HEADER PROTEIN TRANSPORT 18-JUN-13 4L9O TITLE CRYSTAL STRUCTURE OF THE SEC13-SEC16 BLADE-INSERTED COMPLEX FROM TITLE 2 PICHIA PASTORIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEC16,PROTEIN TRANSPORT PROTEIN SEC13; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-289, UNP RESIDUES 1030-1076,UNP RESIDUES 2- COMPND 5 289, UNP RESIDUES 1030-1076,UNP RESIDUES 2-289, UNP RESIDUES 1030- COMPND 6 1076,UNP RESIDUES 2-289, UNP RESIDUES 1030-1076; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOMAGATAELLA PASTORIS, KOMAGATAELLA PHAFFII SOURCE 3 (STRAIN GS115 / ATCC 20864); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 4922, 644223; SOURCE 6 STRAIN: GS115 / ATCC 20864; SOURCE 7 GENE: SEC16, SEC13, PAS_CHR1-3_0057; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA PROPELLER, COPII, VESICLE COAT BUDDING, NUCLEAR PORE COMPLEX KEYWDS 2 PROTEINS, COP-COATED VESICLES, ENDOPLASMIC RETICULUM, ACE1, PROTEIN KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.MCMAHON,P.D.JEFFREY,F.M.HUGHSON REVDAT 4 20-SEP-23 4L9O 1 REMARK LINK REVDAT 3 21-JUN-17 4L9O 1 COMPND DBREF REVDAT 2 05-FEB-14 4L9O 1 JRNL REVDAT 1 02-OCT-13 4L9O 0 JRNL AUTH N.BHARUCHA,Y.LIU,E.PAPANIKOU,C.MCMAHON,M.ESAKI,P.D.JEFFREY, JRNL AUTH 2 F.M.HUGHSON,B.S.GLICK JRNL TITL SEC16 INFLUENCES TRANSITIONAL ER SITES BY REGULATING RATHER JRNL TITL 2 THAN ORGANIZING COPII. JRNL REF MOL BIOL CELL V. 24 3406 2013 JRNL REFN ISSN 1059-1524 JRNL PMID 24006484 JRNL DOI 10.1091/MBC.E13-04-0185 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 76779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4359 - 4.8565 1.00 2727 139 0.2009 0.1925 REMARK 3 2 4.8565 - 3.8555 1.00 2668 125 0.1578 0.1890 REMARK 3 3 3.8555 - 3.3683 1.00 2634 141 0.1730 0.2048 REMARK 3 4 3.3683 - 3.0604 1.00 2624 138 0.1671 0.1967 REMARK 3 5 3.0604 - 2.8411 1.00 2631 144 0.1757 0.1997 REMARK 3 6 2.8411 - 2.6736 1.00 2637 123 0.1661 0.1816 REMARK 3 7 2.6736 - 2.5397 1.00 2606 145 0.1704 0.2045 REMARK 3 8 2.5397 - 2.4292 1.00 2605 138 0.1669 0.2078 REMARK 3 9 2.4292 - 2.3357 1.00 2578 164 0.1796 0.2352 REMARK 3 10 2.3357 - 2.2551 1.00 2601 144 0.1723 0.1951 REMARK 3 11 2.2551 - 2.1846 1.00 2605 160 0.1631 0.2054 REMARK 3 12 2.1846 - 2.1221 1.00 2591 141 0.1572 0.2057 REMARK 3 13 2.1221 - 2.0663 1.00 2590 125 0.1512 0.1828 REMARK 3 14 2.0663 - 2.0159 1.00 2604 138 0.1473 0.2079 REMARK 3 15 2.0159 - 1.9700 1.00 2595 145 0.1511 0.1785 REMARK 3 16 1.9700 - 1.9281 1.00 2593 146 0.1546 0.1951 REMARK 3 17 1.9281 - 1.8895 1.00 2582 137 0.1567 0.1902 REMARK 3 18 1.8895 - 1.8539 1.00 2603 137 0.1620 0.2088 REMARK 3 19 1.8539 - 1.8208 1.00 2592 123 0.1652 0.1723 REMARK 3 20 1.8208 - 1.7899 1.00 2630 121 0.1766 0.2361 REMARK 3 21 1.7899 - 1.7610 1.00 2577 127 0.1840 0.2590 REMARK 3 22 1.7610 - 1.7339 1.00 2621 142 