HEADER CELL ADHESION 18-JUN-13 4L9D TITLE CRYSTAL STRUCTURE OF THE PKD1 DOMAIN FROM VIBRIO CHOLERAE TITLE 2 METALLOPROTEASE PRTV COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PKD1, UNP RESIDUES 755-839; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 579112; SOURCE 4 STRAIN: M66-2; SOURCE 5 GENE: PRTV, VCM66_A0219; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PKD DOMAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.EDWIN,G.STIER,A.E.SAUER-ERIKSSON REVDAT 3 28-FEB-24 4L9D 1 REMARK SEQADV LINK REVDAT 2 14-AUG-13 4L9D 1 JRNL REVDAT 1 10-JUL-13 4L9D 0 JRNL AUTH A.EDWIN,P.ROMPIKUNTAL,E.BJORN,G.STIER,S.N.WAI, JRNL AUTH 2 A.E.SAUER-ERIKSSON JRNL TITL CALCIUM BINDING BY THE PKD1 DOMAIN REGULATES INTERDOMAIN JRNL TITL 2 FLEXIBILITY IN VIBRIO CHOLERAE METALLOPROTEASE PRTV. JRNL REF FEBS OPEN BIO V. 3 263 2013 JRNL REFN ESSN 2211-5463 JRNL PMID 23905008 JRNL DOI 10.1016/J.FOB.2013.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 55335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.1760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1484 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1330 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2047 ; 2.192 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3116 ; 1.012 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ;13.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;36.461 ;26.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;11.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;10.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 231 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1798 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 324 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 763 ; 2.737 ; 0.677 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 762 ; 2.468 ; 0.667 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 980 ; 2.024 ; 1.007 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 981 ; 2.110 ; 1.014 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 721 ; 3.326 ; 0.944 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 721 ; 3.327 ; 0.943 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1061 ; 4.085 ; 1.316 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1947 ; 4.789 ; 8.302 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1786 ; 4.095 ; 7.105 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2813 ; 6.142 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 51 ;36.289 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3025 ;11.819 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0398 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM CITRATE AND 20% (W/V) PEG REMARK 280 8K, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.64850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.41650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.64850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.41650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 752 REMARK 465 ALA A 753 REMARK 465 MET A 754 REMARK 465 GLU A 755 REMARK 465 ASN A 756 REMARK 465 ASN A 839 REMARK 465 