data_4KZ1 # _entry.id 4KZ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KZ1 pdb_00004kz1 10.2210/pdb4kz1/pdb RCSB RCSB079973 ? ? WWPDB D_1000079973 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4jf8 'soluble domain of TrwG from B. birtlesii' unspecified PDB 2cc3 'soluble domain of VirB8 from Agrobacterium tumefaciens' unspecified PDB 2bhm 'soluble domain of VirB8 from Brucella suis' unspecified TargetTrack SSGCID-BagrA.18388.a . unspecified PDB 4LSO 'VirB8 from Bartonella quintana' unspecified # _pdbx_database_status.entry_id 4KZ1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems.' _citation.journal_abbrev MBio _citation.journal_volume 6 _citation.page_first e01867 _citation.page_last e01815 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2150-7511 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26646013 _citation.pdbx_database_id_DOI 10.1128/mBio.01867-15 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gillespie, J.J.' 1 ? primary 'Phan, I.Q.' 2 ? primary 'Scheib, H.' 3 ? primary 'Subramanian, S.' 4 ? primary 'Edwards, T.E.' 5 ? primary 'Lehman, S.S.' 6 ? primary 'Piitulainen, H.' 7 ? primary 'Rahman, M.S.' 8 ? primary 'Rennoll-Bankert, K.E.' 9 ? primary 'Staker, B.L.' 10 ? primary 'Taira, S.' 11 ? primary 'Stacy, R.' 12 ? primary 'Myler, P.J.' 13 ? primary 'Azad, A.F.' 14 ? primary 'Pulliainen, A.T.' 15 ? # _cell.length_a 60.620 _cell.length_b 60.620 _cell.length_c 124.570 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4KZ1 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4KZ1 _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VirB8 protein' 20931.441 1 ? ? 'soluble domain (UNP residues 51-222)' ? 2 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMALTPLKTVEPFVIRVDNSTGIIDTVSALKESPNDYDEAITRYFASQYVRAREGFQASEAENNFRLVSLLSS PKEQNRFGKWYAGNNPESPQNIYHNMIATVTIKSISFISKDLIQVRYYKTVRDFNEKENISHWISILNFSYVNAHISTSD RLINPLGFQVSEYRSDPEVIK ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMALTPLKTVEPFVIRVDNSTGIIDTVSALKESPNDYDEAITRYFASQYVRAREGFQASEAENNFRLVSLLSS PKEQNRFGKWYAGNNPESPQNIYHNMIATVTIKSISFISKDLIQVRYYKTVRDFNEKENISHWISILNFSYVNAHISTSD RLINPLGFQVSEYRSDPEVIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SSGCID-BagrA.18388.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 ALA n 1 11 LEU n 1 12 THR n 1 13 PRO n 1 14 LEU n 1 15 LYS n 1 16 THR n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 PHE n 1 21 VAL n 1 22 ILE n 1 23 ARG n 1 24 VAL n 1 25 ASP n 1 26 ASN n 1 27 SER n 1 28 THR n 1 29 GLY n 1 30 ILE n 1 31 ILE n 1 32 ASP n 1 33 THR n 1 34 VAL n 1 35 SER n 1 36 ALA n 1 37 LEU n 1 38 LYS n 1 39 GLU n 1 40 SER n 1 41 PRO n 1 42 ASN n 1 43 ASP n 1 44 TYR n 1 45 ASP n 1 46 GLU n 1 47 ALA n 1 48 ILE n 1 49 THR n 1 50 ARG n 1 51 TYR n 1 52 PHE n 1 53 ALA n 1 54 SER n 1 55 GLN n 