HEADER TRANSFERASE 07-JUN-13 4L43
TITLE CRYSTAL STRUCTURES OF HUMAN P70S6K1-T389A (FORM I)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RPS6KB1 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 75-417;
COMPND 5 SYNONYM: RIBOSOMAL PROTEIN S6 KINASE BETA-1, RIBOSOMAL PROTEIN S6
COMPND 6 KINASE, 70KDA, POLYPEPTIDE 1, ISOFORM CRA_C;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: RPS6KB1, HCG_1815774;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SPODOPTERA FRUGIPERDA;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTB
KEYWDS PROTEIN KINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.WANG,C.ZHONG,J.DING
REVDAT 4 20-MAR-24 4L43 1 REMARK SEQADV
REVDAT 3 15-NOV-17 4L43 1 REMARK
REVDAT 2 04-SEP-13 4L43 1 JRNL
REVDAT 1 24-JUL-13 4L43 0
JRNL AUTH J.WANG,C.ZHONG,F.WANG,F.QU,J.DING
JRNL TITL CRYSTAL STRUCTURES OF S6K1 PROVIDE INSIGHTS INTO THE
JRNL TITL 2 REGULATION MECHANISM OF S6K1 BY THE HYDROPHOBIC MOTIF
JRNL REF BIOCHEM.J. V. 454 39 2013
JRNL REFN ISSN 0264-6021
JRNL PMID 23731517
JRNL DOI 10.1042/BJ20121863
REMARK 2
REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0102
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 8160
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.229
REMARK 3 R VALUE (WORKING SET) : 0.227
REMARK 3 FREE R VALUE : 0.279
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200
REMARK 3 FREE R VALUE TEST SET COUNT : 450
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08
REMARK 3 REFLECTION IN BIN (WORKING SET) : 574
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67
REMARK 3 BIN R VALUE (WORKING SET) : 0.3090
REMARK 3 BIN FREE R VALUE SET COUNT : 36
REMARK 3 BIN FREE R VALUE : 0.3260
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2498
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 28
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.17
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 4.36000
REMARK 3 B22 (A**2) : 4.36000
REMARK 3 B33 (A**2) : -6.54000
REMARK 3 B12 (A**2) : 2.18000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.475
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.090
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2584 ; 0.007 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3483 ; 1.028 ; 1.984
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 4.962 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.534 ;23.540
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;17.228 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.146 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.069 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1935 ; 0.004 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 1.905 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2507 ; 3.519 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1017 ; 2.846 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 976 ; 4.833 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2584 ; 2.186 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 58 A 394
REMARK 3 ORIGIN FOR THE GROUP (A): -39.7880 24.4082 -9.3852
REMARK 3 T TENSOR
REMARK 3 T11: 0.0794 T22: 0.0664
REMARK 3 T33: 0.0046 T12: -0.0241
REMARK 3 T13: -0.0160 T23: -0.0197
REMARK 3 L TENSOR
REMARK 3 L11: 0.2140 L22: 1.2862
REMARK 3 L33: 0.6022 L12: -0.1010
REMARK 3 L13: -0.0500 L23: -0.6566
REMARK 3 S TENSOR
REMARK 3 S11: -0.0210 S12: -0.0165 S13: 0.0159
REMARK 3 S21: -0.0218 S22: -0.0759 S23: -0.0825
REMARK 3 S31: 0.0951 S32: 0.0209 S33: 0.0969
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4L43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-13.
REMARK 100 THE DEPOSITION ID IS D_1000080155.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-MAR-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : CCD ADSC UNSUPPORTED-Q315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8690
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.900
REMARK 200 R MERGE (I) : 0.09800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 7.10
REMARK 200 R MERGE FOR SHELL (I) : 0.52000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.52
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM CITRATE, 0.1M BIS-TRIS
REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.16600
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.58300
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.58300
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.16600
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 49
REMARK 465 ALA A 50
REMARK 465 MET A 51
REMARK 465 SER A 52
REMARK 465 GLU A 53
REMARK 465 THR A 54
REMARK 465 SER A 55
REMARK 465 VAL A 56
REMARK 465 ASN A 57
REMARK 465 ILE A 221
REMARK 465 HIS A 222
REMARK 465 ASP A 223
REMARK 465 GLY A 224
REMARK 465 THR A 225
REMARK 465 VAL A 226
REMARK 465 THR A 227
REMARK 465 HIS A 228
REMARK 465 THR A 229
REMARK 465 PHE A 230
REMARK 465 CYS A 231
REMARK 465 ASP A 370
REMARK 465 SER A 371
REMARK 465 PRO A 372
REMARK 465 ASP A 373
REMARK 465 ASP A 374
REMARK 465 SER A 375
REMARK 465 THR A 376
REMARK 465 LEU A 377
REMARK 465 SER A 378
REMARK 465 GLU A 379