0.1885 0.2204 REMARK 3 23 1.7339 - 1.7084 1.00 2548 136 0.1971 0.2503 REMARK 3 24 1.7084 - 1.6844 1.00 2597 125 0.2073 0.2380 REMARK 3 25 1.6844 - 1.6616 1.00 2605 139 0.2102 0.2621 REMARK 3 26 1.6616 - 1.6400 1.00 2558 140 0.2197 0.2463 REMARK 3 27 1.6400 - 1.6195 0.99 2599 142 0.2326 0.2546 REMARK 3 28 1.6195 - 1.6000 0.98 2506 147 0.2534 0.3033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5193 REMARK 3 ANGLE : 1.318 7055 REMARK 3 CHIRALITY : 0.086 754 REMARK 3 PLANARITY : 0.007 883 REMARK 3 DIHEDRAL : 13.571 1813 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82989 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3JRP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (W/V) PEG 3350, 200 MM CALCIUM REMARK 280 CHLORIDE, 200 MM SODIUM THIOCYANATE, 100 MM TRIS BUFFER, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.66000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1026 REMARK 465 GLU A 1038 REMARK 465 VAL A 1039 REMARK 465 TYR A 1040 REMARK 465 ASN A 1041 REMARK 465 GLY A 1079 REMARK 465 GLY A 1080 REMARK 465 GLY A 1081 REMARK 465 SER A 1082 REMARK 465 GLY A 1083 REMARK 465 GLY A 1084 REMARK 465 ASP A 2050 REMARK 465 GLY A 2051 REMARK 465 GLU A 2052 REMARK 465 ASN A 2053 REMARK 465 LEU A 2169 REMARK 465 PRO A 2170 REMARK 465 ASP A 2171 REMARK 465 GLN A 2300 REMARK 465 GLY B 1026 REMARK 465 SER B 1027 REMARK 465 HIS B 1028 REMARK 465 MET B 1029 REMARK 465 THR B 1030 REMARK 465 ALA B 1031 REMARK 465 PRO B 1032 REMARK 465 VAL B 1033 REMARK 465 VAL B 1034 REMARK 465 ARG B 1035 REMARK 465 ASN B 1036 REMARK 465 PRO B 1037 REMARK 465 GLU B 1038 REMARK 465 VAL B 1039 REMARK 465 TYR B 1040 REMARK 465 ASN B 1041 REMARK 465 ARG B 1042 REMARK 465 ASP B 1064 REMARK 465 THR B 1065 REMARK 465 TYR B 1066 REMARK 465 GLY B 1067 REMARK 465 GLN B 1068 REMARK 465 SER B 1069 REMARK 465 SER B 1078 REMARK 465 GLY B 1079 REMARK 465 GLY B 1080 REMARK 465 GLY B 1081 REMARK 465 SER B 1082 REMARK 465 GLY B 1083 REMARK 465 GLY B 1084 REMARK 465 LYS B 2142 REMARK 465 ASP B 2143 REMARK 465 GLY B 2144 REMARK 465 LEU B 2169 REMARK 465 PRO B 2170 REMARK 465 ASP B 2171 REMARK 465 ASP B 2299 REMARK 465 GLN B 2300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 2153 O HOH A 2649 1.37 REMARK 500 H ASP B 2020 O HOH B 2610 1.48 REMARK 500 O HOH B 2581 O HOH B 2609 1.88 REMARK 500 O HOH A 2584 O HOH A 2661 1.99 REMARK 500 O HOH A 2509 O HOH A 2563 2.00 REMARK 500 O HOH A 2594 O HOH A 2601 2.12 REMARK 500 O SER B 2218 O HOH B 2628 2.12 REMARK 500 O HOH B 2588 O HOH B 2600 2.13 REMARK 500 O HOH B 2530 O HOH B 2595 2.14 REMARK 500 OE1 GLU B 2064 O HOH B 2525 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A2157 -49.91 73.41 REMARK 500 SER A2221 -65.62 -2.68 REMARK 500 LYS B2042 7.89 81.22 REMARK 500 ASP B2096 -61.32 -135.44 REMARK 500 ILE B2157 -47.01 76.28 REMARK 500 PRO B2217 4.99 -69.