1 56 TYR n 1 57 VAL n 1 58 ARG n 1 59 ALA n 1 60 ARG n 1 61 GLU n 1 62 GLY n 1 63 PHE n 1 64 GLN n 1 65 ALA n 1 66 SER n 1 67 GLU n 1 68 ALA n 1 69 GLU n 1 70 ASN n 1 71 ASN n 1 72 PHE n 1 73 ARG n 1 74 LEU n 1 75 VAL n 1 76 SER n 1 77 LEU n 1 78 LEU n 1 79 SER n 1 80 SER n 1 81 PRO n 1 82 LYS n 1 83 GLU n 1 84 GLN n 1 85 ASN n 1 86 ARG n 1 87 PHE n 1 88 GLY n 1 89 LYS n 1 90 TRP n 1 91 TYR n 1 92 ALA n 1 93 GLY n 1 94 ASN n 1 95 ASN n 1 96 PRO n 1 97 GLU n 1 98 SER n 1 99 PRO n 1 100 GLN n 1 101 ASN n 1 102 ILE n 1 103 TYR n 1 104 HIS n 1 105 ASN n 1 106 MET n 1 107 ILE n 1 108 ALA n 1 109 THR n 1 110 VAL n 1 111 THR n 1 112 ILE n 1 113 LYS n 1 114 SER n 1 115 ILE n 1 116 SER n 1 117 PHE n 1 118 ILE n 1 119 SER n 1 120 LYS n 1 121 ASP n 1 122 LEU n 1 123 ILE n 1 124 GLN n 1 125 VAL n 1 126 ARG n 1 127 TYR n 1 128 TYR n 1 129 LYS n 1 130 THR n 1 131 VAL n 1 132 ARG n 1 133 ASP n 1 134 PHE n 1 135 ASN n 1 136 GLU n 1 137 LYS n 1 138 GLU n 1 139 ASN n 1 140 ILE n 1 141 SER n 1 142 HIS n 1 143 TRP n 1 144 ILE n 1 145 SER n 1 146 ILE n 1 147 LEU n 1 148 ASN n 1 149 PHE n 1 150 SER n 1 151 TYR n 1 152 VAL n 1 153 ASN n 1 154 ALA n 1 155 HIS n 1 156 ILE n 1 157 SER n 1 158 THR n 1 159 SER n 1 160 ASP n 1 161 ARG n 1 162 LEU n 1 163 ILE n 1 164 ASN n 1 165 PRO n 1 166 LEU n 1 167 GLY n 1 168 PHE n 1 169 GLN n 1 170 VAL n 1 171 SER n 1 172 GLU n 1 173 TYR n 1 174 ARG n 1 175 SER n 1 176 ASP n 1 177 PRO n 1 178 GLU n 1 179 VAL n 1 180 ILE n 1 181 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Bgr_14870, virB8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain as4aup _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bartonella grahamii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 634504 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BG1861 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C6AER9_BARGA _struct_ref.pdbx_db_accession C6AER9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ALTPLKTVEPFVIRVDNSTGIIDTVSALKESPNDYDEAITRYFASQYVRAREGFQASEAENNFRLVSLLSSPKEQNRFGK WYAGNNPESPQNIYHNMIATVTIKSISFISKDLIQVRYYKTVRDFNEKENISHWISILNFSYVNAHISTSDRLINPLGFQ VSEYRSDPEVIK ; _struct_ref.pdbx_align_begin 51 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KZ1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C6AER9 _struct_ref_seq.db_align_beg 51 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KZ1 MET A 1 ? UNP C6AER9 ? ? 'expression tag' -7 1 1 4KZ1 ALA A 2 ? UNP C6AER9 ? ? 'expression tag' -6 2 1 4KZ1 HIS A 3 ? UNP C6AER9 ? ? 'expression tag' -5 3 1 4KZ1 HIS A 4 ? UNP C6AER9 ? ? 'expression tag' -4 4 1 4KZ1 HIS A 5 ? UNP C6AER9 ? ? 'expression tag' -3 5 1 4KZ1 HIS A 6 ? UNP C6AER9 ? ? 'expression tag' -2 6 1 4KZ1 HIS A 7 ? UNP C6AER9 ? ? 'expression tag' -1 7 1 4KZ1 HIS A 8 ? UNP C6AER9 ? ? 