HEADER TRANSFERASE 07-JUN-13 4L46 TITLE CRYSTAL STRUCTURES OF HUMAN P70S6K1-WT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RPS6KB1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 75-417; COMPND 5 SYNONYM: RIBOSOMAL PROTEIN S6 KINASE BETA-1, RIBOSOMAL PROTEIN S6 COMPND 6 KINASE, 70KDA, POLYPEPTIDE 1, ISOFORM CRA_C; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KB1, HCG_1815774; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTB KEYWDS PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,C.ZHONG,J.DING REVDAT 3 15-NOV-17 4L46 1 REMARK REVDAT 2 04-SEP-13 4L46 1 JRNL REVDAT 1 24-JUL-13 4L46 0 JRNL AUTH J.WANG,C.ZHONG,F.WANG,F.QU,J.DING JRNL TITL CRYSTAL STRUCTURES OF S6K1 PROVIDE INSIGHTS INTO THE JRNL TITL 2 REGULATION MECHANISM OF S6K1 BY THE HYDROPHOBIC MOTIF JRNL REF BIOCHEM.J. V. 454 39 2013 JRNL REFN ISSN 0264-6021 JRNL PMID 23731517 JRNL DOI 10.1042/BJ20121863 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.456 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.488 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2629 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3544 ; 1.916 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.218 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;20.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1954 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 0.780 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2527 ; 1.369 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 2.796 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1017 ; 3.850 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2629 ; 1.970 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3473 -23.6024 9.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.4563 T22: 0.1656 REMARK 3 T33: 0.2083 T12: 0.0658 REMARK 3 T13: -0.2728 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 2.3415 L22: 2.7801 REMARK 3 L33: 3.6332 L12: 1.3533 REMARK 3 L13: -1.1729 L23: -2.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0472 S13: 0.0448 REMARK 3 S21: -0.3763 S22: 0.2792 S23: 0.0256 REMARK 3 S31: 0.5933 S32: -0.0100 S33: -0.2368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4L46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CCD ADSC UNSUPPORTED-Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8815 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, 0.01M MAGNESIUM REMARK 280 CHLORIDE, 0.1M HEPES, PH 6.8, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.03133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.01567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.01567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.03133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 MET A 51 REMARK 465 SER A 52 REMARK 465 GLU A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 VAL A 56 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 VAL A 226 REMARK 465 THR A 227 REMARK 465 LEU A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 ASP A 370 REMARK 465 SER A 371 REMARK 465 PRO A 372 REMARK 465 ASP A 373 REMARK 465 ASP A 374 REMARK 465 SER A 375 REMARK 465 THR A 376 REMARK 465 LEU A 377 REMARK 465 SER A 378 REMARK 465 GLU A 379 REMARK 465 SER A 380 REMARK 465 ALA A 381 REMARK 465 ASN A 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 126 CG GLU A 126 CD 0.143 REMARK 500 HIS A 222 CE1 HIS A 222 NE2 -0.070 REMARK 500 GLY A 316 C PRO A 317 N 0.158 REMARK 500 PRO A 317 CD PRO A 317 N 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 92 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ASN A 92 N - CA - C ANGL. DEV. = -26.6 DEGREES REMARK 500 TYR A 193 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG A 194 N - CA - CB ANGL. DEV. = 16.4 DEGREES REMARK 500 CYS A 217 CA - CB - SG ANGL. DEV. = 16.4 DEGREES REMARK 500 HIS A 222 CG - ND1 - CE1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASN A 274 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 275 CA - C - N ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 275 O - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 317 C - N - CA ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 319 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP A 319 N - CA - CB ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP A 319 N - CA - C ANGL. DEV. = 28.3 DEGREES REMARK 500 GLN A 358 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO A 393 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 15.20 105.35 REMARK 500 ALA A 91 -135.36 46.22 REMARK 500 VAL A 108 1.44 -67.41 REMARK 500 ARG A 194 -128.85 51.06 REMARK 500 ASN A 204 -178.70 -68.71 REMARK 500 GLU A 219 153.50 -41.54 REMARK 500 ASP A 360 -160.88 -79.13 REMARK 500 ARG A 365 61.96 66.66 REMARK 500 THR A 367 137.03 -171.12 REMARK 500 PHE A 385 30.93 75.