HEADER OXIDOREDUCTASE 03-JUN-13 4L1X TITLE CRYSTAL STRUCTUER OF HUMAN 3-ALPHA HYDROXYSTEROID DEHYDROGENASE TYPE 3 TITLE 2 V54L MUTANT IN COMPLEX WITH NADP+ AND PROGESTERONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-ALPHA-HSD3, CHLORDECONE REDUCTASE HOMOLOG HAKRD, COMPND 5 DIHYDRODIOL DEHYDROGENASE 2, DD-2, DD2, DIHYDRODIOL COMPND 6 DEHYDROGENASE/BILE ACID-BINDING PROTEIN, DD/BABP, TRANS-1,2- COMPND 7 DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE, TYPE III 3-ALPHA- COMPND 8 HYDROXYSTEROID DEHYDROGENASE; COMPND 9 EC: 1.3.1.20, 1.1.1.213; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA BARREL, HUMAN 3-ALPHA HSD3, AKR, AKR1C2, OXIDOREDUCTASE, KEYWDS 2 ALDO-KETO REDUCTASE, NADPH EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,X.-J.HU,S.-X.LIN REVDAT 2 08-NOV-23 4L1X 1 REMARK SEQADV REVDAT 1 16-APR-14 4L1X 0 JRNL AUTH B.ZHANG,D.-W.ZHU,X.-J.HU,M.ZHOU,P.SHANG,S.-X.LIN JRNL TITL HUMAN 3-ALPHA HYDROXYSTEROID DEHYDROGENASE TYPE 3 (3 JRNL TITL 2 ALPHA-HSD3): THE V54L MUTATION RESTRICTING THE STEROID JRNL TITL 3 ALTERNATIVE BINDING AND ENHANCING THE 20 ALPHA-HSD ACTIVITY JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 141 135 2014 JRNL REFN ISSN 0960-0760 JRNL PMID 24434280 JRNL DOI 10.1016/J.JSBMB.2014.01.003 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2263 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1360 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5499 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5253 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7487 ; 1.941 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12130 ; 1.286 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 6.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;37.043 ;24.422 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 942 ;12.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;10.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 823 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6085 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1235 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 323 B -1 323 21104 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.05300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1J96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, 0.8MM PROGESTERONE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.55000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 632 O HOH B 670 1.87 REMARK 500 O ALA A 27 O HOH A 700 2.05 REMARK 500 O HOH A 789 O HOH B 599 2.06 REMARK 500 O HOH B 646 O HOH B 669 2.08 REMARK 500 O HOH B 646 O HOH B 655 2.16 REMARK 500 O SER A 32 O HOH A 798 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 301 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 71 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 143 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 301 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 1 85.87 -159.42 REMARK 500 PHE A 197 73.29 -152.72 REMARK 500 SER A 221 164.16 86.01 REMARK 500 ARG A 250 -141.52 -120.77 REMARK 500 ARG A 301 26.97 -152.98 REMARK 500 ASP B 1 89.43 -159.50 REMARK 500 ALA B 52 149.51 -173.12 REMARK 500 PHE B 197 78.24 -156.82 REMARK 500 SER B 221 163.88 83.83 REMARK 500 ARG B 250 -152.34 -125.54 REMARK 500 ARG B 301 25.75 -154.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STR B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L1W RELATED DB: PDB REMARK 900 THE WILD TYPE PROTEIN WITHOUT V54L MUTATION DBREF 4L1X A 2 323 UNP P52895 AK1C2_HUMAN 2 323 DBREF 4L1X B 2 323 UNP P52895 AK1C2_HUMAN 2 323 SEQADV 4L1X SER A -1 UNP P52895 EXPRESSION TAG SEQADV 4L1X VAL A 0 UNP P52895 EXPRESSION TAG SEQADV 4L1X ASP A 1 UNP P52895 EXPRESSION TAG SEQADV 4L1X LEU A 54 UNP P52895 VAL 54 ENGINEERED MUTATION SEQADV 4L1X SER B -1 UNP P52895 EXPRESSION TAG SEQADV 4L1X VAL B 0 UNP P52895 EXPRESSION TAG SEQADV 4L1X ASP B 1 UNP P52895 EXPRESSION TAG SEQADV 4L1X LEU B 54 UNP P52895 VAL 54 ENGINEERED MUTATION SEQRES 1 A 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 A 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 A 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 A 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 A 325 SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 A 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 A 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 A 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 A 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 A 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 A 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 A 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 A 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 A 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 A 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 A 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 A 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 A 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 A 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 A 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 A 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 A 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 A 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 A 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 A 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR SEQRES 1 B 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 B 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 B 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 