'expression tag' 0 8 1 4KZ1 MET A 9 ? UNP C6AER9 ? ? 'expression tag' 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KZ1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;BagrA.18388.a.B2.PW37031 at 6.35 mg/mL against MCSG1 screen condition E6, 0.2 M potassium sulfate, 20% PEG 3350 with 15% ethylene glycol as cryo-protectant; crystal tracking ID 238817e6, unique puck ID acy5-8, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-05-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9774 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9774 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 4KZ1 _reflns.d_resolution_high 2.550 _reflns.number_obs 8063 _reflns.pdbx_Rmerge_I_obs 0.030 _reflns.pdbx_netI_over_sigmaI 42.960 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 66.526 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.number_all 8095 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.550 2.620 4024 ? 579 0.506 3.820 ? ? ? ? ? 99.700 1 1 2.620 2.690 3874 ? 562 0.386 4.910 ? ? ? ? ? 100.000 2 1 2.690 2.770 3874 ? 560 0.307 6.260 ? ? ? ? ? 100.000 3 1 2.770 2.850 3615 ? 524 0.220 8.680 ? ? ? ? ? 99.800 4 1 2.850 2.940 3592 ? 526 0.157 12.070 ? ? ? ? ? 99.800 5 1 2.940 3.050 3430 ? 506 0.119 15.910 ? ? ? ? ? 100.000 6 1 3.050 3.160 3306 ? 484 0.086 21.740 ? ? ? ? ? 99.800 7 1 3.160 3.290 3199 ? 475 0.056 31.130 ? ? ? ? ? 100.000 8 1 3.290 3.440 2995 ? 445 0.042 40.460 ? ? ? ? ? 100.000 9 1 3.440 3.610 2942 ? 444 0.033 50.470 ? ? ? ? ? 100.000 10 1 3.610 3.800 2728 ? 416 0.026 59.970 ? ? ? ? ? 100.000 11 1 3.800 4.030 2497 ? 395 0.021 70.870 ? ? ? ? ? 99.700 12 1 4.030 4.310 2350 ? 380 0.018 79.800 ? ? ? ? ? 99.700 13 1 4.310 4.660 2177 ? 351 0.016 92.120 ? ? ? ? ? 100.000 14 1 4.660 5.100 1958 ? 327 0.017 92.090 ? ? ? ? ? 100.000 15 1 5.100 5.700 1768 ? 294 0.016 90.260 ? ? ? ? ? 99.000 16 1 5.700 6.580 1733 ? 275 0.016 94.100 ? ? ? ? ? 100.000 17 1 6.580 8.060 1422 ? 229 0.014 105.670 ? ? ? ? ? 100.000 18 1 8.060 11.400 1077 ? 189 0.011 109.870 ? ? ? ? ? 97.900 19 1 11.400 ? 468 ? 102 0.012 99.540 ? ? ? ? ? 85.000 20 1 # _refine.entry_id 4KZ1 _refine.ls_d_res_high 2.5500 _refine.ls_d_res_low 35.3400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6200 _refine.ls_number_reflns_obs 8063 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2051 _refine.ls_R_factor_R_work 0.2030 _refine.ls_wR_factor_R_work 0.1869 _refine.ls_R_factor_R_free 0.2491 _refine.ls_wR_factor_R_free 0.2369 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 369 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 65.4664 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.8900 _refine.aniso_B[2][2] -0.8900 _refine.aniso_B[3][3] 1.7800 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9520 _refine.correlation_coeff_Fo_to_Fc_free 