data_4KZ2 # _entry.id 4KZ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KZ2 pdb_00004kz2 10.2210/pdb4kz2/pdb NDB NA2557 ? ? RCSB RCSB079974 ? ? WWPDB D_1000079974 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-16 2 'Structure model' 2 0 2022-06-08 3 'Structure model' 2 1 2024-02-28 4 'Structure model' 2 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site 8 3 'Structure model' chem_comp_atom 9 3 'Structure model' chem_comp_bond 10 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.value' 20 2 'Structure model' '_struct_conn.pdbx_dist_value' 21 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KZ2 _pdbx_database_status.recvd_initial_deposition_date 2013-05-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, H.' 1 'Endrizzi, J.A.' 2 'Shu, Y.' 3 'Haque, F.' 4 'Sauter, C.' 5 'Guo, P.' 6 'Chi, Y.-I.' 7 # _citation.id primary _citation.title 'Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA.' _citation.journal_abbrev Rna _citation.journal_volume 19 _citation.page_first 1226 _citation.page_last 1237 _citation.year 2013 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23884902 _citation.pdbx_database_id_DOI 10.1261/rna.037077.112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, H.' 1 ? primary 'Endrizzi, J.A.' 2 ? primary 'Shu, Y.' 3 ? primary 'Haque, F.' 4 ? primary 'Sauter, C.' 5 ? primary 'Shlyakhtenko, L.S.' 6 ? primary 'Lyubchenko, Y.' 7 ? primary 'Guo, P.' 8 ? primary 'Chi, Y.I.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'phi29 pRNA 3WJ core RNA 18 mer' 5783.419 1 ? ? ? ? 2 polymer syn 'phi29 pRNA 3WJ core RNA 20 mer' 6241.711 1 ? ? ? ? 3 polymer syn 'phi29 pRNA 3WJ core RNA 16 mer' 5145.144 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 3 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UUGCCAUGUGUAUGUGGG UUGCCAUGUGUAUGUGGG A ? 2 polyribonucleotide no no CCCACAUACUUUGUUGAUCC CCCACAUACUUUGUUGAUCC B ? 3 polyribonucleotide no no GGAUCAAUCAUGGCAA GGAUCAAUCAUGGCAA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 C n 1 6 A n 1 7 U n 1 8 G n 1 9 U n 1 10 G n 1 11 U n 1 12 A n 1 13 U n 1 14 G n 1 15 U n 1 16 G n 1 17 G n 1 18 G n 2 1 C n 2 2 C n 2 3 C n 2 4 A n 2 5 C n 2 6 A n 2 7 U n 2 8 A n 2 9 C n 2 10 U n 2 11 U n 2 12 U n 2 13 G n 2 14 U n 2 15 U n 2 16 G n 2 17 A n 2 18 U n 2 19 C n 2 20 C n 3 1 G n 3 2 G n 3 3 A n 3 4 U n 3 5 C n 3 6 A n 3 7 A n 3 8 U n 3 9 C n 3 10 A n 3 11 U n 3 12 G n 3 13 G n 3 14 C n 3 15 A n 3 16 A n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Chemically synthesized' 2 1 sample ? ? ? ? ? 'Chemically synthesized' 3 1 sample ? ? ? ? ? 'Chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n B 2 1 C 1 1 1 C C B . n B 2 2 C 2 2 2 C C B . n B 2 3 C 3 3 3 C C B . n B 2 4 A 4 4 4 A A B . n B 2 5 C 5 5 5 C C B . n B 2 6 A 6 6 6 A A B . n B 2 7 U 7 7 7 U U B . n B 2 8 A 8 8 8 A A B . n B 2 9 C 9 9 9 C C B . n B 2 10 U 10 10 10 U U B . n B 2 11 U 11 11 11 U U B . n B 2 12 U 12 12 12 U U B . n B 2 13 G 13 13 13 G G B . n B 2 14 U 14 14 14 U U B . n B 2 15 U 15 15 15 U U B . n B 2 16 G 16 16 16 G G B . n B 2 17 A 17 17 17 A A B . n