HEADER VIRAL PROTEIN, IMMUNE SYSTEM 11-JUN-13 4L5F TITLE CRYSTAL STRUCTURE OF DENV1-E106 FAB BOUND TO DENV-1 ENVELOPE PROTEIN TITLE 2 DIII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF E106 ANTIBODY (VH AND CH1 OF IGG2C); COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: VH AND CH1 DOMAINS; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE PROTEIN; COMPND 7 CHAIN: E; COMPND 8 FRAGMENT: DOMAIN III (UNP RESIDUES 293-399); COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF E106 ANTIBODY (KAPPA); COMPND 12 CHAIN: L; COMPND 13 FRAGMENT: VL AND CL DOMAINS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: IFN-ABR-/- C57BL/6 MICE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 8 ORGANISM_TAXID: 11053; SOURCE 9 STRAIN: 16007; SOURCE 10 GENE: E; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET21(A)+; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 STRAIN: IFN-ABR-/- C57BL/6 MICE KEYWDS ANTIBODY, FAB, NEUTRALIZING, VIRUS, ENVELOPE, VIRAL PROTEIN, IMMUNE KEYWDS 2 SYSTEM, ANTIBODY EPITOPE, INFECTIOUS DISEASE, CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS OF INFECTIOUS DISEASES (CSGID), NIAID, NATIONAL INSTITUTE KEYWDS 4 OF ALLERGY AND INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR M.A.EDELING,C.A.NELSON,D.H.FREMONT,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 2 INFECTIOUS DISEASES (CSGID) REVDAT 3 27-NOV-24 4L5F 1 SEQADV REVDAT 2 15-NOV-17 4L5F 1 REMARK REVDAT 1 11-DEC-13 4L5F 0 JRNL AUTH M.A.EDELING,S.K.AUSTIN,B.SHRESTHA,K.A.DOWD,S.MUKHERJEE, JRNL AUTH 2 C.A.NELSON,S.JOHNSON,M.N.MABILA,E.A.CHRISTIAN,J.RUCKER, JRNL AUTH 3 T.C.PIERSON,M.S.DIAMOND,D.H.FREMONT JRNL TITL CRYSTAL STRUCTURE OF DENV1-E106 FAB BOUND TO DENV-1 ENVELOPE JRNL TITL 2 PROTEIN DIII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 25912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9986 - 5.0717 1.00 2948 154 0.1597 0.2133 REMARK 3 2 5.0717 - 4.0364 1.00 2809 157 0.1429 0.1718 REMARK 3 3 4.0364 - 3.5293 1.00 2784 150 0.1858 0.2403 REMARK 3 4 3.5293 - 3.2081 1.00 2795 147 0.2171 0.2485 REMARK 3 5 3.2081 - 2.9789 1.00 2754 156 0.2285 0.2836 REMARK 3 6 2.9789 - 2.8038 1.00 2765 142 0.2436 0.3078 REMARK 3 7 2.8038 - 2.6637 1.00 2735 151 0.2557 0.3216 REMARK 3 8 2.6637 - 2.5480 0.99 2724 149 0.2699 0.3614 REMARK 3 9 2.5480 - 2.4501 0.83 2284 108 0.2738 0.3495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4158 REMARK 3 ANGLE : 0.822 5650 REMARK 3 CHIRALITY : 0.054 649 REMARK 3 PLANARITY : 0.004 717 REMARK 3 DIHEDRAL : 11.240 1505 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5929 -9.8706 -18.0531 REMARK 3 T TENSOR REMARK 3 T11: 0.4704 T22: 0.3155 REMARK 3 T33: 0.6086 T12: 0.0169 REMARK 3 T13: -0.1375 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 5.7548 L22: 2.2529 REMARK 3 L33: 5.6103 L12: 0.7034 REMARK 3 L13: -2.7741 L23: -1.5646 REMARK 3 S TENSOR REMARK 3 S11: 0.1350 S12: -0.1940 S13: -0.4650 REMARK 3 S21: 0.1037 S22: -0.1510 S23: -0.3314 REMARK 3 S31: 0.2245 S32: 0.2519 S33: 0.0296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 82A THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7840 -8.7934 -15.3131 REMARK 3 T TENSOR REMARK 3 T11: 0.4434 T22: 0.3480 REMARK 3 T33: 0.5601 T12: 0.0595 REMARK 3 T13: -0.0672 