLN ASP PRO ASP GLY SEQRES 14 B 184 TYR TRP ILE GLU ILE LEU ASN PRO ASN LYS ILE ALA THR SEQRES 15 B 184 ILE ILE HET ZN A 201 1 HET ZN A 202 1 HET ZST A 203 29 HETNAM ZN ZINC ION HETNAM ZST 3,4-DIHYDRO-4-OXO-3-((5-TRIFLUOROMETHYL-2- HETNAM 2 ZST BENZOTHIAZOLYL)METHYL)-1-PHTHALAZINE ACETIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 5 ZST C19 H12 F3 N3 O3 S FORMUL 6 HOH *127(H2 O) HELIX 1 1 THR A 12 CYS A 19 1 8 HELIX 2 2 ASP A 24 LYS A 28 5 5 HELIX 3 3 ASP A 41 VAL A 52 1 12 HELIX 4 4 ASP A 77 ILE A 81 5 5 HELIX 5 5 ASP A 84 PHE A 93 1 10 HELIX 6 6 GLY A 106 ASP A 110 5 5 HELIX 7 7 ASP A 134 LEU A 145 1 12 HELIX 8 8 ASN A 176 ILE A 180 5 5 HELIX 9 9 THR B 12 SER B 18 1 7 HELIX 10 10 ASP B 24 LYS B 28 5 5 HELIX 11 11 ASP B 41 VAL B 52 1 12 HELIX 12 12 ASP B 77 ILE B 81 5 5 HELIX 13 13 ASP B 84 PHE B 93 1 10 HELIX 14 14 GLY B 106 ASP B 110 5 5 HELIX 15 15 ASP B 134 LEU B 145 1 12 HELIX 16 16 ASN B 176 ILE B 184 1 9 SHEET 1 A 8 THR A 56 PHE A 63 0 SHEET 2 A 8 PHE A 68 ALA A 74 -1 O ALA A 74 N THR A 56 SHEET 3 A 8 THR A 98 ASN A 104 -1 O LEU A 101 N TYR A 71 SHEET 4 A 8 LEU A 31 ARG A 38 1 N THR A 35 O GLU A 100 SHEET 5 A 8 PHE B 125 ALA B 131 -1 O HIS B 127 N MET A 36 SHEET 6 A 8 TRP B 171 LEU B 175 1 O GLU B 173 N ILE B 130 SHEET 7 A 8 ALA B 162 GLN B 165 -1 N ILE B 164 O ILE B 172 SHEET 8 A 8 LYS B 148 LYS B 151 -1 N VAL B 150 O PHE B 163 SHEET 1 B 8 PHE A 149 LYS A 151 0 SHEET 2 B 8 ALA A 162 GLN A 165 -1 O PHE A 163 N LYS A 151 SHEET 3 B 8 TRP A 171 LEU A 175 -1 O ILE A 174 N ALA A 162 SHEET 4 B 8 PHE A 125 ALA A 131 1 N ILE A 130 O GLU A 173 SHEET 5 B 8 LEU B 31 ARG B 38 -1 O MET B 36 N HIS A 127 SHEET 6 B 8 THR B 98 ASN B 104 1 O THR B 102 N LEU B 37 SHEET 7 B 8 PHE B 68 ALA B 74 -1 N TYR B 71 O LEU B 101 SHEET 8 B 8 THR B 56 PHE B 63 -1 N LEU B 58 O PHE B 72 LINK NE2 GLN A 34 ZN ZN A 201 1555 1555 2.01 LINK OE1 GLU A 100 ZN ZN A 201 1555 1555 2.09 LINK NE2 HIS A 127 ZN ZN A 202 1555 1555 2.36 LINK OE2 GLU A 173 ZN ZN A 202 1555 1555 1.96 LINK ZN ZN A 201 NE2 HIS B 127 1555 1555 2.11 LINK ZN ZN A 201 OE2 GLU B 173 1555 1555 2.65 LINK ZN ZN A 201 O HOH B 249 1555 1555 2.59 LINK ZN ZN A 202 NE2 GLN B 34 1555 1555 1.96 LINK ZN ZN A 202 OE1 GLU B 100 1555 1555 1.86 LINK ZN ZN A 202 O HOH B 238 1555 1555 2.43 CISPEP 1 ASP A 121 PRO A 122 0 1.47 CISPEP 2 ASP B 121 PRO B 122 0 -9.19 SITE 1 AC1 5 GLN A 34 GLU A 100 HIS B 127 GLU B 173 SITE 2 AC1 5 HOH B 249 SITE 1 AC2 5 HIS A 127 GLU A 173 GLN B 34 GLU B 100 SITE 2 AC2 5 HOH B 238 SITE 1 AC3 10 MET A 36 ARG A 38 PHE A 68 GLU A 100 SITE 2 AC3 10 THR A 102 ASN A 104 HOH A 326 HOH A 348 SITE 3 AC3 10 ARG B 123 LYS B 151 CRYST1 41.781 64.716 65.361 90.00 101.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023934 0.000000 0.005044 0.00000 SCALE2 0.000000 0.015452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015636 0.00000