0.9220 _refine.overall_SU_R_Cruickshank_DPI 0.3030 _refine.overall_SU_R_free 0.2438 _refine.pdbx_overall_ESU_R 0.3030 _refine.pdbx_overall_ESU_R_Free 0.2440 _refine.overall_SU_ML 0.1760 _refine.overall_SU_B 17.1080 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 4jf8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8218 _refine.B_iso_max 126.960 _refine.B_iso_min 42.590 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1076 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 1096 _refine_hist.d_res_high 2.5500 _refine_hist.d_res_low 35.3400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1103 0.010 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 979 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1502 1.346 1.920 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2230 0.758 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 134 5.931 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 58 33.246 23.621 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 165 16.808 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 13.424 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 162 0.082 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1290 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 288 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 539 2.786 4.832 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 538 2.768 4.826 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 672 4.289 7.234 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.5500 _refine_ls_shell.d_res_low 2.6160 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8300 _refine_ls_shell.number_reflns_R_work 548 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3370 _refine_ls_shell.R_factor_R_free 0.3990 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 579 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KZ1 _struct.title 'Crystal structure of the soluble domain of VirB8 from Bartonella grahamii' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KZ1 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, type IV secretion sequence, host-specific pathogen, Trw family, immune response, cell adhesion, weak dimer, PROTEIN TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 45 ? GLY A 62 ? ASP A 37 GLY A 54 1 ? 18 HELX_P HELX_P2 2 GLN A 64 ? SER A 66 ? GLN A 56 SER A 58 5 ? 3 HELX_P HELX_P3 3 GLU A 67 ? LEU A 78 ? GLU A 59 LEU A 70 1 ? 12 HELX_P HELX_P4 4 SER A 80 ? ALA A 92 ? SER A 72 ALA A 84 1 ? 13 HELX_P HELX_P5 5 SER A 98 ? TYR A 103 ? SER A 90 TYR A 95 1 ? 