B 2 18 U 18 18 18 U U B . n B 2 19 C 19 19 19 C C B . n B 2 20 C 20 20 20 C C B . n C 3 1 G 1 1 1 G G C . n C 3 2 G 2 2 2 G G C . n C 3 3 A 3 3 3 A A C . n C 3 4 U 4 4 4 U U C . n C 3 5 C 5 5 5 C C C . n C 3 6 A 6 6 6 A A C . n C 3 7 A 7 7 7 A A C . n C 3 8 U 8 8 8 U U C . n C 3 9 C 9 9 9 C C C . n C 3 10 A 10 10 10 A A C . n C 3 11 U 11 11 11 U U C . n C 3 12 G 12 12 12 G G C . n C 3 13 G 13 13 13 G G C . n C 3 14 C 14 14 14 C C C . n C 3 15 A 15 15 15 A A C . n C 3 16 A 16 16 16 A A C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 101 2 MN MN A . E 4 MN 1 101 3 MN MN B . F 4 MN 1 101 1 MN MN C . G 5 HOH 1 201 4 HOH HOH A . G 5 HOH 2 202 5 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 2 ? OP2 ? A U 2 OP2 2 1 Y 1 A G 3 ? OP2 ? A G 3 OP2 3 1 Y 1 A C 4 ? OP2 ? A C 4 OP2 4 1 Y 1 A C 5 ? OP2 ? A C 5 OP2 5 1 Y 1 A A 6 ? OP2 ? A A 6 OP2 6 1 Y 1 A U 7 ? OP2 ? A U 7 OP2 7 1 Y 1 A G 8 ? OP2 ? A G 8 OP2 8 1 Y 1 A U 9 ? OP2 ? A U 9 OP2 9 1 Y 1 A G 10 ? OP2 ? A G 10 OP2 10 1 Y 1 A U 11 ? OP2 ? A U 11 OP2 11 1 Y 1 A A 12 ? OP2 ? A A 12 OP2 12 1 Y 1 A U 13 ? OP2 ? A U 13 OP2 13 1 Y 1 A G 14 ? OP2 ? A G 14 OP2 14 1 Y 1 A U 15 ? OP2 ? A U 15 OP2 15 1 Y 1 A G 16 ? OP2 ? A G 16 OP2 16 1 Y 1 A G 17 ? OP2 ? A G 17 OP2 17 1 Y 1 A G 18 ? OP2 ? A G 18 OP2 18 1 Y 1 B C 2 ? OP2 ? B C 2 OP2 19 1 Y 1 B C 3 ? OP2 ? B C 3 OP2 20 1 Y 1 B A 4 ? OP2 ? B A 4 OP2 21 1 Y 1 B C 5 ? OP2 ? B C 5 OP2 22 1 Y 1 B A 6 ? OP2 ? B A 6 OP2 23 1 Y 1 B U 7 ? OP2 ? B U 7 OP2 24 1 Y 1 B A 8 ? OP2 ? B A 8 OP2 25 1 Y 1 B C 9 ? OP2 ? B C 9 OP2 26 1 Y 1 B U 10 ? OP2 ? B U 10 OP2 27 1 Y 1 B U 11 ? OP2 ? B U 11 OP2 28 1 Y 1 B U 12 ? OP2 ? B U 12 OP2 29 1 Y 1 B G 13 ? OP2 ? B G 13 OP2 30 1 Y 1 B U 14 ? OP2 ? B U 14 OP2 31 1 Y 1 B U 15 ? OP2 ? B U 15 OP2 32 1 Y 1 B G 16 ? OP2 ? B G 16 OP2 33 1 Y 1 B A 17 ? OP2 ? B A 17 OP2 34 1 Y 1 B U 18 ? OP2 ? B U 18 OP2 35 1 Y 1 B C 19 ? OP2 ? B C 19 OP2 36 1 Y 1 B C 20 ? OP2 ? B C 20 OP2 37 1 Y 1 C G 2 ? OP2 ? C G 2 OP2 38 1 Y 1 C A 3 ? OP2 ? C A 3 OP2 39 1 Y 1 C U 4 ? OP2 ? C U 4 OP2 40 1 Y 1 C C 5 ? OP2 ? C C 5 OP2 41 1 Y 1 C A 6 ? OP2 ? C A 6 OP2 42 1 Y 1 C A 7 ? OP2 ? C A 7 OP2 43 1 Y 1 C U 8 ? OP2 ? C U 8 OP2 44 1 Y 1 C C 9 ? OP2 ? C C 9 OP2 45 1 Y 1 C A 10 ? OP2 ? C A 10 OP2 46 1 Y 1 C U 11 ? OP2 ? C U 11 OP2 47 1 Y 1 C G 12 ? OP2 ? C G 12 OP2 48 1 Y 1 C G 13 ? OP2 ? C G 13 OP2 49 1 Y 1 C C 14 ? OP2 ? C C 14 OP2 50 1 Y 1 C A 15 ? OP2 ? C A 15 OP2 51 1 Y 1 C A 16 ? OP2 ? C A 16 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4KZ2 _cell.length_a 125.012 _cell.length_b 125.012 _cell.length_c 26.989 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KZ2 _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4KZ2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.07 _exptl_crystal.density_percent_sol 59.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '100mM Sodium acetate, 24-26% MPD, 20mM CaCl2, 10mM MnCl2, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-04-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock monochromator high-resolution double-crystal Si (111) sagittal focusing. Rosenbaum-Rock vertical focusing mirror.' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98789 # _reflns.entry_id 4KZ2 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 88.40 _reflns.d_resolution_high 3.05 _reflns.number_obs 4203 _reflns.number_all 4217 _reflns.percent_possible_obs 99.68 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 30.3 _reflns.B_iso_Wilson_estimate 75.2 _reflns.pdbx_redundancy 10.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4KZ2 _refine.ls_number_reflns_obs 4201 _refine.ls_number_reflns_all 4203 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 3.05 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.182 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.197 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 215 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model '7 base-pair A-form helix' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1134 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1139 _refine_hist.d_res_high 3.05 _refine_hist.d_res_low 30.0 # _database_PDB_matrix.entry_id 4KZ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4KZ2 _struct.title 'Crystal Structure of phi29 pRNA 3WJ Core' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KZ2 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'phi29 DNA packaging motor pRNA core element, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4KZ2 4KZ2 1 ? UUGCCAUGUGUAUGUGGG ? 2 PDB 4KZ2 4KZ2 2 ? CCCACAUACUUUGUUGAUCC ? 3 PDB 4KZ2 4KZ2 3 ? GGAUCAAUCAUGGCAA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KZ2 A 1 ? 18 ? 4KZ2 1 ? 18 ? 1 18 2 2 4KZ2 B 1 ? 20 ? 4KZ2 1 ? 20 ? 1 20 3 3 4KZ2 C 1 ? 16 ? 4KZ2 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3400 ? 1 MORE -28 ? 1 'SSA (A^2)' 9540 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 3 OP1 ? ? ? 1_555 D MN . MN ? ? A G 3 A MN 101 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc2 metalc ? ? A C 4 OP1 ? ? ? 1_555 F MN . MN ? ? A C 4 C MN 101 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc3 metalc ? ? D MN . MN ? ? ? 1_555 C A 7 OP1 ? ? A MN 101 C A 7 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc4 metalc ? ? B C 20 "O3'" ? ? ? 1_555 E MN . MN ? ? B C 20 B MN 101 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc5 metalc ? ? B C 20 "O2'" ? ? ? 1_555 E MN . MN ? ? B C 20 B MN 101 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc6 metalc ? ? C A 6 OP1 ? ? ? 1_555 F MN . MN ? ? C A 6 C MN 101 1_555 ? ? ? ? ? ? ? 2.165 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 C A 16 N1 ? ? A U 1 C A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 C A 16 N6 ? ? A U 1 C A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 C A 15 N1 ? ? A U 2 C A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 C A 15 N6 ? ? A U 2 C A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 C C 14 N3 ? ? A G 3 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 C C 14 O2 ? ? A G 3 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 C C 14 N4 ? ? A G 3 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 C G 13 N2 ? ? A C 4 C G 13 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog9 hydrog ? ? A C 5 O2 ? ? ? 