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 1.1390 L22: 1.9081 REMARK 3 L33: 1.7832 L12: 0.8949 REMARK 3 L13: -1.1280 L23: -0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.2392 S13: -0.0381 REMARK 3 S21: 0.1767 S22: 0.0859 S23: -0.1375 REMARK 3 S31: -0.0356 S32: 0.1702 S33: -0.0762 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9187 -18.8723 -16.5386 REMARK 3 T TENSOR REMARK 3 T11: 0.4209 T22: 0.5170 REMARK 3 T33: 0.3340 T12: 0.0231 REMARK 3 T13: 0.0047 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 8.5017 L22: 4.2591 REMARK 3 L33: 4.7440 L12: 0.7417 REMARK 3 L13: 2.4887 L23: -0.7537 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.7741 S13: -0.3677 REMARK 3 S21: -0.3690 S22: 0.0121 S23: 0.3262 REMARK 3 S31: 0.3725 S32: -0.3678 S33: 0.0182 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 297 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8258 -2.2762 -36.4775 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.4884 REMARK 3 T33: 0.8301 T12: -0.0189 REMARK 3 T13: 0.0330 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.9663 L22: 7.7791 REMARK 3 L33: 7.6598 L12: 3.8317 REMARK 3 L13: -0.2165 L23: 1.1385 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: 0.7769 S13: -0.5521 REMARK 3 S21: 0.7915 S22: -0.0573 S23: -1.3202 REMARK 3 S31: 0.5268 S32: 1.1965 S33: 0.2078 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 309 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3040 18.2282 -42.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.5346 T22: 0.5944 REMARK 3 T33: 0.6631 T12: -0.0481 REMARK 3 T13: 0.0320 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 5.3809 L22: 4.5032 REMARK 3 L33: 5.4432 L12: 4.8725 REMARK 3 L13: -5.4749 L23: -4.9720 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 1.2301 S13: 0.1614 REMARK 3 S21: -0.1238 S22: 0.5156 S23: 0.3494 REMARK 3 S31: 0.0682 S32: -0.6921 S33: -0.5204 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 320 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5972 2.0872 -35.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.3988 REMARK 3 T33: 0.4739 T12: 0.0162 REMARK 3 T13: -0.0417 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 8.6579 L22: 9.4251 REMARK 3 L33: 7.9781 L12: 4.8009 REMARK 3 L13: -5.1087 L23: -6.3081 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.1330 S13: -1.0489 REMARK 3 S21: 0.2654 S22: -0.1176 S23: 0.1765 REMARK 3 S31: 0.2107 S32: 0.6715 S33: 0.1787 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 337 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8836 4.3476 -54.6396 REMARK 3 T TENSOR REMARK 3 T11: 0.9469 T22: 1.2737 REMARK 3 T33: 0.7944 T12: 0.0009 REMARK 3 T13: 0.1811 T23: -0.3396 REMARK 3 L TENSOR REMARK 3 L11: 1.8725 L22: 9.5659 REMARK 3 L33: 4.6899 L12: -2.8036 REMARK 3 L13: 1.7951 L23: -6.6407 REMARK 3 S TENSOR REMARK 3 S11: 0.3702 S12: 1.1738 S13: -0.8869 REMARK 3 S21: -1.9913 S22: -0.9231 S23: -0.3700 REMARK 3 S31: 1.8395 S32: -0.0066 S33: 0.6438 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 346 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5705 5.6368 -52.2671 REMARK 3 T TENSOR REMARK 3 T11: 1.2954 T22: 1.6864 REMARK 3 T33: 1.4283 T12: 0.0175 REMARK 3 T13: 0.4507 T23: 0.2201 REMARK 3 L TENSOR REMARK 3 L11: 5.1786 L22: 4.2868 REMARK 3 L33: 2.5634 L12: -4.6660 REMARK 3 L13: 3.6401 L23: -3.2857 REMARK 3 S TENSOR REMARK 3 S11: -1.5372 S12: 3.6110 S13: -1.4511 REMARK 3 S21: -2.4261 S22: -0.6493 S23: -2.9848 REMARK 3 S31: -0.1878 S32: 2.0812 S33: 2.1826 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 351 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.1671 7.3154 -41.