6 HELX_P HELX_P6 6 SER A 159 ? ILE A 163 ? SER A 151 ILE A 155 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 107 ? SER A 119 ? ILE A 99 SER A 111 A 2 LEU A 122 ? ARG A 132 ? LEU A 114 ARG A 124 A 3 GLU A 138 ? TYR A 151 ? GLU A 130 TYR A 143 A 4 PHE A 168 ? PRO A 177 ? PHE A 160 PRO A 169 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 111 ? N THR A 103 O TYR A 128 ? O TYR A 120 A 2 3 N VAL A 125 ? N VAL A 117 O SER A 145 ? O SER A 137 A 3 4 N SER A 150 ? N SER A 142 O GLN A 169 ? O GLN A 161 # _atom_sites.entry_id 4KZ1 _atom_sites.fract_transf_matrix[1][1] 0.016496 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016496 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008028 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 ? ? ? A . n A 1 8 HIS 8 0 ? ? ? A . n A 1 9 MET 9 1 ? ? ? A . n A 1 10 ALA 10 2 ? ? ? A . n A 1 11 LEU 11 3 ? ? ? A . n A 1 12 THR 12 4 ? ? ? A . n A 1 13 PRO 13 5 ? ? ? A . n A 1 14 LEU 14 6 ? ? ? A . n A 1 15 LYS 15 7 ? ? ? A . n A 1 16 THR 16 8 ? ? ? A . n A 1 17 VAL 17 9 ? ? ? A . n A 1 18 GLU 18 10 ? ? ? A . n A 1 19 PRO 19 11 ? ? ? A . n A 1 20 PHE 20 12 ? ? ? A . n A 1 21 VAL 21 13 ? ? ? A . n A 1 22 ILE 22 14 ? ? ? A . n A 1 23 ARG 23 15 ? ? ? A . n A 1 24 VAL 24 16 ? ? ? A . n A 1 25 ASP 25 17 ? ? ? A . n A 1 26 ASN 26 18 ? ? ? A . n A 1 27 SER 27 19 ? ? ? A . n A 1 28 THR 28 20 ? ? ? A . n A 1 29 GLY 29 21 ? ? ? A . n A 1 30 ILE 30 22 ? ? ? A . n A 1 31 ILE 31 23 ? ? ? A . n A 1 32 ASP 32 24 ? ? ? A . n A 1 33 THR 33 25 ? ? ? A . n A 1 34 VAL 34 26 ? ? ? A . n A 1 35 SER 35 27 ? ? ? A . n A 1 36 ALA 36 28 ? ? ? A . n A 1 37 LEU 37 29 ? ? ? A . n A 1 38 LYS 38 30 ? ? ? A . n A 1 39 GLU 39 31 ? ? ? A . n A 1 40 SER 40 32 ? ? ? A . n A 1 41 PRO 41 33 ? ? ? A . n A 1 42 ASN 42 34 ? ? ? A . n A 1 43 ASP 43 35 ? ? ? A . n A 1 44 TYR 44 36 36 TYR TYR A . n A 1 45 ASP 45 37 37 ASP ASP A . n A 1 46 GLU 46 38 38 GLU GLU A . n A 1 47 ALA 47 39 39 ALA ALA A . n A 1 48 ILE 48 40 40 ILE ILE A . n A 1 49 THR 49 41 41 THR THR A . n A 1 50 ARG 50 42 42 ARG ARG A . n A 1 51 TYR 51 43 43 TYR TYR A . n A 1 52 PHE 52 44 44 PHE PHE A . n A 1 53 ALA 53 45 45 ALA ALA A . n A 1 54 SER 54 46 46 SER SER A . n A 1 55 GLN 55 47 47 GLN GLN A . n A 1 56 TYR 56 48 48 TYR TYR A . n A 1 57 VAL 57 49 49 VAL VAL A . n A 1 58 ARG 58 50 50 ARG ARG A . n A 1 59 ALA 59 51 51 ALA ALA A . n A 1 60 ARG 60 52 52 ARG ARG A . n A 1 61 GLU 61 53 53 GLU GLU A . n A 1 62 GLY 62 54 54 GLY GLY A . n A 1 63 PHE 63 55 55 PHE PHE A . n A 1 64 GLN 64 56 56 GLN GLN A . n A 1 65 ALA 65 57 57 ALA ALA A . n A 1 66 SER 66 58 58 SER SER A . n A 1 67 GLU 67 59 59 GLU GLU A . n A 1 68 ALA 68 60 60 ALA ALA A . n A 1 69 GLU 69 61 61 GLU GLU A . n A 1 70 ASN 70 62 62 ASN ASN A . n A 1 71 ASN 71 63 63 ASN ASN A . n A 1 72 PHE 72 64 64 PHE PHE A . n A 1 73 ARG 73 65 65 ARG ARG A . n A 1 74 LEU 74 66 66 LEU LEU A . n A 1 75 VAL 75 67 67 VAL VAL A . n A 1 76 SER 76 68 68 SER SER A . n A 1 77 LEU 77 69 69 LEU LEU A . n A 1 78 LEU 78 70 70 LEU LEU A . n A 1 79 SER 79 71 