GLY B 752 REMARK 465 ALA B 753 REMARK 465 MET B 754 REMARK 465 GLU B 755 REMARK 465 ASN B 756 REMARK 465 PRO B 838 REMARK 465 ASN B 839 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 773 O HOH A 1088 1.75 REMARK 500 O HOH B 1083 O HOH B 1085 1.88 REMARK 500 O HOH A 1057 O HOH A 1120 2.03 REMARK 500 NE2 GLN B 775 O HOH B 1109 2.11 REMARK 500 OE1 GLN B 775 O HOH B 1082 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1115 O HOH A 1125 3744 1.98 REMARK 500 O HOH A 1038 O HOH B 1064 4455 1.99 REMARK 500 O HOH A 1133 O HOH B 1092 4455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 836 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PRO B 759 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ASP B 791 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 836 THR B 837 149.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 901 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 780 O REMARK 620 2 GLY A 783 O 89.3 REMARK 620 3 HOH A1043 O 91.9 88.3 REMARK 620 4 HOH A1053 O 176.5 90.5 84.6 REMARK 620 5 HOH A1062 O 92.3 90.8 175.7 91.2 REMARK 620 6 HOH A1108 O 86.4 175.6 91.0 93.8 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 757 O REMARK 620 2 ASP B 782 O 108.8 REMARK 620 3 ASP B 821 OD2 122.6 83.1 REMARK 620 4 ASP B 825 OD2 88.5 152.5 106.0 REMARK 620 5 HOH B1033 O 36.9 101.2 86.2 105.2 REMARK 620 6 HOH B1091 O 92.1 86.3 145.3 71.4 128.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 902 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 780 O REMARK 620 2 GLY B 783 O 91.5 REMARK 620 3 HOH B1001 O 90.3 88.5 REMARK 620 4 HOH B1072 O 56.4 136.5 117.0 REMARK 620 5 HOH B1105 O 173.5 91.0 83.8 124.4 REMARK 620 6 HOH B1127 O 76.5 159.9 75.7 47.5 99.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 903 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 826 O REMARK 620 2 HOH B1010 O 85.6 REMARK 620 3 HOH B1124 O 139.3 82.3 REMARK 620 4 HOH B1131 O 87.4 171.7 100.1 REMARK 620 5 HOH B1132 O 77.4 78.3 62.1 95.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 905 DBREF 4L9D A 755 839 UNP C3LUP3 C3LUP3_VIBCM 755 839 DBREF 4L9D B 755 839 UNP C3LUP3 C3LUP3_VIBCM 755 839 SEQADV 4L9D GLY A 752 UNP C3LUP3 EXPRESSION TAG SEQADV 4L9D ALA A 753 UNP C3LUP3 EXPRESSION TAG SEQADV 4L9D MET A 754 UNP C3LUP3 EXPRESSION TAG SEQADV 4L9D GLY B 752 UNP C3LUP3 EXPRESSION TAG SEQADV 4L9D ALA B 753 UNP C3LUP3 EXPRESSION TAG SEQADV 4L9D MET B 754 UNP C3LUP3 EXPRESSION TAG SEQRES 1 A 88 GLY ALA MET GLU ASN ILE ALA PRO VAL ALA ARG PHE GLU SEQRES 2 A 88 LEU LYS VAL GLU GLY LEU SER VAL MET SER GLN ASN THR SEQRES 3 A 88 SER SER ASP SER ASP GLY ASN ILE VAL SER TYR LEU TRP SEQRES 4 A 88 ASP PHE GLY ASN GLY GLN THR SER THR GLU ALA ALA PRO SEQRES 5 A 88 THR TRP SER TYR THR LYS ALA GLY SER TYR SER VAL THR SEQRES 6 A 88 LEU THR VAL THR ASP ASP LYS GLY ASP SER ASP THR HIS SEQRES 7 A 88 GLN GLN THR ILE LYS VAL ASP THR PRO ASN SEQRES 1 B 88 GLY ALA MET GLU ASN ILE ALA PRO VAL ALA ARG PHE GLU SEQRES 2 B 88 LEU LYS VAL GLU GLY LEU SER VAL MET SER GLN ASN THR SEQRES 3 B 88 SER SER ASP SER ASP GLY ASN ILE VAL SER TYR LEU TRP SEQRES 4 B 88 ASP PHE GLY ASN GLY