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 277 CG CD CE NZ
REMARK 470 GLU A 343 CG CD OE1 OE2
REMARK 470 LYS A 347 CG CD CE NZ
REMARK 470 LEU A 349 CG CD1 CD2
REMARK 470 LEU A 350 CG CD1 CD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 TYR A 193 CB - CA - C ANGL. DEV. = -16.3 DEGREES
REMARK 500 ARG A 194 CB - CA - C ANGL. DEV. = 21.2 DEGREES
REMARK 500 ARG A 194 N - CA - CB ANGL. DEV. = -12.6 DEGREES
REMARK 500 LEU A 349 CB - CA - C ANGL. DEV. = 12.0 DEGREES
REMARK 500 ASP A 360 CB - CA - C ANGL. DEV. = -16.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 71 -61.13 -101.92
REMARK 500 THR A 93 104.75 -52.05
REMARK 500 THR A 141 -165.37 -110.59
REMARK 500 ARG A 194 -90.37 59.52
REMARK 500 ASP A 213 63.89 68.20
REMARK 500 GLU A 219 -39.48 63.06
REMARK 500 LEU A 305 45.30 -103.56
REMARK 500 ASP A 319 -122.95 52.81
REMARK 500 LEU A 350 -74.97 -100.40
REMARK 500 GLN A 351 45.94 39.29
REMARK 500 SER A 352 170.60 129.86
REMARK 500 ARG A 365 -159.76 69.37
REMARK 500 GLN A 366 107.74 -166.14
REMARK 500 ALA A 381 26.69 47.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ASP A 360 SER A 361 -137.23
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5FI A 401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4L3J RELATED DB: PDB
REMARK 900 RELATED ID: 4L3L RELATED DB: PDB
REMARK 900 RELATED ID: 4L42 RELATED DB: PDB
REMARK 900 RELATED ID: 4L44 RELATED DB: PDB
REMARK 900 RELATED ID: 4L45 RELATED DB: PDB
REMARK 900 RELATED ID: 4L46 RELATED DB: PDB
DBREF 4L43 A 52 394 UNP Q7Z721 Q7Z721_HUMAN 75 417
SEQADV 4L43 GLY A 49 UNP Q7Z721 EXPRESSION TAG
SEQADV 4L43 ALA A 50 UNP Q7Z721 EXPRESSION TAG
SEQADV 4L43 MET A 51 UNP Q7Z721 EXPRESSION TAG
SEQADV 4L43 ALA A 389 UNP Q7Z721 THR 412 ENGINEERED MUTATION
SEQRES 1 A 346 GLY ALA MET SER GLU THR SER VAL ASN ARG GLY PRO GLU
SEQRES 2 A 346 LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL LEU
SEQRES 3 A 346 GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG LYS
SEQRES 4 A 346 VAL THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET LYS
SEQRES 5 A 346 VAL LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS ASP
SEQRES 6 A 346 THR ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU GLU
SEQRES 7 A 346 VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA PHE
SEQRES 8 A 346 GLN THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR LEU
SEQRES 9 A 346 SER GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU GLY
SEQRES 10 A 346 ILE PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA GLU
SEQRES 11 A 346 ILE SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY ILE
SEQRES 12 A 346 ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU ASN
SEQRES 13 A 346 HIS GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU CYS
SEQRES 14 A 346 LYS GLU SER ILE HIS ASP GLY THR VAL THR HIS THR PHE
SEQRES 15 A 346 CYS GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU MET
SEQRES 16 A 346 ARG SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER LEU
SEQRES 17 A 346 GLY ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO PRO
SEQRES 18 A 346 PHE THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS ILE
SEQRES 19 A 346 LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR GLN
SEQRES 20 A 346 GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG ASN
SEQRES 21 A 346 ALA ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA GLY
SEQRES 22 A 346 GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN TRP
SEQRES 23 A 346 GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE LYS
SEQRES 24 A 346 PRO LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE ASP
SEQRES 25 A 346 SER LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO ASP
SEQRES 26 A 346 ASP SER THR LEU SER GLU SER ALA ASN GLN VAL PHE LEU
SEQRES 27 A 346 GLY PHE ALA TYR VAL ALA PRO SER
HET 5FI A 401 28
HETNAM 5FI 2-{[4-(5-ETHYLPYRIMIDIN-4-YL)PIPERAZIN-1-YL]METHYL}-5-
HETNAM 2 5FI (TRIFLUOROMETHYL)-1H-BENZIMIDAZOLE
FORMUL 2 5FI C19 H21 F3 N6
HELIX 1 1 ARG A 64 GLU A 66 5 3
HELIX 2 2 LYS A 104 VAL A 108 1 5
HELIX 3 3 ASN A 110 VAL A 127 1 18
HELIX 4 4 MET A 159 GLY A 165 1 7
HELIX 5 5 MET A 168 LYS A 189 1 22
HELIX 6 6 LYS A 197 GLU A 199 5 3
HELIX 7 7 ALA A 238 MET A 243 1 6
HELIX 8 8 ALA A 250 GLY A 266 1 17
HELIX 9 9 ASN A 274 CYS A 285 1 12
HELIX 10 10 THR A 294 LEU A 305 1 12
HELIX 11 11 GLY A 318 ALA A 325 1 8
HELIX 12 12 HIS A 326 ARG A 330 5 5
HELIX 13 13 ASN A 333 ALA A 339 1 7
SHEET 1 A 6 PHE A 68 LYS A 76 0
SHEET 2 A 6 GLY A 80 LYS A 87 -1
SHEET 3 A 6 ILE A 96 LYS A 103 -1
SHEET 4 A 6 LYS A 144 GLU A 150 -1
SHEET 5 A 6 LEU A 135 GLN A 140 -1
SHEET 6 A 6 TYR A 390 VAL A 391 -1
SHEET 1 B 2 ILE A 201 LEU A 203 0
SHEET 2 B 2 VAL A 209 LEU A 211 -1
CISPEP 1 GLN A 383 VAL A 384 0 -0.71
SITE 1 AC1 15 LYS A 76 GLY A 77 TYR A 79 GLY A 80
SITE 2 AC1 15 LYS A 81 VAL A 82 ALA A 98 LEU A 102
SITE 3 AC1 15 GLU A 150 TYR A 151 LEU A 152 MET A 202
SITE 4 AC1 15 ASP A 213 CYS A 217 LYS A 218
CRYST1 79.572 79.572 112.749 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012567 0.007256 0.000000 0.00000
SCALE2 0.000000 0.014511 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008869 0.00000