71 SER SER A . n A 1 80 SER 80 72 72 SER SER A . n A 1 81 PRO 81 73 73 PRO PRO A . n A 1 82 LYS 82 74 74 LYS LYS A . n A 1 83 GLU 83 75 75 GLU GLU A . n A 1 84 GLN 84 76 76 GLN GLN A . n A 1 85 ASN 85 77 77 ASN ASN A . n A 1 86 ARG 86 78 78 ARG ARG A . n A 1 87 PHE 87 79 79 PHE PHE A . n A 1 88 GLY 88 80 80 GLY GLY A . n A 1 89 LYS 89 81 81 LYS LYS A . n A 1 90 TRP 90 82 82 TRP TRP A . n A 1 91 TYR 91 83 83 TYR TYR A . n A 1 92 ALA 92 84 84 ALA ALA A . n A 1 93 GLY 93 85 85 GLY GLY A . n A 1 94 ASN 94 86 86 ASN ASN A . n A 1 95 ASN 95 87 87 ASN ASN A . n A 1 96 PRO 96 88 88 PRO PRO A . n A 1 97 GLU 97 89 89 GLU GLU A . n A 1 98 SER 98 90 90 SER SER A . n A 1 99 PRO 99 91 91 PRO PRO A . n A 1 100 GLN 100 92 92 GLN GLN A . n A 1 101 ASN 101 93 93 ASN ASN A . n A 1 102 ILE 102 94 94 ILE ILE A . n A 1 103 TYR 103 95 95 TYR TYR A . n A 1 104 HIS 104 96 96 HIS HIS A . n A 1 105 ASN 105 97 97 ASN ASN A . n A 1 106 MET 106 98 98 MET MET A . n A 1 107 ILE 107 99 99 ILE ILE A . n A 1 108 ALA 108 100 100 ALA ALA A . n A 1 109 THR 109 101 101 THR THR A . n A 1 110 VAL 110 102 102 VAL VAL A . n A 1 111 THR 111 103 103 THR THR A . n A 1 112 ILE 112 104 104 ILE ILE A . n A 1 113 LYS 113 105 105 LYS LYS A . n A 1 114 SER 114 106 106 SER SER A . n A 1 115 ILE 115 107 107 ILE ILE A . n A 1 116 SER 116 108 108 SER SER A . n A 1 117 PHE 117 109 109 PHE PHE A . n A 1 118 ILE 118 110 110 ILE ILE A . n A 1 119 SER 119 111 111 SER SER A . n A 1 120 LYS 120 112 112 LYS LYS A . n A 1 121 ASP 121 113 113 ASP ASP A . n A 1 122 LEU 122 114 114 LEU LEU A . n A 1 123 ILE 123 115 115 ILE ILE A . n A 1 124 GLN 124 116 116 GLN GLN A . n A 1 125 VAL 125 117 117 VAL VAL A . n A 1 126 ARG 126 118 118 ARG ARG A . n A 1 127 TYR 127 119 119 TYR TYR A . n A 1 128 TYR 128 120 120 TYR TYR A . n A 1 129 LYS 129 121 121 LYS LYS A . n A 1 130 THR 130 122 122 THR THR A . n A 1 131 VAL 131 123 123 VAL VAL A . n A 1 132 ARG 132 124 124 ARG ARG A . n A 1 133 ASP 133 125 125 ASP ASP A . n A 1 134 PHE 134 126 126 PHE PHE A . n A 1 135 ASN 135 127 127 ASN ASN A . n A 1 136 GLU 136 128 128 GLU GLU A . n A 1 137 LYS 137 129 129 LYS LYS A . n A 1 138 GLU 138 130 130 GLU GLU A . n A 1 139 ASN 139 131 131 ASN ASN A . n A 1 140 ILE 140 132 132 ILE ILE A . n A 1 141 SER 141 133 133 SER SER A . n A 1 142 HIS 142 134 134 HIS HIS A . n A 1 143 TRP 143 135 135 TRP TRP A . n A 1 144 ILE 144 136 136 ILE ILE A . n A 1 145 SER 145 137 137 SER SER A . n A 1 146 ILE 146 138 138 ILE ILE A . n A 1 147 LEU 147 139 139 LEU LEU A . n A 1 148 ASN 148 140 140 ASN ASN A . n A 1 149 PHE 149 141 141 PHE PHE A . n A 1 150 SER 150 142 142 SER SER A . n A 1 151 TYR 151 143 143 TYR TYR A . n A 1 152 VAL 152 144 144 VAL VAL A . n A 1 153 ASN 153 145 145 ASN ASN A . n A 1 154 ALA 154 146 146 ALA ALA A . n A 1 