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.7632 T22: 0.6484 REMARK 3 T33: 1.2539 T12: 0.1012 REMARK 3 T13: 0.2174 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 8.6845 L22: 5.0297 REMARK 3 L33: 3.7934 L12: 1.3977 REMARK 3 L13: -0.7185 L23: -4.3410 REMARK 3 S TENSOR REMARK 3 S11: 1.0145 S12: -0.5572 S13: 0.2428 REMARK 3 S21: -2.2191 S22: -1.6808 S23: -1.2486 REMARK 3 S31: 1.3470 S32: 1.3833 S33: 0.6713 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 356 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.1069 1.9999 -31.7272 REMARK 3 T TENSOR REMARK 3 T11: 0.5774 T22: 0.6341 REMARK 3 T33: 0.7525 T12: -0.0306 REMARK 3 T13: -0.1702 T23: 0.1123 REMARK 3 L TENSOR REMARK 3 L11: 7.8591 L22: 3.3708 REMARK 3 L33: 3.2295 L12: 0.7126 REMARK 3 L13: -0.8010 L23: -3.3034 REMARK 3 S TENSOR REMARK 3 S11: 0.2717 S12: -1.3522 S13: -0.5198 REMARK 3 S21: 1.0956 S22: -0.2220 S23: -1.6989 REMARK 3 S31: -0.0503 S32: 1.0122 S33: -0.0276 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 361 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0189 7.7304 -33.6201 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.5252 REMARK 3 T33: 0.5511 T12: -0.0872 REMARK 3 T13: 0.0012 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 5.2991 L22: 9.3790 REMARK 3 L33: 7.3427 L12: 6.9585 REMARK 3 L13: -6.2044 L23: -8.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.6413 S12: -0.1506 S13: 0.5827 REMARK 3 S21: 0.6078 S22: -0.2867 S23: 0.3440 REMARK 3 S31: -0.4078 S32: 1.1749 S33: -0.4724 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 370 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7426 13.7207 -54.4963 REMARK 3 T TENSOR REMARK 3 T11: 0.7462 T22: 1.5557 REMARK 3 T33: 0.8992 T12: -0.4316 REMARK 3 T13: 0.2982 T23: 0.1885 REMARK 3 L TENSOR REMARK 3 L11: 3.0940 L22: 5.3922 REMARK 3 L33: 6.7162 L12: -3.9048 REMARK 3 L13: 0.0215 L23: -1.7942 REMARK 3 S TENSOR REMARK 3 S11: 0.5106 S12: 1.1802 S13: 2.1551 REMARK 3 S21: -0.1775 S22: 0.7931 S23: 0.2688 REMARK 3 S31: -0.4215 S32: -0.0700 S33: -1.1468 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 376 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.5701 1.4921 -47.0351 REMARK 3 T TENSOR REMARK 3 T11: 0.5128 T22: 0.5994 REMARK 3 T33: 0.5458 T12: 0.0307 REMARK 3 T13: -0.0061 T23: -0.2379 REMARK 3 L TENSOR REMARK 3 L11: 7.5791 L22: 9.0647 REMARK 3 L33: 4.6410 L12: -5.1236 REMARK 3 L13: 3.3450 L23: -6.4820 REMARK 3 S TENSOR REMARK 3 S11: 0.3409 S12: 0.7447 S13: -0.7716 REMARK 3 S21: -0.6307 S22: 0.0474 S23: 0.3901 REMARK 3 S31: 1.1301 S32: 0.1987 S33: -0.4771 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 387 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7865 13.0780 -51.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.4756 REMARK 3 T33: 0.6545 T12: -0.0960 REMARK 3 T13: 0.0029 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 5.9228 L22: 4.1784 REMARK 3 L33: 9.1073 L12: 4.9533 REMARK 3 L13: 0.7962 L23: 1.5403 REMARK 3 S TENSOR REMARK 3 S11: -0.6415 S12: 0.9038 S13: 1.2228 REMARK 3 S21: -1.1199 S22: 0.9544 S23: 1.2419 REMARK 3 S31: 0.0050 S32: -0.2574 S33: -0.1670 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8221 7.7194 -28.8988 REMARK 3 T TENSOR REMARK 3 T11: 0.4518 T22: 0.3134 REMARK 3 T33: 0.5303 T12: 0.0504 REMARK 3 T13: 0.0489 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 3.6023 L22: 3.6014 REMARK 3 L33: 3.5586 L12: 1.5746 REMARK 3 L13: -1.1017 L23: -0.1265 REMARK 3 S TENSOR REMARK 3 S11: 0.1792 S12: 0.4269 S13: 0.4562 REMARK 3 S21: 0.2196 S22: 0.2676 S23: 0.0682 REMARK 3 S31: -0.5411 S32: -0.3259 S33: -0.4093 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 70 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2009 6.8406 -26.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.4439 T22: 0.3491 REMARK 3 T33: 0.5130 T12: 0.0428 REMARK 3 T13: 0.0876 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 4.4787 L22: 5.6098 REMARK 3 L33: 2.6954 L12: 0.8062 REMARK 3 L13: -1.6141 L23: -1.1717 REMARK 3 S TENSOR REMARK 3 S11: 0.3237 S12: 0.6698 S13: 0.6881 REMARK 3 S21: 0.2451 S22: 0.1779 S23: 0.2875 REMARK 3 S31: -0.3458 S32: -0.2445 S33: -0.4525 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 102 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7162 -5.3855 -13.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.3897 REMARK 3 T33: 0.4462 T12: 0.0361 REMARK 3 T13: -0.0284 T23: 0.1245 REMARK 3 L TENSOR REMARK 3 L11: 5.2564 L22: 0.5949 REMARK 3 L33: 3.5585 L12: 1.9822 REMARK 3 L13: -3.7595 L23: -1.4896 REMARK 3 S TENSOR REMARK 3 S11: 0.2098 S12: 0.4411 S13: 0.4575 REMARK 3 S21: 0.0252 S22: 0.0336 S23: 0.0168 REMARK 3 S31: -0.1589 S32: -0.2652 S33: -0.2481 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6063 -9.8791 -5.5211 REMARK 3 T TENSOR REMARK 3 T11: 0.4086 T22: 0.2966 REMARK 3 T33: 0.3880 T12: -0.0668 REMARK 3 T13: -0.0199 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 7.5318 L22: 5.0688 REMARK 3 L33: 7.2621 L12: -0.0199 REMARK 3 L13: -2.3440 L23: -4.9202 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: 0.2056 S13: 0.0431 REMARK 3 S21: 0.2884 S22: 0.2782 S23: 0.1226 REMARK 3 S31: 0.0220 S32: -0.6422 S33: -0.0578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 MG/ML IN A WELL SOLUTION OF 22% PEG REMARK 280 6000, AND 0.1 M MES PH 5.0 (FINAL PH 5.7), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.33050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.29950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.91150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.29950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.33050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.91150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, E, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 289 REMARK 465 ALA E 290 REMARK 465 SER E 291 REMARK 465 MET E 292 REMARK 465 THR E 293 REMARK 465 LEU E 294 REMARK 465 LYS E 295 REMARK 465 GLY E 296 REMARK 465 GLY E 395 REMARK 465 SER E 396 REMARK 465 SER E 397 REMARK 465 ILE E 398 REMARK 465 GLY E 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 28 96.59 -67.02 REMARK 500 ALA H 88 -178.33 -178.13 REMARK 500 HIS E 317 30.37 -92.07 REMARK 500 GLN E 347 -72.89 -78.69 REMARK 500 ASP L 30 -122.37 52.98 REMARK 500 ALA L 84 -178.56 -177.