1_555 C G 12 N2 ? ? A C 5 C G 12 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog10 hydrog ? ? A A 6 N1 ? ? ? 1_555 C U 11 N3 ? ? A A 6 C U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 6 N6 ? ? ? 1_555 C U 11 O4 ? ? A A 6 C U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 C A 10 N1 ? ? A U 7 C A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 C A 10 N6 ? ? A U 7 C A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 C C 9 N3 ? ? A G 8 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 C C 9 O2 ? ? A G 8 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 C C 9 N4 ? ? A G 8 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 B U 10 O2 ? ? A U 9 B U 10 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 B U 10 N3 ? ? A U 9 B U 10 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 10 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 10 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 10 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 11 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 11 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 12 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 12 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 12 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 6 N1 ? ? A U 13 B A 6 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog27 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 14 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 14 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 14 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 15 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 15 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 16 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 16 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 16 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 17 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 17 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 17 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 18 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 13 N1 ? ? ? 1_555 C U 8 O2 ? ? B G 13 C U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? B G 13 O6 ? ? ? 1_555 C U 8 N3 ? ? B G 13 C U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog43 hydrog ? ? B U 14 N3 ? ? ? 1_555 C A 7 N1 ? ? B U 14 C A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B U 14 O4 ? ? ? 1_555 C A 7 N6 ? ? B U 14 C A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B U 15 N3 ? ? ? 1_555 C A 6 N1 ? ? B U 15 C A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B U 15 O4 ? ? ? 1_555 C A 6 N6 ? ? B U 15 C A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 16 N1 ? ? ? 1_555 C C 5 N3 ? ? B G 16 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 16 N2 ? ? ? 1_555 C C 5 O2 ? ? B G 16 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 16 O6 ? ? ? 1_555 C C 5 N4 ? ? B G 16 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B A 17 N1 ? ? ? 