B 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 B 325 SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 B 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 B 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 B 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 B 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 B 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 B 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 B 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 B 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 B 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 B 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 B 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 B 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 B 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 B 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 B 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 B 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 B 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 B 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 B 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 B 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR HET NAP A 401 48 HET STR A 402 23 HET SO4 A 403 5 HET NAP B 401 48 HET STR B 402 23 HET SO4 B 403 5 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM STR PROGESTERONE HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 STR 2(C21 H30 O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *544(H2 O) HELIX 1 1 PRO A 30 SER A 32 5 3 HELIX 2 2 LYS A 33 GLY A 45 1 13 HELIX 3 3 ALA A 52 ASN A 56 5 5 HELIX 4 4 ASN A 57 ASP A 71 1 15 HELIX 5 5 LYS A 75 ILE A 79 5 5 HELIX 6 6 TRP A 86 HIS A 90 5 5 HELIX 7 7 ARG A 91 GLU A 93 5 3 HELIX 8 8 LEU A 94 GLN A 107 1 14 HELIX 9 9 ASP A 143 ALA A 157 1 15 HELIX 10 10 ASN A 169 ASN A 178 1 10 HELIX 11 11 GLN A 199 LYS A 209 1 11 HELIX 12 12 VAL A 234 GLU A 237 5 4 HELIX 13 13 ASP A 238 LYS A 249 1 12 HELIX 14 14 THR A 251 ARG A 263 1 13 HELIX 15 15 ASN A 273 GLN A 282 1 10 HELIX 16 16 VAL A 283 PHE A 286 5 4 HELIX 17 17 THR A 289 GLY A 298 1 10 HELIX 18 18 LEU A 308 ALA A 312 5 5 HELIX 19 19 LYS B 31 GLY B 45 1 15 HELIX 20 20 ALA B 52 ASN B 56 5 5 HELIX 21 21 ASN B 57 ASP B 71 1 15 HELIX 22 22 LYS B 75 ILE B 79 5 5 HELIX 23 23 TRP B 86 HIS B 90 5 5 HELIX 24 24 ARG B 91 GLN B 107 1 17 HELIX 25 25 ASP B 143 ALA B 157 1 15 HELIX 26 26 ASN B 169 ASN B 178 1 10 HELIX 27 27 GLN B 199 LYS B 209 1 11 HELIX 28 28 VAL B 234 GLU B 237 5 4 HELIX 29 29 ASP B 238 LYS B 249 1 12 HELIX 30 30 THR B 251 ARG B 263 1 13 HELIX 31 31 ASN B 273 GLN B 282 1 10 HELIX 32 32 VAL B 283 PHE B 286 5 4 HELIX 33 33 THR B 289 GLY B 298 1 10 HELIX 34 34 LEU B 308 ALA B 312 5 5 SHEET 1 A 2 CYS A 7 LYS A 9 0 SHEET 2 A 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 B 9 LEU A 19 GLY A 22 0 SHEET 2 B 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 B 9 PHE A 80 LEU A 85 1 O THR A 82 N ILE A 49 SHEET 4 B 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 B 9 ALA A 160 SER A 166 1 O GLY A 164 N TYR A 114 SHEET 6 B 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 B 9 VAL A 212 TYR A 216 1 O TYR A 216 N VAL A 191 SHEET 8 B 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 B 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 C 2 CYS B 7 LYS B 9 0 SHEET 2 C 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 D 9 LEU B 19 GLY B 22 0 SHEET 2 D 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 D 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 D 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 D 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 D 9 CYS B 188 GLU B 192 1 O GLN B 190 N VAL B 165 SHEET 7 D 9 VAL B 212 TYR B 216 1 O TYR B 216 N VAL B 191 SHEET 8 D 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 D 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 CISPEP 1 GLU A 225 PRO A 226 0 3.95 CISPEP 2 GLU B 225 PRO B 226 0 2.79 SITE 1 AC1 32 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC1 32 TYR A 55 LYS A 84 HIS A 117 SER A 166 SITE 3 AC1 32 ASN A 167 GLN A 190 TYR A 216 SER A 217 SITE 4 AC1 32 ALA A 218 LEU A 219 GLY A 220 SER A 221 SITE 5 AC1 32 HIS A 222 ALA A 253 LEU A 268 LYS A 270 SITE 6 AC1 32 SER A 271 TYR A 272 ARG A 276 GLN A 279 SITE 7 AC1 32 ASN A 280 STR A 402 HOH A 566 HOH A 571 SITE 8 AC1 32 HOH A 611 HOH A 612 HOH A 622 HOH A 720 SITE 1 AC2 9 TYR A 24 TYR A 55 VAL A 128 HIS A 222 SITE 2 AC2 9 TRP A 227 LEU A 308 NAP A 401 HOH A 612 SITE 3 AC2 9 HOH A 749 SITE 1 AC3 6 PRO A 180 GLY A 181 GLN A 275 ARG A 278 SITE 2 AC3 6 HOH A 536 HOH A 687 SITE 1 AC4 32 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC4 32 TYR B 55 HIS B 117 SER B 166 ASN B 167 SITE 3 AC4 32 GLN B 190 TYR B 216 SER B 217 ALA B 218 SITE 4 AC4 32 LEU B 219 GLY B 220 SER B 221 HIS B 222 SITE 5 AC4 32 ALA B 253 LEU B 268 LYS B 270 SER B 271 SITE 6 AC4 32 TYR B 272 ARG B 276 GLN B 279 ASN B 280 SITE 7 AC4 32 STR B 402 HOH B 569 HOH B 590 HOH B 595 SITE 8 AC4 32 HOH B 699 HOH B 702 HOH B 704 HOH B 710 SITE 1 AC5 10 TYR B 24 TYR B 55 VAL B 128 ILE B 129 SITE 2 AC5 10 HIS B 222 TRP B 227 LEU B 308 NAP B 401 SITE 3 AC5 10 HOH B 569 HOH B 709 SITE 1 AC6 10 GLN A 262 SER A 290 MET A 293 ARG B 200 SITE 2 AC6 10 LYS B 207 ARG B 263 HOH B 570 HOH B 582 SITE 3 AC6 10 HOH B 585 HOH B 637 CRYST1 53.140 87.100 76.870 90.00 106.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018818 0.000000 0.005506 0.00000 SCALE2 0.000000 0.011481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013554 0.00000