HEADER HYDROLASE 31-MAY-13 4L0M TITLE CRYSTAL STRUCTURE OF A PUTATIVE 5'-METHYLTHIOADENOSINE/S- TITLE 2 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE FROM BORRELIA BURGDORFERI B31 BOUND TITLE 3 TO ADENINE (TARGET NYSGRC-029268 ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE COMPND 3 NUCLEOSIDASE; COMPND 4 CHAIN: A; COMPND 5 EC: 3.2.2.16, 3.2.2.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 STRAIN: B31; SOURCE 5 GENE: BB_0375, BB_0375 PFS GENE PRODUCT, PFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS BORRELIA BURGDORFERI B31, 5'-METHYLTHIOADENOSINE NUCLEOSIDASE, KEYWDS 2 ADENINE, BB_0375, PFS GENE PRODUCT, STRUCTURAL GENOMICS, NYSGRC, NEW KEYWDS 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 2 CONSORTIUM (NYSGRC) REVDAT 4 09-OCT-24 4L0M 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4L0M 1 REMARK REVDAT 2 27-NOV-13 4L0M 1 KEYWDS REVDAT 1 14-AUG-13 4L0M 0 JRNL AUTH P.SAMPATHKUMAR,M.AHMED,J.ATTONITO,R.BHOSLE,J.BONANNO, JRNL AUTH 2 S.CHAMALA,S.CHOWDHURY,G.EROMENOK,A.FISER,A.S.GLENN, JRNL AUTH 3 J.HAMMONDS,D.M.HIMMEL,B.HILLERICH,K.KHAFIZOV,J.LAFLEUR, JRNL AUTH 4 J.D.LOVE,M.STEAD,R.SEIDEL,R.TORO,L.L.MORISCO,S.S.SOJITRA, JRNL AUTH 5 S.R.WASSERMAN,A.HAAPALAINEN,J.SUAREZ,V.L.SCHRAMM,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE JRNL TITL 3 FROM BORRELIA BURGDORFERI B31 BOUND TO ADENINE (TARGET JRNL TITL 4 NYSGRC-029268 ) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : -3.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1968 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2011 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2664 ; 1.522 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4661 ; 0.819 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 6.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;34.177 ;27.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;15.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;27.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2197 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4L0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 26.80 REMARK 200 R MERGE FOR SHELL (I) : 2.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20MM HEPES PH7.5, 150MM NACL, REMARK 280 5% GLYCEROL, AND 5MM DTT); RESERVOIR (MCSG2 #27: 0.2 M AMMONIUM REMARK 280 ACETATE, 0.1 M HEPES:NAOH PH 7.5, 25% (W/V) PEG 3350 ); REMARK 280 CRYOPROTECTION (33% ETHYLENE GLYCOL), SITTING DROP, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.91900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.04150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.04150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.37850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.04150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.04150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.45950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.04150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.04150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 181.37850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.04150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.04150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.45950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.91900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 241.83800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 15.38 -154.50 REMARK 500 SER A 87 24.23 -146.12 REMARK 500 LEU A 92 -11.02 87.61 REMARK 500 LEU A 107 40.68 -106.54 REMARK 500 ASP A 156 39.86 -87.08 REMARK 500 ASP A 210 56.24 -100.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029268 RELATED DB: TARGETTRACK DBREF 4L0M A 2 237 UNP O50162 O50162_BORBU 2 237 SEQADV 4L0M MSE A -21 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -20 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -19 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -18 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -17 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -16 UNP O50162 EXPRESSION TAG SEQADV 4L0M HIS A -15 UNP O50162 EXPRESSION TAG SEQADV 4L0M SER A -14 UNP O50162 EXPRESSION TAG SEQADV 4L0M SER A -13 UNP O50162 EXPRESSION TAG SEQADV 4L0M GLY A -12 UNP O50162 EXPRESSION TAG SEQADV 4L0M VAL A -11 UNP O50162 EXPRESSION TAG SEQADV 4L0M ASP A -10 UNP O50162 EXPRESSION TAG SEQADV 4L0M LEU A -9 UNP O50162 EXPRESSION TAG SEQADV 4L0M