1_555 C U 4 N3 ? ? B A 17 C U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 17 N6 ? ? ? 1_555 C U 4 O4 ? ? B A 17 C U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B U 18 N3 ? ? ? 1_555 C A 3 N1 ? ? B U 18 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 18 O4 ? ? ? 1_555 C A 3 N6 ? ? B U 18 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 19 N3 ? ? ? 1_555 C G 2 N1 ? ? B C 19 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 19 N4 ? ? ? 1_555 C G 2 O6 ? ? B C 19 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 19 O2 ? ? ? 1_555 C G 2 N2 ? ? B C 19 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 20 N3 ? ? ? 1_555 C G 1 N1 ? ? B C 20 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 20 N4 ? ? ? 1_555 C G 1 O6 ? ? B C 20 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 20 O2 ? ? ? 1_555 C G 1 N2 ? ? B C 20 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 3 ? A G 3 ? 1_555 MN ? D MN . ? A MN 101 ? 1_555 OP1 ? C A 7 ? C A 7 ? 1_555 164.9 ? 2 OP1 ? A C 4 ? A C 4 ? 1_555 MN ? F MN . ? C MN 101 ? 1_555 OP1 ? C A 6 ? C A 6 ? 1_555 159.0 ? 3 "O3'" ? B C 20 ? B C 20 ? 1_555 MN ? E MN . ? B MN 101 ? 1_555 "O2'" ? B C 20 ? B C 20 ? 1_555 71.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 101 ? 3 'BINDING SITE FOR RESIDUE MN A 101' AC2 Software B MN 101 ? 1 'BINDING SITE FOR RESIDUE MN B 101' AC3 Software C MN 101 ? 4 'BINDING SITE FOR RESIDUE MN C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 3 ? G A 3 . ? 1_555 ? 2 AC1 3 C B 19 ? C B 19 . ? 6_554 ? 3 AC1 3 A C 7 ? A C 7 . ? 1_555 ? 4 AC2 1 C B 20 ? C B 20 . ? 1_555 ? 5 AC3 4 C A 4 ? C A 4 . ? 1_555 ? 6 AC3 4 G A 18 ? G A 18 . ? 3_655 ? 7 AC3 4 C B 20 ? C B 20 . ? 6_554 ? 8 AC3 4 A C 6 ? A C 6 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MN MN MN N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4KZ2 'double helix' 4KZ2 'a-form double helix' 4KZ2 'mismatched base pair' 4KZ2 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 C A 16 1_555 0.334 -0.116 -0.132 -6.428 -12.825 -1.786 1 A_U1:A16_C A 1 ? C 16 ? 20 1 1 A U 2 1_555 C A 15 1_555 0.079 -0.112 0.272 7.279 -5.535 5.587 2 A_U2:A15_C A 2 ? C 15 ? 20 1 1 A G 3 1_555 C C 14 1_555 -0.310 -0.140 -0.279 3.706 -3.703 2.224 3 A_G3:C14_C A 3 ? C 14 ? 19 1 1 A C 4 1_555 C G 13 1_555 -0.407 0.283 -0.124 7.813 -5.692 10.792 4 A_C4:G13_C A 4 ? C 13 ? ? 1 1 A C 5 1_555 C G 12 1_555 -0.443 0.294 -0.255 7.795 -6.704 10.957 5 A_C5:G12_C A 5 ? C 12 ? ? 1 1 A A 6 1_555 C U 11 1_555 -0.191 -0.048 -0.219 -4.873 -9.609 6.278 6 A_A6:U11_C A 6 ? C 11 ? 20 1 1 A U 7 1_555 C A 10 1_555 -0.052 0.098 0.334 -15.694 -13.972 9.457 7 A_U7:A10_C A 7 ? C 10 ? 20 1 1 A G 8 1_555 C C 9 1_555 0.185 0.176 0.157 -3.066 -5.689 8.151 8 A_G8:C9_C A 8 ? C 9 ? 19 1 1 B G 13 1_555 C U 8 1_555 -2.662 -0.721 0.035 0.438 -10.285 -0.503 9 B_G13:U8_C B 13 ? C 8 ? 28 1 1 B U 14 1_555 C A 7 1_555 0.278 -0.105 0.057 1.107 -11.495 7.262 10 B_U14:A7_C B 14 ? C 7 ? 20 1 1 B U 15 1_555 C A 6 1_555 -0.117 -0.058 0.130 -3.752 -4.320 5.021 11 B_U15:A6_C B 15 ? C 6 ? 