155 HIS 155 147 147 HIS HIS A . n A 1 156 ILE 156 148 148 ILE ILE A . n A 1 157 SER 157 149 149 SER SER A . n A 1 158 THR 158 150 150 THR THR A . n A 1 159 SER 159 151 151 SER SER A . n A 1 160 ASP 160 152 152 ASP ASP A . n A 1 161 ARG 161 153 153 ARG ARG A . n A 1 162 LEU 162 154 154 LEU LEU A . n A 1 163 ILE 163 155 155 ILE ILE A . n A 1 164 ASN 164 156 156 ASN ASN A . n A 1 165 PRO 165 157 157 PRO PRO A . n A 1 166 LEU 166 158 158 LEU LEU A . n A 1 167 GLY 167 159 159 GLY GLY A . n A 1 168 PHE 168 160 160 PHE PHE A . n A 1 169 GLN 169 161 161 GLN GLN A . n A 1 170 VAL 170 162 162 VAL VAL A . n A 1 171 SER 171 163 163 SER SER A . n A 1 172 GLU 172 164 164 GLU GLU A . n A 1 173 TYR 173 165 165 TYR TYR A . n A 1 174 ARG 174 166 166 ARG ARG A . n A 1 175 SER 175 167 167 SER SER A . n A 1 176 ASP 176 168 168 ASP ASP A . n A 1 177 PRO 177 169 169 PRO PRO A . n A 1 178 GLU 178 170 170 GLU GLU A . n A 1 179 VAL 179 171 ? ? ? A . n A 1 180 ILE 180 172 ? ? ? A . n A 1 181 LYS 181 173 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -11 ? 1 'SSA (A^2)' 13480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 62.2850000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-12 2 'Structure model' 1 1 2015-12-16 3 'Structure model' 1 2 2016-03-23 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -7.1933 _pdbx_refine_tls.origin_y 14.3623 _pdbx_refine_tls.origin_z 20.7116 _pdbx_refine_tls.T[1][1] 0.1887 _pdbx_refine_tls.T[2][2] 0.0768 _pdbx_refine_tls.T[3][3] 0.1401 _pdbx_refine_tls.T[1][2] 0.0225 _pdbx_refine_tls.T[1][3] 0.0331 _pdbx_refine_tls.T[2][3] -0.0258 _pdbx_refine_tls.L[1][1] 0.6418 _pdbx_refine_tls.L[2][2] 1.8640 _pdbx_refine_tls.L[3][3] 1.8256 _pdbx_refine_tls.L[1][2] -0.0454 _pdbx_refine_tls.L[1][3] 0.0183 _pdbx_refine_tls.L[2][3] -0.7635 _pdbx_refine_tls.S[1][1] 0.0474 _pdbx_refine_tls.S[2][2] 0.0307 _pdbx_refine_tls.S[3][3] -0.0781 _pdbx_refine_tls.S[1][2] -0.0605 _pdbx_refine_tls.S[1][3] 0.0583 _pdbx_refine_tls.S[2][3] 0.0157 _pdbx_refine_tls.S[2][1] -0.2835 _pdbx_refine_tls.S[3][1] 0.0855 _pdbx_refine_tls.S[3][2] 0.2875 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 36 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 170 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 4KZ1 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 41.520 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 41.520 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.5.2 'Mon Oct 8 12:49:53 2012 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 127 ? ? -80.25 -152.87 2 1 LYS A 129 ? ? -168.73 116.00 3 1 SER A 149 ? ? -49.09 154.