GLY A -8 UNP O50162 EXPRESSION TAG SEQADV 4L0M THR A -7 UNP O50162 EXPRESSION TAG SEQADV 4L0M GLU A -6 UNP O50162 EXPRESSION TAG SEQADV 4L0M ASN A -5 UNP O50162 EXPRESSION TAG SEQADV 4L0M LEU A -4 UNP O50162 EXPRESSION TAG SEQADV 4L0M TYR A -3 UNP O50162 EXPRESSION TAG SEQADV 4L0M PHE A -2 UNP O50162 EXPRESSION TAG SEQADV 4L0M GLN A -1 UNP O50162 EXPRESSION TAG SEQADV 4L0M SER A 0 UNP O50162 EXPRESSION TAG SEQADV 4L0M MSE A 1 UNP O50162 EXPRESSION TAG SEQRES 1 A 259 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 259 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ILE LEU ILE SEQRES 3 A 259 ILE SER ALA MSE GLN GLU GLU SER GLU GLU ILE ASN LYS SEQRES 4 A 259 ILE LEU ASP ASN LYS GLU GLU ILE VAL LEU ASN ASP TYR SEQRES 5 A 259 LEU GLU ASN LYS LYS ILE TYR LYS GLY LYS ILE LEU GLY SEQRES 6 A 259 LYS ASP VAL ILE SER LEU THR THR GLY ILE GLY LYS VAL SEQRES 7 A 259 ASN ALA ALA THR TRP SER SER GLN ILE ILE SER LYS TYR SEQRES 8 A 259 LYS ILE THR HIS ILE ILE ASN SER GLY SER SER GLY GLY SEQRES 9 A 259 ILE LYS GLU ASN SER ASN LEU LYS ILE LEU ASP ILE ILE SEQRES 10 A 259 VAL SER SER GLU THR ALA TYR TYR ASP PHE ASP LEU THR SEQRES 11 A 259 LYS PHE GLY HIS LYS ILE GLY GLN VAL PRO ASN LEU PRO SEQRES 12 A 259 GLN LYS PHE LYS ALA ASP GLU GLU LEU LEU LYS LYS VAL SEQRES 13 A 259 ALA ASN ILE VAL ASP ASN LYS LEU LEU ASN ILE ASP ILE SEQRES 14 A 259 HIS ILE GLY LEU ILE LEU THR GLY ASP GLN PHE VAL ASP SEQRES 15 A 259 ASN GLU LYS ASN LEU GLU THR ILE LYS LYS ASN PHE LYS SEQRES 16 A 259 ASP ALA LEU ALA VAL ASP MSE GLU GLY ALA ALA ILE ALA SEQRES 17 A 259 GLN VAL ALA HIS ILE PHE LYS ILE PRO PHE ILE ILE ILE SEQRES 18 A 259 ARG SER ILE SER ASP LEU PRO ASN ASN LYS ASP ASN HIS SEQRES 19 A 259 ILE ASP PHE ASN LYS PHE LEU LYS THR SER SER ILE ASN SEQRES 20 A 259 SER SER LYS MSE THR LYS GLU LEU ILE ARG LEU ILE MODRES 4L0M MSE A 1 MET SELENOMETHIONINE MODRES 4L0M MSE A 8 MET SELENOMETHIONINE MODRES 4L0M MSE A 180 MET SELENOMETHIONINE MODRES 4L0M MSE A 229 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 180 8 HET MSE A 229 8 HET ADE A 301 10 HETNAM MSE SELENOMETHIONINE HETNAM ADE ADENINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ADE C5 H5 N5 FORMUL 3 HOH *114(H2 O) HELIX 1 1 MSE A 8 LYS A 17 1 10 HELIX 2 2 GLY A 54 TYR A 69 1 16 HELIX 3 3 LEU A 107 GLY A 111 5 5 HELIX 4 4 ASP A 127 ASN A 140 1 14 HELIX 5 5 LYS A 163 PHE A 172 1 10 HELIX 6 6 GLU A 181 PHE A 192 1 12 HELIX 7 7 ASP A 210 ILE A 237 1 28 SHEET 1 A 9 ASP A 20 LEU A 27 0 SHEET 2 A 9 LYS A 34 ILE A 41 -1 O LYS A 34 N LEU A 27 SHEET 3 A 9 LYS A 44 THR A 50 -1 O SER A 48 N TYR A 37 SHEET 4 A 9 ILE A 2 SER A 6 1 N ILE A 4 O ILE A 47 SHEET 5 A 9 HIS A 73 GLY A 82 1 O ILE A 75 N LEU A 3 SHEET 6 A 9 ALA A 177 ASP A 179 -1 O VAL A 178 N GLY A 81 SHEET 7 A 9 ILE A 147 THR A 154 1 N LEU A 153 O ALA A 177 SHEET 8 A 9 ILE A 94 TYR A 102 1 N ILE A 94 O HIS A 148 SHEET 9 A 9 PHE A 124 LYS A 125 -1 O PHE A 124 N THR A 100 SHEET 1 B 8 ASP A 20 LEU A 27 0 SHEET 2 B 8 LYS A 34 ILE A 41 -1 O LYS A 34 N LEU A 27 SHEET 3 B 8 LYS A 44 THR A 50 -1 O SER A 48 N TYR A 37 SHEET 4 B 8 ILE A 2 SER A 6 1 N ILE A 4 O ILE A 47 SHEET 5 B 8 HIS A 73 GLY A 82 1 O ILE A 75 N LEU A 3 SHEET 6 B 8 PHE A 196 ASP A 204 1 O ILE A 199 N ASN A 76 SHEET 7 B 8 ILE A 94 TYR A 102 -1 N ILE A 95 O ARG A 200 SHEET 8 B 8 PHE A 124 LYS A 125 -1 O PHE A 124 N THR A 100 LINK C MSE A 1 N ILE A 2 1555 1555 1.32 LINK C ALA A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N GLN A 9 1555 1555 1.33 LINK C ASP A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N GLU A 181 1555 1555 1.33 LINK C LYS A 228 N MSE A 229 1555 1555 1.34 LINK C MSE A 229 N THR A 230 1555 1555 1.34 SITE 1 AC1 11 SER A 79 SER A 80 GLY A 81 GLN A 157 SITE 2 AC1 11 PHE A 158 VAL A 159 SER A 203 ASP A 204 SITE 3 AC1 11 ASN A 211 PHE A 215 HOH A 511 CRYST1 48.083 48.083 241.838 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020797 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004135 0.00000 HETATM 1 N MSE A 1 18.295 23.850 104.541 1.00 49.20 N HETATM 2 CA MSE A 1 19.061 22.656 105.067 1.00 48.90 C HETATM 3 C MSE A 1 18.046 21.572 105.316 1.00 38.14 C HETATM 4 O MSE A 1 17.186 21.690 106.183 1.00 41.00 O HETATM 5 CB MSE A 1 19.892 23.000 106.303 1.00 48.87 C HETATM 6 CG MSE A 1 20.626 21.806 106.925 1.00 55.22 C HETATM 7 SE MSE A 1 22.477 21.502 106.297 1.00 71.35 SE HETATM 8 CE MSE A 1 23.227 23.310 106.582 1.00 73.01 C