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A2132 O REMARK 620 2 ILE A2157 O 79.3 REMARK 620 3 EDO A2406 O1 82.4 90.7 REMARK 620 4 EDO A2406 O2 145.3 82.9 68.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A2405 O1 REMARK 620 2 EDO A2405 O2 62.1 REMARK 620 3 HOH A2510 O 111.3 80.1 REMARK 620 4 HOH A2537 O 130.3 71.6 75.5 REMARK 620 5 HOH A2557 O 81.1 82.6 150.3 76.1 REMARK 620 6 HOH A2562 O 154.2 141.7 87.3 70.3 91.4 REMARK 620 7 HOH A2570 O 83.1 114.9 63.1 135.0 146.7 90.3 REMARK 620 8 HOH A2576 O 79.4 136.7 135.5 131.4 72.0 74.8 76.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B2132 O REMARK 620 2 ILE B2157 O 89.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2401 DBREF 4L9O A 1030 1076 UNP Q45TY0 Q45TY0_PICPA 1030 1076 DBREF 4L9O A 2013 2300 UNP P53024 SEC13_KOMPG 2 289 DBREF 4L9O B 1030 1076 UNP Q45TY0 Q45TY0_PICPA 1030 1076 DBREF 4L9O B 2013 2300 UNP P53024 SEC13_KOMPG 2 289 SEQADV 4L9O GLY A 1026 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O SER A 1027 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O HIS A 1028 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O MET A 1029 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O GLY A 1077 UNP Q45TY0 LINKER SEQADV 4L9O SER A 1078 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1079 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1080 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1081 UNP Q45TY0 LINKER SEQADV 4L9O SER A 1082 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1083 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1084 UNP Q45TY0 LINKER SEQADV 4L9O GLY A 1085 UNP Q45TY0 LINKER SEQADV 4L9O SER A 1086 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1026 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O SER B 1027 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O HIS B 1028 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O MET B 1029 UNP Q45TY0 EXPRESSION TAG SEQADV 4L9O GLY B 1077 UNP Q45TY0 LINKER SEQADV 4L9O SER B 1078 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1079 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1080 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1081 UNP Q45TY0 LINKER SEQADV 4L9O SER B 1082 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1083 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1084 UNP Q45TY0 LINKER SEQADV 4L9O GLY B 1085 UNP Q45TY0 LINKER SEQADV 4L9O SER B 1086 UNP Q45TY0 LINKER SEQRES 1 A 349 GLY SER HIS MET THR ALA PRO VAL VAL ARG ASN PRO GLU SEQRES 2 A 349 VAL TYR ASN ARG THR GLN PHE PRO ILE PHE HIS TRP CYS SEQRES 3 A 349 ARG GLY GLY LYS ALA LEU SER MET LEU PRO LYS PHE ASP SEQRES 4 A 349 THR TYR GLY GLN SER LYS VAL GLU ILE ASN ILE VAL GLY SEQRES 5 A 349 SER GLY GLY