GLN THR SER THR GLU ALA ALA PRO SEQRES 5 B 88 THR TRP SER TYR THR LYS ALA GLY SER TYR SER VAL THR SEQRES 6 B 88 LEU THR VAL THR ASP ASP LYS GLY ASP SER ASP THR HIS SEQRES 7 B 88 GLN GLN THR ILE LYS VAL ASP THR PRO ASN HET NA A 901 1 HET CL A 902 1 HET CL A 903 1 HET CA B 901 1 HET NA B 902 1 HET NA B 903 1 HET CL B 904 1 HET PEG B 905 7 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 NA 3(NA 1+) FORMUL 4 CL 3(CL 1-) FORMUL 6 CA CA 2+ FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *300(H2 O) SHEET 1 A 3 PHE A 763 GLU A 768 0 SHEET 2 A 3 SER A 771 ASN A 776 -1 O SER A 771 N GLU A 768 SHEET 3 A 3 THR A 804 SER A 806 -1 O TRP A 805 N VAL A 772 SHEET 1 B 4 THR A 797 SER A 798 0 SHEET 2 B 4 ILE A 785 ASP A 791 -1 N TRP A 790 O SER A 798 SHEET 3 B 4 GLY A 811 ASP A 821 -1 O THR A 816 N ASP A 791 SHEET 4 B 4 SER A 826 VAL A 835 -1 O GLN A 831 N VAL A 815 SHEET 1 C 3 PHE B 763 GLU B 768 0 SHEET 2 C 3 SER B 771 ASN B 776 -1 O SER B 771 N GLU B 768 SHEET 3 C 3 THR B 804 SER B 806 -1 O TRP B 805 N VAL B 772 SHEET 1 D 4 THR B 797 SER B 798 0 SHEET 2 D 4 ILE B 785 ASP B 791 -1 N TRP B 790 O SER B 798 SHEET 3 D 4 GLY B 811 ASP B 821 -1 O THR B 816 N ASP B 791 SHEET 4 D 4 SER B 826 VAL B 835 -1 O GLN B 831 N VAL B 815 LINK O ASP A 780 NA NA A 901 1555 1555 2.32 LINK O GLY A 783 NA NA A 901 1555 1555 2.37 LINK NA NA A 901 O HOH A1043 1555 1555 2.41 LINK NA NA A 901 O HOH A1053 1555 1555 2.41 LINK NA NA A 901 O HOH A1062 1555 1555 2.30 LINK NA NA A 901 O HOH A1108 1555 1555 2.41 LINK O BILE B 757 CA CA B 901 1555 1555 2.42 LINK O ASP B 780 NA NA B 902 1555 1555 2.40 LINK O ASP B 782 CA CA B 901 1555 1555 2.36 LINK O GLY B 783 NA NA B 902 1555 1555 2.49 LINK OD2 ASP B 821 CA CA B 901 1555 1555 2.47 LINK OD2 ASP B 825 CA CA B 901 1555 1555 2.47 LINK O SER B 826 NA NA B 903 1555 1555 2.26 LINK CA CA B 901 O HOH B1033 1555 1555 1.95 LINK CA CA B 901 O HOH B1091 1555 1555 2.81 LINK NA NA B 902 O HOH B1001 1555 1555 2.08 LINK NA NA B 902 O HOH B1072 1555 1555 2.58 LINK NA NA B 902 O HOH B1105 1555 1555 2.51 LINK NA NA B 902 O HOH B1127 1555 1555 2.61 LINK NA NA B 903 O HOH B1010 1555 1555 2.47 LINK NA NA B 903 O HOH B1124 1555 1555 2.38 LINK NA NA B 903 O HOH B1131 1555 1555 2.45 LINK NA NA B 903 O HOH B1132 1555 1555 2.73 CISPEP 1 ALA A 758 PRO A 759 0 -7.74 CISPEP 2 ALA B 758 PRO B 759 0 -20.96 SITE 1 AC1 6 ASP A 780 GLY A 783 HOH A1043 HOH A1053 SITE 2 AC1 6 HOH A1062 HOH A1108 SITE 1 AC2 4 LYS A 834 HOH A1056 HOH A1107 LYS B 834 SITE 1 AC3 5 THR A 808 LYS A 809 TYR A 813 HOH A1002 SITE 2 AC3 5 HOH A1009 SITE 1 AC4 6 ILE B 757 ASP B 782 ASP B 821 ASP B 825 SITE 2 AC4 6 HOH B1033 HOH B1091 SITE 1 AC5 7 ASP B 780 GLY B 783 HOH B1001 HOH B1061 SITE 2 AC5 7 HOH B1072 HOH B1105 HOH B1127 SITE 1 AC6 6 SER A 812 SER B 826 HOH B1010 HOH B1124 SITE 2 AC6 6 HOH B1131 HOH B1132 SITE 1 AC7 3 ILE B 785 HOH B1061 HOH B1067 SITE 1 AC8 12 GLU A 768 GLY A 769 LEU A 770 SER A 771 SITE 2 AC8 12 THR A 837 PRO A 838 HOH A1055 HOH A1069 SITE 3 AC8 12 GLN B 796 THR B 797 HOH B1015 HOH B1058 CRYST1 41.800 50.833 67.297 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014860 0.00000