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 61 ? CG ? A GLU 69 CG 2 1 Y 1 A GLU 61 ? CD ? A GLU 69 CD 3 1 Y 1 A GLU 61 ? OE1 ? A GLU 69 OE1 4 1 Y 1 A GLU 61 ? OE2 ? A GLU 69 OE2 5 1 Y 1 A LYS 74 ? CG ? A LYS 82 CG 6 1 Y 1 A LYS 74 ? CD ? A LYS 82 CD 7 1 Y 1 A LYS 74 ? CE ? A LYS 82 CE 8 1 Y 1 A LYS 74 ? NZ ? A LYS 82 NZ 9 1 Y 1 A LYS 81 ? CG ? A LYS 89 CG 10 1 Y 1 A LYS 81 ? CD ? A LYS 89 CD 11 1 Y 1 A LYS 81 ? CE ? A LYS 89 CE 12 1 Y 1 A LYS 81 ? NZ ? A LYS 89 NZ 13 1 Y 1 A LYS 112 ? CG ? A LYS 120 CG 14 1 Y 1 A LYS 112 ? CD ? A LYS 120 CD 15 1 Y 1 A LYS 112 ? CE ? A LYS 120 CE 16 1 Y 1 A LYS 112 ? NZ ? A LYS 120 NZ 17 1 Y 1 A ARG 124 ? CG ? A ARG 132 CG 18 1 Y 1 A ARG 124 ? CD ? A ARG 132 CD 19 1 Y 1 A ARG 124 ? NE ? A ARG 132 NE 20 1 Y 1 A ARG 124 ? CZ ? A ARG 132 CZ 21 1 Y 1 A ARG 124 ? NH1 ? A ARG 132 NH1 22 1 Y 1 A ARG 124 ? NH2 ? A ARG 132 NH2 23 1 Y 1 A PHE 126 ? CG ? A PHE 134 CG 24 1 Y 1 A PHE 126 ? CD1 ? A PHE 134 CD1 25 1 Y 1 A PHE 126 ? CD2 ? A PHE 134 CD2 26 1 Y 1 A PHE 126 ? CE1 ? A PHE 134 CE1 27 1 Y 1 A PHE 126 ? CE2 ? A PHE 134 CE2 28 1 Y 1 A PHE 126 ? CZ ? A PHE 134 CZ 29 1 Y 1 A ASN 127 ? CG ? A ASN 135 CG 30 1 Y 1 A ASN 127 ? OD1 ? A ASN 135 OD1 31 1 Y 1 A ASN 127 ? ND2 ? A ASN 135 ND2 32 1 Y 1 A GLU 128 ? CG ? A GLU 136 CG 33 1 Y 1 A GLU 128 ? CD ? A GLU 136 CD 34 1 Y 1 A GLU 128 ? OE1 ? A GLU 136 OE1 35 1 Y 1 A GLU 128 ? OE2 ? A GLU 136 OE2 36 1 Y 1 A LYS 129 ? CG ? A LYS 137 CG 37 1 Y 1 A LYS 129 ? CD ? A LYS 137 CD 38 1 Y 1 A LYS 129 ? CE ? A LYS 137 CE 39 1 Y 1 A LYS 129 ? NZ ? A LYS 137 NZ 40 1 Y 1 A ASN 145 ? CG ? A ASN 153 CG 41 1 Y 1 A ASN 145 ? OD1 ? A ASN 153 OD1 42 1 Y 1 A ASN 145 ? ND2 ? A ASN 153 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A HIS -1 ? A HIS 7 8 1 Y 1 A HIS 0 ? A HIS 8 9 1 Y 1 A MET 1 ? A MET 9 10 1 Y 1 A ALA 2 ? A ALA 10 11 1 Y 1 A LEU 3 ? A LEU 11 12 1 Y 1 A THR 4 ? A THR 12 13 1 Y 1 A PRO 5 ? A PRO 13 14 1 Y 1 A LEU 6 ? A LEU 14 15 1 Y 1 A LYS 7 ? A LYS 15 16 1 Y 1 A THR 8 ? A THR 16 17 1 Y 1 A VAL 9 ? A VAL 17 18 1 Y 1 A GLU 10 ? A GLU 18 19 1 Y 1 A PRO 11 ? A PRO 19 20 1 Y 1 A PHE 12 ? A PHE 20 21 1 Y 1 A VAL 13 ? A VAL 21 22 1 Y 1 A ILE 14 ? A ILE 22 23 1 Y 1 A ARG 15 ? A ARG 23 24 1 Y 1 A VAL 16 ? A VAL 24 25 1 Y 1 A ASP 17 ? A ASP 25 26 1 Y 1 A ASN 18 ? A ASN 26 27 1 Y 1 A SER 19 ? A SER 27 28 1 Y 1 A THR 20 ? A THR 28 29 1 Y 1 A GLY 21 ? A GLY 29 30 1 Y 1 A ILE 22 ? A ILE 30 31 1 Y 1 A ILE 23 ? A ILE 31 32 1 Y 1 A ASP 24 ? A ASP 32 33 1 Y 1 A THR 25 ? A THR 33 34 1 Y 1 A VAL 26 ? A VAL 34 35 1 Y 1 A SER 27 ? A SER 35 36 1 Y 1 A ALA 28 ? A ALA 36 37 1 Y 1 A LEU 29 ? A LEU 37 38 1 Y 1 A LYS 30 ? A LYS 38 39 1 Y 1 A GLU 31 ? A GLU 39 40 1 Y 1 A SER 32 ? A SER 40 41 1 Y 1 A PRO 33 ? A PRO 41 42 1 Y 1 A ASN 34 ? A ASN 42 43 1 Y 1 A ASP 35 ? A ASP 43 44 1 Y 1 A VAL 171 ? A VAL 179 45 1 Y 1 A ILE 172 ? A ILE 180 46 1 Y 1 A LYS 173 ? A LYS 181 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4JF8 _pdbx_initial_refinement_model.details ? #