GLY SER GLY GLY GLY SER VAL THR ILE GLY SEQRES 6 A 349 ASN ALA HIS ASP ASP LEU ILE HIS ASP ALA VAL LEU ASP SEQRES 7 A 349 TYR TYR GLY ARG ARG LEU ALA THR CYS SER SER ASP LYS SEQRES 8 A 349 THR ILE LYS ILE PHE GLU ILE ASP GLY GLU ASN GLN ARG SEQRES 9 A 349 LEU VAL GLU THR LEU ILE GLY HIS GLU GLY PRO VAL TRP SEQRES 10 A 349 GLN VAL ALA TRP ALA HIS PRO LYS PHE GLY VAL ILE LEU SEQRES 11 A 349 ALA SER CYS SER TYR ASP GLY LYS VAL LEU ILE TRP LYS SEQRES 12 A 349 GLU ASP ASN GLY VAL TRP ASN LYS VAL ALA GLU HIS SER SEQRES 13 A 349 VAL HIS GLN ALA SER VAL ASN SER VAL SER TRP ALA PRO SEQRES 14 A 349 HIS GLU TYR GLY PRO VAL LEU LEU CYS ALA SER SER ASP SEQRES 15 A 349 GLY LYS ILE SER ILE VAL GLU PHE LYS ASP GLY GLY ALA SEQRES 16 A 349 LEU GLU PRO ILE VAL ILE GLN GLY HIS ALA ILE GLY VAL SEQRES 17 A 349 ASN ALA ALA SER TRP ALA PRO ILE SER LEU PRO ASP ASN SEQRES 18 A 349 THR ARG ARG PHE VAL SER GLY GLY CYS ASP ASN LEU VAL SEQRES 19 A 349 LYS ILE TRP ARG TYR ASP ASP ALA ALA LYS THR PHE ILE SEQRES 20 A 349 GLU GLU GLU ALA PHE GLN GLY HIS SER ASP TRP VAL ARG SEQRES 21 A 349 ASP VAL ALA TRP SER PRO SER ARG LEU SER LYS SER TYR SEQRES 22 A 349 ILE ALA THR ALA SER GLN ASP ARG THR VAL LEU ILE TRP SEQRES 23 A 349 THR LYS ASP GLY LYS SER ASN LYS TRP GLU LYS GLN PRO SEQRES 24 A 349 LEU THR LYS GLU LYS PHE PRO ASP VAL CYS TRP ARG ALA SEQRES 25 A 349 SER TRP SER LEU SER GLY ASN VAL LEU ALA ILE SER GLY SEQRES 26 A 349 GLY ASP ASN LYS VAL THR LEU TRP LYS GLU ASN ILE GLN SEQRES 27 A 349 GLY LYS TRP GLU SER ALA GLY GLU VAL ASP GLN SEQRES 1 B 349 GLY SER HIS MET THR ALA PRO VAL VAL ARG ASN PRO GLU SEQRES 2 B 349 VAL TYR ASN ARG THR GLN PHE PRO ILE PHE HIS TRP CYS SEQRES 3 B 349 ARG GLY GLY LYS ALA LEU SER MET LEU PRO LYS PHE ASP SEQRES 4 B 349 THR TYR GLY GLN SER LYS VAL GLU ILE ASN ILE VAL GLY SEQRES 5 B 349 SER GLY GLY GLY SER GLY GLY GLY SER VAL THR ILE GLY SEQRES 6 B 349 ASN ALA HIS ASP ASP LEU ILE HIS ASP ALA VAL LEU ASP SEQRES 7 B 349 TYR TYR GLY ARG ARG LEU ALA THR CYS SER SER ASP LYS SEQRES 8 B 349 THR ILE LYS ILE PHE GLU ILE ASP GLY GLU ASN GLN ARG SEQRES 9 B 349 LEU VAL GLU THR LEU ILE GLY HIS GLU GLY PRO VAL TRP SEQRES 10 B 349 GLN VAL ALA TRP ALA HIS PRO LYS PHE GLY VAL ILE LEU SEQRES 11 B 349 ALA SER CYS SER TYR ASP GLY LYS VAL LEU ILE TRP LYS SEQRES 12 B 349 GLU ASP ASN GLY VAL TRP ASN LYS VAL ALA GLU HIS SER SEQRES 13 B 349 VAL HIS GLN ALA SER VAL ASN SER VAL SER TRP ALA PRO SEQRES 14 B 349 HIS GLU TYR GLY PRO VAL LEU LEU CYS ALA SER SER ASP SEQRES 15 B 349 GLY LYS ILE SER ILE VAL GLU PHE LYS ASP GLY GLY ALA SEQRES 16 B 349 LEU GLU PRO ILE VAL ILE GLN GLY HIS ALA ILE GLY VAL SEQRES 17 B 349 ASN ALA ALA SER TRP ALA PRO ILE SER LEU PRO ASP ASN SEQRES 18 B 349 THR ARG ARG PHE VAL SER GLY GLY CYS ASP ASN LEU VAL SEQRES 19 B 349 LYS ILE TRP ARG TYR ASP ASP