data_4L7X # _entry.id 4L7X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4L7X RCSB RCSB080293 WWPDB D_1000080293 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4L58 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4L7X _pdbx_database_status.recvd_initial_deposition_date 2013-06-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tong, Q.' 1 'Gatchalian, J.' 2 'Kutateladze, T.G.' 3 # _citation.id primary _citation.title 'Dido3 PHD Modulates Cell Differentiation and Division.' _citation.journal_abbrev 'Cell Rep' _citation.journal_volume 4 _citation.page_first 148 _citation.page_last 158 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2211-1247 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23831028 _citation.pdbx_database_id_DOI 10.1016/j.celrep.2013.06.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gatchalian, J.' 1 primary 'Futterer, A.' 2 primary 'Rothbart, S.B.' 3 primary 'Tong, Q.' 4 primary 'Rincon-Arano, H.' 5 primary 'Sanchez de Diego, A.' 6 primary 'Groudine, M.' 7 primary 'Strahl, B.D.' 8 primary 'Martinez-A, C.' 9 primary 'van Wely, K.H.' 10 primary 'Kutateladze, T.G.' 11 # _cell.entry_id 4L7X _cell.length_a 40.820 _cell.length_b 40.820 _cell.length_c 80.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L7X _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Death-inducer obliterator 1' 7280.341 1 ? ? 'PHD-type zinc finger domain residues 266-325' ? 2 polymer syn 'Histone H3 peptide' 1350.568 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'DIO-1, hDido1, Death-associated transcription factor 1, DATF-1' 2 'H3K4me3 peptide' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GPLPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQ GPLPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQ A ? 2 'polypeptide(L)' no yes 'ART(M3L)QTARKSTG' ARTKQTARKSTG U ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 PRO n 1 5 ASN n 1 6 ALA n 1 7 LEU n 1 8 TYR n 1 9 CYS n 1 10 ILE n 1 11 CYS n 1 12 ARG n 1 13 GLN n 1 14 PRO n 1 15 HIS n 1 16 ASN n 1 17 ASN n 1 18 ARG n 1 19 PHE n 1 20 MET n 1 21 ILE n 1 22 CYS n 1 23 CYS n 1 24 ASP n 1 25 ARG n 1 26 CYS n 1 27 GLU n 1 28 GLU n 1 29 TRP n 1 30 PHE n 1 31 HIS n 1 32 GLY n 1 33 ASP n 1 34 CYS n 1 35 VAL n 1 36 GLY n 1 37 ILE n 1 38 SER n 1 39 GLU n 1 40 ALA n 1 41 ARG n 1 42 GLY n 1 43 ARG n 1 44 LEU n 1 45 LEU n 1 46 GLU n 1 47 ARG n 1 48 ASN n 1 49 GLY n 1 50 GLU n 1 51 ASP n 1 52 TYR n 1 53 ILE n 1 54 CYS n 1 55 PRO n 1 56 ASN n 1 57 CYS n 1 58 THR n 1 59 ILE n 1 60 LEU n 1 61 GLN n 1 62 VAL n 1 63 GLN n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 M3L n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 LYS n 2 10 SER n 2 11 THR n 2 12 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DIDO1, C20orf158, DATF1, KIAA0333' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Peptide was synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DIDO1_HUMAN Q9BTC0 1 PNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQ 266 ? 2 PDB 4L7X 4L7X 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4L7X A 4 ? 63 ? Q9BTC0 266 ? 325 ? 4 63 2 2 4L7X U 1 ? 12 ? 4L7X 80 ? 91 ? 80 91 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4L7X GLY A 1 ? UNP Q9BTC0 ? ? 'EXPRESSION TAG' 1 1 1 4L7X PRO A 2 ? UNP Q9BTC0 ? ? 'EXPRESSION TAG' 2 2 1 4L7X LEU A 3 ? UNP Q9BTC0 ? ? 'EXPRESSION TAG' 3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4L7X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 36.