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP00272 RELATED DB: TARGETTRACK DBREF 4L5F E 293 399 UNP Q8BE40 Q8BE40_9FLAV 293 399 DBREF 4L5F H 1 214 PDB 4L5F 4L5F 1 214 DBREF 4L5F L 1 213 PDB 4L5F 4L5F 1 213 SEQADV 4L5F MET E 289 UNP Q8BE40 EXPRESSION TAG SEQADV 4L5F ALA E 290 UNP Q8BE40 EXPRESSION TAG SEQADV 4L5F SER E 291 UNP Q8BE40 EXPRESSION TAG SEQADV 4L5F MET E 292 UNP Q8BE40 EXPRESSION TAG SEQRES 1 H 218 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 218 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 218 TYR SER PHE ILE GLY TYR TYR ILE HIS TRP VAL LYS GLN SEQRES 4 H 218 SER PRO GLU LYS SER LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 H 218 PRO ARG THR GLY ASP THR THR TYR ASN GLN LYS PHE LYS SEQRES 6 H 218 ALA LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 218 ALA TYR MET GLN LEU THR SER LEU THR SER GLU ASP SER SEQRES 8 H 218 ALA VAL TYR TYR CYS THR LYS ARG ILE ASN TRP ALA LEU SEQRES 9 H 218 ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER SEQRES 10 H 218 ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 218 VAL CYS GLY GLY THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 218 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU SEQRES 13 H 218 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 218 PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR LEU SER SEQRES 15 H 218 SER SER VAL THR VAL THR SER ASN THR TRP PRO SER GLN SEQRES 16 H 218 THR ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 218 LYS VAL ASP LYS LYS ILE GLU SER ARG ARG SEQRES 1 E 111 MET ALA SER MET THR LEU LYS GLY MET SER TYR VAL MET SEQRES 2 E 111 CYS THR GLY SER PHE LYS LEU GLU LYS GLU VAL ALA GLU SEQRES 3 E 111 THR GLN HIS GLY THR VAL LEU VAL GLN VAL LYS TYR GLU SEQRES 4 E 111 GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLN SEQRES 5 E 111 ASP GLU LYS GLY ALA THR GLN ASN GLY ARG LEU ILE THR SEQRES 6 E 111 ALA ASN PRO ILE VAL THR ASP LYS GLU LYS PRO VAL ASN SEQRES 7 E 111 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER TYR ILE VAL SEQRES 8 E 111 VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SER TRP PHE SEQRES 9 E 111 LYS LYS GLY SER SER ILE GLY SEQRES 1 L 213 GLU THR THR VAL THR GLN SER PRO ALA SER LEU SER VAL SEQRES 2 L 213 ALA THR GLY GLU LYS VAL THR ILE ARG CYS ILE THR SER SEQRES 3 L 213 THR ASP ILE ASP ASP ASP MET ASN TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY GLU ARG PRO LYS LEU LEU ILE SER GLU GLY ASN SEQRES 5 L 213 THR LEU ARG PRO GLY VAL PRO SER ARG PHE SER SER SER SEQRES 6 L 213 GLY TYR GLY THR ASP PHE VAL PHE THR ILE GLU ASN THR SEQRES 7 L 213 LEU SER GLU ASP VAL ALA ASP TYR PHE CYS LEU GLN SER SEQRES 8 L 213 ASP ASN LEU PRO LEU THR PHE GLY SER GLY THR LYS LEU SEQRES 9 L 213 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 213 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 213 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 213 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 213 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 213 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 213 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 213 PHE ASN ARG ASN GLU FORMUL 4 HOH *94(H2 O) HELIX 1 1 SER H 28 TYR H 32 5 5 HELIX 2 2 GLN H 61 LYS H 64 5 4 HELIX 3 3 THR H 83 SER H 87 5 5 HELIX 4 4 SER H 156 SER H 158 5 3 HELIX 5 5 PRO H 200 SER H 203 5 4 HELIX 6 6 LEU L 79 VAL L 83 5 5 HELIX 7 7 SER L 121 GLY L 128 1 8 HELIX 8 8 LYS L 183 ARG L 188 1 6 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 GLU H 10 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 B 6 ALA H 88 ILE H 96 -1 N ALA H 88 O LEU H 109 SHEET 4 B 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O THR H 58 N GLU H 50 SHEET 1 C 4 GLU H 10 VAL H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 C 4 ALA H 88 ILE H 96 -1 N ALA H 88 O LEU H 109 SHEET 4 C 4 ALA H 99 ASP H 101 -1 O ASP H 101 N LYS H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 D 4 LEU H 174 THR H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 D 4 VAL H 163 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 E 3 THR H 151 TRP H 154 0 SHEET 2 E 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 E 3 THR H 204 LYS H 209 -1 O THR H 204 N HIS H 199 SHEET 1 F 3 SER E 305 LEU E 308 0 SHEET 2 F 3 VAL E 320 GLU E 327 -1 O GLU E 327 N SER E 305 SHEET 3 F 3 ALA E 313 GLU E 314 -1 N ALA E 313 O LEU E 321 SHEET 1 G 3 SER E 305 LEU E 308 0 SHEET 2 G 3 VAL E 320 GLU E 327 -1 O GLU E 327 N SER E 305 SHEET 3 G 3 VAL E 365 ALA E 369 -1 O ILE E 367 N VAL E 322 SHEET 1 H 2 CYS E 333 LYS E 334 0 SHEET 2 H 2 ILE E 357 VAL E 358 -1 O VAL E 358 N CYS E 333 SHEET 1 I 3 PHE E 337 GLN E 340 0 SHEET 2 I 3 SER E 376 VAL E 380 -1 O VAL E 379 N SER E 338 SHEET 3 I 3 LEU E 387 TRP E 391 -1 O LEU E 389 N ILE E 378 SHEET 1 J 4 VAL L 4 SER L 7 0 SHEET 2 J 4 VAL L 19 THR L 25 -1 O ILE L 24 N THR L 5 SHEET 3 J 4 ASP L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 J 4 PHE L 62 GLY L 66 -1 N SER L 63 O THR L 74 SHEET 1 K 6 SER L 10 ALA L 14 0 SHEET 2 K 6 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 K 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 K 6 MET L 33 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 K 6 LYS L 45 SER L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 K 6 THR L 53 LEU L 54 -1 O THR L 53 N SER L 49 SHEET 1 L 4 SER L 10 ALA L 14 0 SHEET 2 L 4 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 L 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 L 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 M 4 THR L 114 PHE L 118 0 SHEET 2 M 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 M 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 M 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 N 4 SER L 153 ARG L 155 0 SHEET 2 N 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 N 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 N 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.03 SSBOND 3 CYS E 302 CYS E 333 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -1.32 CISPEP 2 GLU H 148 PRO H 149 0 1.15 CISPEP 3 TRP H 188 PRO H 189 0 2.61 CISPEP 4 ALA E 331 PRO E 332 0 1.73 CISPEP 5 SER L 7 PRO L 8 0 -6.53 CISPEP 6 LEU L 94 PRO L 95 0 2.60 CISPEP 7 TYR L 140 PRO L 141 0 3.42 CRYST1 82.661 91.823 92.599 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010799 0.00000