ALA ALA LYS THR PHE ILE SEQRES 20 B 349 GLU GLU GLU ALA PHE GLN GLY HIS SER ASP TRP VAL ARG SEQRES 21 B 349 ASP VAL ALA TRP SER PRO SER ARG LEU SER LYS SER TYR SEQRES 22 B 349 ILE ALA THR ALA SER GLN ASP ARG THR VAL LEU ILE TRP SEQRES 23 B 349 THR LYS ASP GLY LYS SER ASN LYS TRP GLU LYS GLN PRO SEQRES 24 B 349 LEU THR LYS GLU LYS PHE PRO ASP VAL CYS TRP ARG ALA SEQRES 25 B 349 SER TRP SER LEU SER GLY ASN VAL LEU ALA ILE SER GLY SEQRES 26 B 349 GLY ASP ASN LYS VAL THR LEU TRP LYS GLU ASN ILE GLN SEQRES 27 B 349 GLY LYS TRP GLU SER ALA GLY GLU VAL ASP GLN HET CA A2401 1 HET CA A2402 1 HET CL A2403 1 HET CL A2404 1 HET EDO A2405 8 HET EDO A2406 8 HET EDO A2407 10 HET EDO A2408 10 HET EDO A2409 10 HET CA B2401 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 3(CA 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 EDO 5(C2 H6 O2) FORMUL 13 HOH *299(H2 O) HELIX 1 1 HIS A 2074 GLY A 2078 5 5 HELIX 2 2 PRO A 2120 GLY A 2124 5 5 HELIX 3 3 HIS B 2074 GLY B 2078 5 5 HELIX 4 4 PRO B 2120 GLY B 2124 5 5 SHEET 1 A 4 ILE A1047 ARG A1052 0 SHEET 2 A 4 LYS A1055 MET A1059 -1 O MET A1059 N ILE A1047 SHEET 3 A 4 GLU A1072 VAL A1076 -1 O ASN A1074 N SER A1058 SHEET 4 A 4 SER A1086 GLY A2016 -1 O VAL A2013 N ILE A1075 SHEET 1 B 2 LYS A1062 PHE A1063 0 SHEET 2 B 2 SER A1069 LYS A1070 -1 O LYS A1070 N LYS A1062 SHEET 1 C 4 ILE A2023 LEU A2028 0 SHEET 2 C 4 ARG A2034 SER A2039 -1 O ALA A2036 N VAL A2027 SHEET 3 C 4 THR A2043 GLU A2048 -1 O LYS A2045 N THR A2037 SHEET 4 C 4 ARG A2055 ILE A2061 -1 O LEU A2060 N ILE A2044 SHEET 1 D 4 VAL A2067 TRP A2072 0 SHEET 2 D 4 VAL A2079 SER A2085 -1 O ALA A2082 N ALA A2071 SHEET 3 D 4 VAL A2090 ASP A2096 -1 O TRP A2093 N LEU A2081 SHEET 4 D 4 VAL A2099 HIS A2106 -1 O VAL A2103 N ILE A2092 SHEET 1 E 4 VAL A2113 TRP A2118 0 SHEET 2 E 4 VAL A2126 SER A2131 -1 O ALA A2130 N ASN A2114 SHEET 3 E 4 LYS A2135 GLU A2140 -1 O VAL A2139 N LEU A2127 SHEET 4 E 4 ILE A2150 GLN A2153 -1 O ILE A2152 N ILE A2136 SHEET 1 F 4 VAL A2159 TRP A2164 0 SHEET 2 F 4 ARG A2175 GLY A2180 -1 O VAL A2177 N SER A2163 SHEET 3 F 4 VAL A2185 ASP A2191 -1 O TRP A2188 N PHE A2176 SHEET 4 F 4 THR A2196 PHE A2203 -1 O PHE A2203 N VAL A2185 SHEET 1 G 4 VAL A2210 TRP A2215 0 SHEET 2 G 4 SER A2223 SER A2229 -1 O ALA A2228 N ARG A2211 SHEET 3 G 4 VAL A2234 LYS A2239 -1 O TRP A2237 N ILE A2225 SHEET 4 G 4 TRP A2246 PRO A2250 -1 O GLN A2249 N ILE A2236 SHEET 1 H 4 CYS A2260 TRP A2265 0 SHEET 2 H 4 LEU A2272 GLY A2276 -1 O ALA A2273 N SER A2264 SHEET 3 H 4 VAL A2281 GLU A2286 -1 O THR A2282 N ILE A2274 SHEET 4 H 4 TRP A2292 GLU A2297 -1 O ALA A2295 N LEU A2283 SHEET 1 I 4 ILE B1047 CYS B1051 0 SHEET 2 I 4 LYS B1055 PRO B1061 -1 O LYS B1055 N CYS B1051 SHEET 3 I 4 VAL B1071 VAL B1076 -1 O ASN B1074 N SER B1058 SHEET 4 I 4 VAL B2013 GLY B2016 -1 O VAL B2013 N