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '0.1M HEPES pH8, 30% PEG6000, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si-111 double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 4L7X _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 28.7 _reflns.d_resolution_high 1.35 _reflns.number_obs 28593 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.4 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4L7X _refine.ls_number_reflns_obs 28593 _refine.ls_number_reflns_all 28593 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.682 _refine.ls_d_res_high 1.350 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.1329 _refine.ls_R_factor_all 0.14 _refine.ls_R_factor_R_work 0.1324 _refine.ls_R_factor_R_free 0.1422 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.98 _refine.ls_number_reflns_R_free 1425 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.07 _refine.pdbx_overall_phase_error 12.82 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 518 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 594 _refine_hist.d_res_high 1.350 _refine_hist.d_res_low 28.682 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 528 ? 'X-RAY DIFFRACTION' f_angle_d 1.169 ? ? 713 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.320 ? ? 201 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.076 ? ? 72 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 96 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.3500 1.3983 2711 0.1469 100.00 0.1811 . . 146 . . . . 'X-RAY DIFFRACTION' . 1.3983 1.4542 2758 0.1266 100.00 0.1682 . . 116 . . . . 'X-RAY DIFFRACTION' . 1.4542 1.5204 2704 0.1111 100.00 0.1658 . . 162 . . . . 'X-RAY DIFFRACTION' . 1.5204 1.6006 2696 0.1061 100.00 0.1586 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.6006 1.7009 2700 0.1022 100.00 0.1193 . . 170 . . . . 'X-RAY DIFFRACTION' . 1.7009 1.8322 2693 0.1078 100.00 0.1239 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.8322 2.0165 2734 0.1121 100.00 0.1411 . . 128 . . . . 'X-RAY DIFFRACTION' . 2.0165 2.3082 2731 0.1190 100.00 0.1307 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3082 2.9076 2722 0.1480 100.00 0.1350 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.9076 28.6885 2719 0.1504 100.00 0.1475 . . 139 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4L7X _struct.title 'Crystal structure of the DIDO PHD finger in complex with H3K4me3' _struct.pdbx_descriptor 'Death-inducer obliterator 1, Histone H3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4L7X _struct_keywords.pdbx_keywords 'CELL CYCLE, GENE REGULATION' _struct_keywords.text 'mitosis, Chromatin, CELL CYCLE, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 32 ? GLY A 36 ? GLY A 32 GLY A 36 1 ? 5 HELX_P HELX_P2 2 SER A 38 ? GLY A 49 ? SER A 38 GLY A 49 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B THR 3 C ? ? ? 1_555 B M3L 4 N ? ? U THR 82 U M3L 83 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? B M3L 4 C ? ? ? 1_555 B GLN 5 N ? ? U M3L 83 U GLN 84 1_555 ? ? ? ? ? ? ? 1.325 ? metalc1 metalc ? ? A HIS 31 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 31 A ZN 102 1_555 ? ? ? ? ? ? ? 2.187 ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 9 A ZN 102 1_555 ? ? ? ? ? ? ? 2.298 ? metalc3 metalc ? ? A CYS 34 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 34 A ZN 102 1_555 ? ? ? ? ? ? ? 