20 1 1 B G 16 1_555 C C 5 1_555 0.064 -0.072 -0.299 -8.793 -9.703 2.816 12 B_G16:C5_C B 16 ? C 5 ? 19 1 1 B A 17 1_555 C U 4 1_555 0.128 -0.039 -0.102 -3.231 -12.109 -0.078 13 B_A17:U4_C B 17 ? C 4 ? 20 1 1 B U 18 1_555 C A 3 1_555 -0.280 -0.109 0.002 4.892 -15.524 1.032 14 B_U18:A3_C B 18 ? C 3 ? 20 1 1 B C 19 1_555 C G 2 1_555 0.359 -0.207 0.160 0.191 -12.540 -0.980 15 B_C19:G2_C B 19 ? C 2 ? 19 1 1 B C 20 1_555 C G 1 1_555 0.152 -0.064 0.233 2.102 -12.472 4.181 16 B_C20:G1_C B 20 ? C 1 ? 19 1 1 A U 9 1_555 B U 10 1_555 -2.708 -1.782 0.103 -10.227 -9.872 14.101 17 A_U9:U10_B A 9 ? B 10 ? 16 1 1 A G 10 1_555 B C 9 1_555 -0.602 -0.136 -0.230 -11.398 -11.451 2.616 18 A_G10:C9_B A 10 ? B 9 ? 19 1 1 A U 11 1_555 B A 8 1_555 0.104 -0.036 0.280 -5.228 -2.310 2.663 19 A_U11:A8_B A 11 ? B 8 ? 20 1 1 A A 12 1_555 B U 7 1_555 0.062 -0.024 0.178 -0.140 -10.788 -2.650 20 A_A12:U7_B A 12 ? B 7 ? 20 1 1 A U 13 1_555 B A 6 1_555 0.970 0.200 0.241 4.909 -23.240 9.144 21 A_U13:A6_B A 13 ? B 6 ? ? ? 1 A G 14 1_555 B C 5 1_555 0.587 -0.089 0.075 -9.027 -5.941 3.906 22 A_G14:C5_B A 14 ? B 5 ? 19 1 1 A U 15 1_555 B A 4 1_555 -0.101 -0.105 0.173 -4.450 -4.629 1.465 23 A_U15:A4_B A 15 ? B 4 ? 20 1 1 A G 16 1_555 B C 3 1_555 0.144 -0.151 -0.070 -3.440 -7.492 2.279 24 A_G16:C3_B A 16 ? B 3 ? 19 1 1 A G 17 1_555 B C 2 1_555 0.017 -0.137 -0.148 -11.354 -11.251 2.432 25 A_G17:C2_B A 17 ? B 2 ? 19 1 1 A G 18 1_555 B C 1 1_555 0.583 -0.099 -0.229 -21.191 -13.579 -0.729 26 A_G18:C1_B A 18 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 C A 16 1_555 A U 2 1_555 C A 15 1_555 0.537 -1.085 2.977 -4.486 10.784 29.238 -3.706 -1.700 2.334 20.368 8.473 31.437 1 AA_U1U2:A15A16_CC A 1 ? C 16 ? A 2 ? C 15 ? 1 A U 2 1_555 C A 15 1_555 A G 3 1_555 C C 14 1_555 -0.266 -1.685 3.121 1.563 10.388 29.045 -4.920 0.763 2.374 19.909 -2.996 30.848 2 AA_U2G3:C14A15_CC A 2 ? C 15 ? A 3 ? C 14 ? 1 A G 3 1_555 C C 14 1_555 A C 4 1_555 C G 13 1_555 0.577 -1.694 3.127 -2.379 5.147 30.555 -4.059 -1.491 2.760 9.661 4.465 31.065 3 AA_G3C4:G13C14_CC A 3 ? C 14 ? A 4 ? C 13 ? 1 A C 4 1_555 C G 13 1_555 A C 5 1_555 C G 12 1_555 -0.217 -1.861 3.076 0.686 6.670 29.134 -4.825 0.545 2.590 13.043 -1.341 29.880 4 AA_C4C5:G12G13_CC A 4 ? C 13 ? A 5 ? C 12 ? 1 A C 5 1_555 C G 12 1_555 A A 6 1_555 C U 11 1_555 -0.133 -1.343 3.463 -0.449 12.942 30.879 -4.438 0.158 2.700 23.075 0.801 33.423 5 AA_C5A6:U11G12_CC A 5 ? C 12 ? A 6 ? C 11 ? 1 A A 6 1_555 C U 11 1_555 A U 7 1_555 C A 10 1_555 0.354 -1.150 3.510 -2.780 15.165 31.763 -4.148 -0.996 2.665 25.888 4.745 35.220 6 AA_A6U7:A10U11_CC A 6 ? C 11 ? A 7 ? C 10 ? 1 A U 7 1_555 C A 10 1_555 A G 8 1_555 C C 9 1_555 0.005 -1.579 2.667 -1.433 16.450 29.627 -4.567 -0.170 1.593 29.465 2.566 33.828 7 AA_U7G8:C9A10_CC A 7 ? C 10 ? A 8 ? C 9 ? 1 A G 8 1_555 C C 9 1_555 B G 13 1_555 C U 8 1_555 -0.015 -2.624 2.938 0.803 7.498 20.500 -9.152 0.278 1.869 20.206 -2.163 21.829 8 AB_G8G13:U8C9_CC A 8 ? C 9 ? B 13 ? C 8 ? 1 B G 13 1_555 C U 8 1_555 B U 14 1_555 C A 7 1_555 0.276 -1.255 3.174 -1.286 4.213 45.278 -1.977 -0.465 3.043 5.457 1.666 45.480 9 BB_G13U14:A7U8_CC B 13 ? C 8 ? B 14 ? C 7 ? 