ILE B1075 SHEET 1 J 4 ILE B2023 LEU B2028 0 SHEET 2 J 4 ARG B2034 SER B2039 -1 O CYS B2038 N HIS B2024 SHEET 3 J 4 THR B2043 ASP B2050 -1 O PHE B2047 N LEU B2035 SHEET 4 J 4 ASN B2053 ILE B2061 -1 O LEU B2060 N ILE B2044 SHEET 1 K 4 VAL B2067 TRP B2072 0 SHEET 2 K 4 VAL B2079 SER B2085 -1 O ALA B2082 N ALA B2071 SHEET 3 K 4 VAL B2090 GLU B2095 -1 O TRP B2093 N LEU B2081 SHEET 4 K 4 TRP B2100 HIS B2106 -1 O HIS B2106 N VAL B2090 SHEET 1 L 4 VAL B2113 TRP B2118 0 SHEET 2 L 4 VAL B2126 SER B2131 -1 O LEU B2128 N SER B2117 SHEET 3 L 4 LYS B2135 GLU B2140 -1 O SER B2137 N CYS B2129 SHEET 4 L 4 ILE B2150 GLN B2153 -1 O ILE B2150 N ILE B2138 SHEET 1 M 4 VAL B2159 TRP B2164 0 SHEET 2 M 4 ARG B2175 GLY B2180 -1 O VAL B2177 N SER B2163 SHEET 3 M 4 VAL B2185 ASP B2191 -1 O TRP B2188 N PHE B2176 SHEET 4 M 4 THR B2196 PHE B2203 -1 O PHE B2203 N VAL B2185 SHEET 1 N 4 VAL B2210 TRP B2215 0 SHEET 2 N 4 SER B2223 SER B2229 -1 O ALA B2228 N ARG B2211 SHEET 3 N 4 VAL B2234 LYS B2239 -1 O TRP B2237 N ILE B2225 SHEET 4 N 4 GLU B2247 PRO B2250 -1 O GLN B2249 N ILE B2236 SHEET 1 O 4 CYS B2260 TRP B2265 0 SHEET 2 O 4 LEU B2272 GLY B2276 -1 O SER B2275 N TRP B2261 SHEET 3 O 4 VAL B2281 GLU B2286 -1 O THR B2282 N ILE B2274 SHEET 4 O 4 TRP B2292 GLU B2297 -1 O ALA B2295 N LEU B2283 LINK O SER A2132 CA CA A2401 1555 1555 2.34 LINK O ILE A2157 CA CA A2401 1555 1555 2.32 LINK CA CA A2401 O1 EDO A2406 1555 1555 2.42 LINK CA CA A2401 O2 EDO A2406 1555 1555 2.58 LINK CA CA A2402 O1 EDO A2405 1555 1555 2.40 LINK CA CA A2402 O2 EDO A2405 1555 1555 2.42 LINK CA CA A2402 O HOH A2510 1555 1555 2.48 LINK CA CA A2402 O HOH A2537 1555 1555 2.47 LINK CA CA A2402 O HOH A2557 1555 1555 2.42 LINK CA CA A2402 O HOH A2562 1555 1555 2.34 LINK CA CA A2402 O HOH A2570 1555 1555 2.32 LINK CA CA A2402 O HOH A2576 1555 1555 2.35 LINK O SER B2132 CA CA B2401 1555 1555 2.23 LINK O ILE B2157 CA CA B2401 1555 1555 2.26 CISPEP 1 ILE B 2167 SER B 2168 0 -12.91 SITE 1 AC1 3 SER A2132 ILE A2157 EDO A2406 SITE 1 AC2 7 EDO A2405 HOH A2510 HOH A2537 HOH A2557 SITE 2 AC2 7 HOH A2562 HOH A2570 HOH A2576 SITE 1 AC3 4 ARG A1052 ALA A2071 TRP A2072 HOH A2563 SITE 1 AC4 2 TRP A2265 HOH A2605 SITE 1 AC5 9 GLN A2069 ALA A2162 SER A2163 ASP A2212 SITE 2 AC5 9 VAL A2213 CA A2402 HOH A2537 HOH A2573 SITE 3 AC5 9 HOH A2576 SITE 1 AC6 5 SER A2132 ASP A2133 ILE A2157 CA A2401 SITE 2 AC6 5 EDO A2407 SITE 1 AC7 3 ASP A2133 LYS A2135 EDO A2406 SITE 1 AC8 5 PHE A1048 SER A2264 ALA A2273 SER A2275 SITE 2 AC8 5 HOH A2639 SITE 1 AC9 4 ASP A2029 TYR A2030 TYR A2031 HOH A2533 SITE 1 BC1 2 SER B2132 ILE B2157 CRYST1 70.509 49.320 90.904 90.00 111.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014183 0.000000 0.005644 0.00000 SCALE2 0.000000 0.020276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011840 0.00000