2.300 ? metalc4 metalc ? ? A CYS 57 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 57 A ZN 101 1_555 ? ? ? ? ? ? ? 2.326 ? metalc5 metalc ? ? A CYS 11 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 11 A ZN 102 1_555 ? ? ? ? ? ? ? 2.329 ? metalc6 metalc ? ? A CYS 26 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 26 A ZN 101 1_555 ? ? ? ? ? ? ? 2.338 ? metalc7 metalc ? ? A CYS 23 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 23 A ZN 101 1_555 ? ? ? ? ? ? ? 2.353 ? metalc8 metalc ? ? A CYS 54 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 54 A ZN 101 1_555 ? ? ? ? ? ? ? 2.356 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 29 ? HIS A 31 ? TRP A 29 HIS A 31 A 2 MET A 20 ? CYS A 22 ? MET A 20 CYS A 22 A 3 THR B 3 ? M3L B 4 ? THR U 82 M3L U 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 30 ? O PHE A 30 N ILE A 21 ? N ILE A 21 A 2 3 N MET A 20 ? N MET A 20 O M3L B 4 ? O M3L U 83 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 23 ? CYS A 23 . ? 1_555 ? 2 AC1 4 CYS A 26 ? CYS A 26 . ? 1_555 ? 3 AC1 4 CYS A 54 ? CYS A 54 . ? 1_555 ? 4 AC1 4 CYS A 57 ? CYS A 57 . ? 1_555 ? 5 AC2 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 6 AC2 4 CYS A 11 ? CYS A 11 . ? 1_555 ? 7 AC2 4 HIS A 31 ? HIS A 31 . ? 1_555 ? 8 AC2 4 CYS A 34 ? CYS A 34 . ? 1_555 ? # _database_PDB_matrix.entry_id 4L7X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4L7X _atom_sites.fract_transf_matrix[1][1] 0.024498 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024498 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012404 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 CYS 34 34 34 CYS CYS A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ILE 59 59 ? ? ? A . n A 1 60 LEU 60 60 ? ? ? A . n A 1 61 GLN 61 61 ? ? ? A . n A 1 62 VAL 62 62 ? ? ? A . n A 1 63 GLN 63 63 ? ? ? A . n B 2 1 ALA 1 80 80 ALA ALA U . n B 2 2 ARG 2 81 81 ARG ARG U . n B 2 3 THR 3 82 82 THR THR U . n B 2 4 M3L 4 83 83 M3L M3L U . n B 2 5 GLN 5 84 84 GLN GLN U . n B 2 6 THR 6 85 85 THR THR U . n B 2 7 ALA 7 86 86 ALA ALA U . n B 2 8 ARG 8 87 ? ? ? U . n B 2 9 LYS 9 88 ? ? ? U . n B 2 10 SER 10 89 ? ? ? U . n B 2 11 THR 11 90 ? ? ? U . n B 2 12 GLY 12 91 ? ? ? U . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 101 1 ZN ZN A . D 3 ZN 1 102 2 ZN ZN A . E 4 HOH 1 201 1 HOH HOH A . E 4 HOH 2 202 2 HOH HOH A . E 4 HOH 3 203 3 HOH HOH A . E 4 HOH 4 204 4 HOH HOH A . E 4 HOH 5 205 5 HOH HOH A . E 4 HOH 6 206 6 HOH HOH A . E 4 HOH 7 207 7 HOH HOH A . E 4 HOH 8 208 8 HOH HOH A . E 4 HOH 9 209 9 HOH HOH A . E 4 HOH 10 210 10 HOH HOH A . E 4 HOH 11 211 11 HOH HOH A . E 4 HOH 12 212 12 HOH HOH A . E 4 HOH 13 213 13 HOH HOH A . E 4 HOH 14 214 14 HOH HOH A . E 4 HOH 15 215 15 HOH HOH A . E 4 HOH 16 216 16 HOH HOH A . E 4 HOH 17 217 17 HOH HOH A . E 4 HOH 18 218 18 HOH HOH A . E 4 HOH 19 219 19 HOH HOH A . E 4 HOH 20 220 20 HOH HOH A . E 4 HOH 21 221 21 HOH HOH A . E 4 HOH 22 222 22 HOH HOH A . E 4 HOH 23 223 23 HOH HOH A . E 4 HOH 24 224 24 HOH HOH A . E 4 HOH 25 225 25 HOH HOH A . E 4 HOH 26 226 26 HOH HOH A . E 4 HOH 27 227 28 HOH HOH A . E 4 HOH 28 228 29 HOH HOH A . E 4 HOH 29 229 30 HOH HOH A . E 4 HOH 30 230 31 HOH HOH A . E 4 HOH 31 231 32 HOH HOH A . E 4 HOH 32 232 33 HOH HOH A . E 4 HOH 33 233 35 HOH HOH A . E 4 HOH 34 234 36 HOH HOH A . E 4 HOH 35 235 37 HOH HOH A . E 4 HOH 36 236 38 HOH HOH A . E 4 HOH 37 237 39 HOH HOH A . E 4 HOH 38 238 40 HOH HOH A . E 4 HOH 39 239 41 HOH HOH A . E 4 HOH 40 240 42 HOH HOH A . E 