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 246 HIS A 247 142.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 231 SG REMARK 620 2 HIS A 222 ND1 104.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5FI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L3J RELATED DB: PDB REMARK 900 RELATED ID: 4L3L RELATED DB: PDB REMARK 900 RELATED ID: 4L42 RELATED DB: PDB REMARK 900 RELATED ID: 4L43 RELATED DB: PDB REMARK 900 RELATED ID: 4L44 RELATED DB: PDB REMARK 900 RELATED ID: 4L45 RELATED DB: PDB DBREF 4L46 A 52 394 UNP Q7Z721 Q7Z721_HUMAN 75 417 SEQADV 4L46 GLY A 49 UNP Q7Z721 EXPRESSION TAG SEQADV 4L46 ALA A 50 UNP Q7Z721 EXPRESSION TAG SEQADV 4L46 MET A 51 UNP Q7Z721 EXPRESSION TAG SEQRES 1 A 346 GLY ALA MET SER GLU THR SER VAL ASN ARG GLY PRO GLU SEQRES 2 A 346 LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL LEU SEQRES 3 A 346 GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG LYS SEQRES 4 A 346 VAL THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET LYS SEQRES 5 A 346 VAL LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS ASP SEQRES 6 A 346 THR ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU GLU SEQRES 7 A 346 VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA PHE SEQRES 8 A 346 GLN THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR LEU SEQRES 9 A 346 SER GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU GLY SEQRES 10 A 346 ILE PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA GLU SEQRES 11 A 346 ILE SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY ILE SEQRES 12 A 346 ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU ASN SEQRES 13 A 346 HIS GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU CYS SEQRES 14 A 346 LYS GLU SER ILE HIS ASP GLY THR VAL THR HIS THR PHE SEQRES 15 A 346 CYS GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU MET SEQRES 16 A 346 ARG SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER LEU SEQRES 17 A 346 GLY ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO PRO SEQRES 18 A 346 PHE THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS ILE SEQRES 19 A 346 LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR GLN SEQRES 20 A 346 GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG ASN SEQRES 21 A 346 ALA ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA GLY SEQRES 22 A 346 GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN TRP SEQRES 23 A 346 GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE LYS SEQRES 24 A 346 PRO LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE ASP SEQRES 25 A 346 SER LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO ASP SEQRES 26 A 346 ASP SER THR LEU SER GLU SER ALA ASN GLN VAL PHE LEU SEQRES 27 A 346 GLY PHE TPO TYR VAL ALA PRO SER MODRES 4L46 TPO A 389 THR PHOSPHOTHREONINE HET TPO A 389 11 HET 5FI A 401 28 HET SO4 A 402 5 HET ZN A 403 1 HETNAM TPO PHOSPHOTHREONINE HETNAM 5FI 2-{[4-(5-ETHYLPYRIMIDIN-4-YL)PIPERAZIN-1-YL]METHYL}-5- HETNAM 2 5FI (TRIFLUOROMETHYL)-1H-BENZIMIDAZOLE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 5FI C19 H21 F3 N6 FORMUL 3 SO4 O4 S 2- FORMUL 4 ZN ZN 2+ HELIX 1 1 ARG A 64 GLU A 66 5 3 HELIX 2 2 LYS A 104 VAL A 108 1 5 HELIX 3 3 ASN A 110 VAL A 127 1 18 HELIX 4 4 LEU A 157 GLY A 165 1 9 HELIX 5 5 MET A 168 LYS A 189 1 22 HELIX 6 6 ALA A 238 ARG A 244 1 7 HELIX 7 7 ALA A 250 GLY A 266 1 17 HELIX 8 8 ASN A 274 CYS A 285 1 12 HELIX 9 9 THR A 294 LEU A 305 1 12 HELIX 10 10 ASN A 308 ARG A 312 5 5 HELIX 11 11 ASP A 319 HIS A 326 1 8 HELIX 12 12 PRO A 327 ARG A 330 5 4 HELIX 13 13 ASN A 333 ALA A 339 1 7 HELIX 14 14 VAL A 356 ASP A 360 5 5 SHEET 1 A 6 PHE A 68 LYS A 76 0 SHEET 2 A 6 GLY A 80 LYS A 87 -1 O VAL A 82 N GLY A 75 SHEET 3 A 6 ILE A 96 LYS A 103 -1 O VAL A 101 N LYS A 81 SHEET 4 A 6 LYS A 144 GLU A 150 -1 O LEU A 149 N ALA A 98 SHEET 5 A 6 LEU A 135 THR A 141 -1 N PHE A 139 O TYR A 146 SHEET 6 A 6 TYR A 390 VAL A 391 -1 O TYR A 390 N ALA A 138 SHEET 1 B 3 GLY A 155 GLU A 156 0 SHEET 2 B 3 ILE A 201 LEU A 203 -1 O LEU A 203 N GLY A 155 SHEET 3 B 3 VAL A 209 LEU A 211 -1 O LYS A 210 N MET A 202 LINK C PHE A 388 N TPO A 389 1555 1555 1.32 LINK C TPO A 389 N TYR A 390 1555 1555 1.33 LINK SG CYS A 231 ZN ZN A 403 1555 1555 2.59 LINK ND1 HIS A 222 ZN ZN A 403 1555 1555 2.65 CISPEP 1 ASP A 360 SER A 361 0 -5.99 SITE 1 AC1 12 TYR A 79 GLY A 80 LYS A 81 ALA A 98 SITE 2 AC1 12 LEU A 102 GLU A 150 TYR A 151 LEU A 152 SITE 3 AC1 12 THR A 212 ASP A 213 LYS A 218 PHE A 359 SITE 1 AC2 4 ASN A 274 ARG A 275 ARG A 330 HIS A 331 SITE 1 AC3 4 CYS A 217 HIS A 222 HIS A 228 CYS A 231 CRYST1 81.139 81.139 111.047 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012325 0.007116 0.000000 0.00000 SCALE2 0.000000 0.014231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009005 0.00000