1 B U 14 1_555 C A 7 1_555 B U 15 1_555 C A 6 1_555 0.234 -2.095 3.170 2.073 8.563 30.680 -5.195 -0.092 2.519 15.780 -3.819 31.891 10 BB_U14U15:A6A7_CC B 14 ? C 7 ? B 15 ? C 6 ? 1 B U 15 1_555 C A 6 1_555 B G 16 1_555 C C 5 1_555 -0.341 -1.747 3.450 4.177 3.277 30.485 -3.923 1.463 3.175 6.174 -7.869 30.933 11 BB_U15G16:C5A6_CC B 15 ? C 6 ? B 16 ? C 5 ? 1 B G 16 1_555 C C 5 1_555 B A 17 1_555 C U 4 1_555 -0.239 -1.725 3.162 -0.948 3.772 27.743 -4.397 0.285 2.913 7.818 1.965 28.009 12 BB_G16A17:U4C5_CC B 16 ? C 5 ? B 17 ? C 4 ? 1 B A 17 1_555 C U 4 1_555 B U 18 1_555 C A 3 1_555 0.134 -1.729 3.062 -0.472 0.238 29.050 -3.495 -0.365 3.046 0.475 0.941 29.054 13 BB_A17U18:A3U4_CC B 17 ? C 4 ? B 18 ? C 3 ? 1 B U 18 1_555 C A 3 1_555 B C 19 1_555 C G 2 1_555 -0.219 -1.591 3.331 -1.653 3.779 34.443 -3.246 0.115 3.151 6.353 2.780 34.682 14 BB_U18C19:G2A3_CC B 18 ? C 3 ? B 19 ? C 2 ? 1 B C 19 1_555 C G 2 1_555 B C 20 1_555 C G 1 1_555 0.740 -1.836 3.128 5.087 10.293 31.579 -4.684 -0.540 2.509 18.179 -8.984 33.551 15 BB_C19C20:G1G2_CC B 19 ? C 2 ? B 20 ? C 1 ? 1 A U 9 1_555 B U 10 1_555 A G 10 1_555 B C 9 1_555 -0.561 -0.840 3.319 2.352 7.962 40.895 -2.009 1.032 3.074 11.255 -3.325 41.694 16 AA_U9G10:C9U10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A G 10 1_555 B C 9 1_555 A U 11 1_555 B A 8 1_555 -0.039 -1.200 3.089 -2.693 8.564 31.802 -3.417 -0.343 2.678 15.252 4.797 33.014 17 AA_G10U11:A8C9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A U 11 1_555 B A 8 1_555 A A 12 1_555 B U 7 1_555 0.229 -1.331 2.985 2.551 8.634 29.970 -3.877 -0.009 2.523 16.241 -4.799 31.263 18 AA_U11A12:U7A8_BB A 11 ? B 8 ? A 12 ? B 7 ? 1 A A 12 1_555 B U 7 1_555 A U 13 1_555 B A 6 1_555 0.941 -1.224 3.084 1.891 12.610 38.818 -3.002 -1.164 2.619 18.379 -2.757 40.781 19 AA_A12U13:A6U7_BB A 12 ? B 7 ? A 13 ? B 6 ? 1 A U 13 1_555 B A 6 1_555 A G 14 1_555 B C 5 1_555 -0.462 -1.485 3.325 -0.436 9.080 30.644 -4.273 0.765 2.788 16.724 0.803 31.932 20 AA_U13G14:C5A6_BB A 13 ? B 6 ? A 14 ? B 5 ? 1 A G 14 1_555 B C 5 1_555 A U 15 1_555 B A 4 1_555 -0.223 -1.612 3.133 -0.896 3.875 27.957 -4.139 0.264 2.893 7.970 1.844 28.233 21 AA_G14U15:A4C5_BB A 14 ? B 5 ? A 15 ? B 4 ? 1 A U 15 1_555 B A 4 1_555 A G 16 1_555 B C 3 1_555 0.185 -1.162 3.169 1.711 7.974 31.662 -3.348 -0.053 2.807 14.319 -3.072 32.669 22 AA_U15G16:C3A4_BB A 15 ? B 4 ? A 16 ? B 3 ? 1 A G 16 1_555 B C 3 1_555 A G 17 1_555 B C 2 1_555 0.512 -2.142 3.365 1.600 7.133 29.693 -5.418 -0.668 2.809 13.659 -3.065 30.560 23 AA_G16G17:C2C3_BB A 16 ? B 3 ? A 17 ? B 2 ? 1 A G 17 1_555 B C 2 1_555 A G 18 1_555 B C 1 1_555 0.297 -1.908 3.527 5.735 3.587 35.427 -3.621 0.381 3.331 5.829 -9.320 36.046 24 AA_G17G18:C1C2_BB A 17 ? B 2 ? A 18 ? B 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details '7 base pair A-form double helix' # _atom_sites.entry_id 4KZ2 _atom_sites.fract_transf_matrix[1][1] 0.007999 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007999 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037052 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P # loop_