4 HOH 41 241 43 HOH HOH A . E 4 HOH 42 242 45 HOH HOH A . E 4 HOH 43 243 46 HOH HOH A . E 4 HOH 44 244 47 HOH HOH A . E 4 HOH 45 245 48 HOH HOH A . E 4 HOH 46 246 49 HOH HOH A . E 4 HOH 47 247 51 HOH HOH A . E 4 HOH 48 248 52 HOH HOH A . E 4 HOH 49 249 53 HOH HOH A . E 4 HOH 50 250 56 HOH HOH A . E 4 HOH 51 251 57 HOH HOH A . E 4 HOH 52 252 58 HOH HOH A . E 4 HOH 53 253 59 HOH HOH A . E 4 HOH 54 254 60 HOH HOH A . E 4 HOH 55 255 61 HOH HOH A . E 4 HOH 56 256 63 HOH HOH A . E 4 HOH 57 257 64 HOH HOH A . E 4 HOH 58 258 65 HOH HOH A . E 4 HOH 59 259 66 HOH HOH A . E 4 HOH 60 260 67 HOH HOH A . E 4 HOH 61 261 68 HOH HOH A . E 4 HOH 62 262 69 HOH HOH A . E 4 HOH 63 263 71 HOH HOH A . E 4 HOH 64 264 72 HOH HOH A . E 4 HOH 65 265 73 HOH HOH A . E 4 HOH 66 266 74 HOH HOH A . F 4 HOH 1 101 27 HOH HOH U . F 4 HOH 2 102 34 HOH HOH U . F 4 HOH 3 103 44 HOH HOH U . F 4 HOH 4 104 50 HOH HOH U . F 4 HOH 5 105 54 HOH HOH U . F 4 HOH 6 106 55 HOH HOH U . F 4 HOH 7 107 62 HOH HOH U . F 4 HOH 8 108 70 HOH HOH U . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id U _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 83 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1240 ? 1 MORE -4 ? 1 'SSA (A^2)' 4300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 31 ? A HIS 31 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 102.1 ? 2 ND1 ? A HIS 31 ? A HIS 31 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 34 ? A CYS 34 ? 1_555 116.0 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 34 ? A CYS 34 ? 1_555 110.8 ? 4 ND1 ? A HIS 31 ? A HIS 31 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 11 ? 1_555 95.0 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 11 ? 1_555 113.6 ? 6 SG ? A CYS 34 ? A CYS 34 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 11 ? 1_555 117.5 ? 7 SG ? A CYS 57 ? A CYS 57 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 26 ? 1_555 107.4 ? 8 SG ? A CYS 57 ? A CYS 57 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 23 ? 1_555 112.3 ? 9 SG ? A CYS 26 ? A CYS 26 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 23 ? 1_555 106.1 ? 10 SG ? A CYS 57 ? A CYS 57 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 54 ? A CYS 54 ? 1_555 106.3 ? 11 SG ? A CYS 26 ? A CYS 26 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 54 ? A CYS 54 ? 1_555 114.3 ? 12 SG ? A CYS 23 ? A CYS 23 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 54 ? A CYS 54 ? 1_555 110.4 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHENIX phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 262 ? ? O A HOH 263 ? ? 1.82 2 1 O A HOH 258 ? ? O A HOH 265 ? ? 1.89 3 1 O U THR 85 ? ? O U HOH 106 ? ? 1.89 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 73.03 _pdbx_validate_torsion.psi -179.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 13 ? CD ? A GLN 13 CD 2 1 Y 0 A GLN 13 ? OE1 ? A GLN 13 OE1 3 1 Y 0 A ARG 25 ? CD ? A ARG 25 CD 4 1 Y 0 A ARG 25 ? NE ? A ARG 25 NE 5 1 Y 0 A ARG 25 ? NH1 ? A ARG 25 NH1 6 1 Y 0 A ARG 25 ? NH2 ? A ARG 25 NH2 7 1 Y 0 A THR 58 ? OG1 ? A THR 58 OG1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 59 ? A ILE 59 2 1 Y 1 A LEU 60 ? A LEU 60 3 1 Y 1 A GLN 61 ? A GLN 61 4 1 Y 1 A VAL 62 ? A VAL 62 5 1 Y 1 A GLN 63 ? A GLN 63 6 1 Y 1 U ARG 87 ? B ARG 8 7 1 Y 1 U LYS 88 ? B LYS 9 8 1 Y 1 U SER 89 ? B SER 10 9 1 Y 1 U THR 90 ? B THR 11 10 1 Y 1 U GLY 91 ? B GLY 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH #