HEADER LYASE/LYASE INHIBITOR 21-JUN-13 4LC8 TITLE CRYSTAL STRUCTURE OF THE MUTANT H128N OF OROTIDINE 5'-MONOPHOSPHATE TITLE 2 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM COMPLEXED TITLE 3 WITH THE INHIBITOR BMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 STRAIN: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H; SOURCE 5 GENE: PYRF, MTH_129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OMPDC FOLD, OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE, LYASE-LYASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,B.DESAI,J.A.GERLT,S.C.ALMO REVDAT 2 20-SEP-23 4LC8 1 REMARK SEQADV LINK REVDAT 1 03-JUL-13 4LC8 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,B.DESAI,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE MUTANT H128N OF OROTIDINE JRNL TITL 2 5'-MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM JRNL TITL 3 THERMOAUTOTROPHICUM COMPLEXED WITH THE INHIBITOR BMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 98758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5510 - 3.6358 0.99 4651 148 0.1462 0.1600 REMARK 3 2 3.6358 - 2.8864 1.00 4640 133 0.1559 0.1740 REMARK 3 3 2.8864 - 2.5217 1.00 4563 147 0.1664 0.1852 REMARK 3 4 2.5217 - 2.2912 1.00 4604 139 0.1567 0.1605 REMARK 3 5 2.2912 - 2.1270 1.00 4580 133 0.1491 0.1867 REMARK 3 6 2.1270 - 2.0017 1.00 4571 151 0.1454 0.1567 REMARK 3 7 2.0017 - 1.9014 1.00 4549 149 0.1496 0.1544 REMARK 3 8 1.9014 - 1.8187 1.00 4536 138 0.1520 0.1732 REMARK 3 9 1.8187 - 1.7487 1.00 4571 152 0.1536 0.1922 REMARK 3 10 1.7487 - 1.6883 1.00 4558 152 0.1532 0.1638 REMARK 3 11 1.6883 - 1.6355 1.00 4546 128 0.1522 0.1764 REMARK 3 12 1.6355 - 1.5888 1.00 4530 159 0.1554 0.1771 REMARK 3 13 1.5888 - 1.5470 1.00 4555 158 0.1598 0.1696 REMARK 3 14 1.5470 - 1.5092 1.00 4522 141 0.1727 0.2264 REMARK 3 15 1.5092 - 1.4749 1.00 4554 141 0.1927 0.2122 REMARK 3 16 1.4749 - 1.4435 1.00 4589 133 0.1957 0.2276 REMARK 3 17 1.4435 - 1.4146 1.00 4518 137 0.1947 0.2134 REMARK 3 18 1.4146 - 1.3879 1.00 4535 140 0.2082 0.2242 REMARK 3 19 1.3879 - 1.3632 1.00 4562 125 0.2191 0.2314 REMARK 3 20 1.3632 - 1.3400 1.00 4570 141 0.2476 0.2511 REMARK 3 21 1.3400 - 1.3180 0.98 4492 117 0.2783 0.3118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3634 REMARK 3 ANGLE : 1.082 4944 REMARK 3 CHIRALITY : 0.075 554 REMARK 3 PLANARITY : 0.007 667 REMARK 3 DIHEDRAL : 12.524 1437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 19.8652 7.0209 10.5832 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0401 REMARK 3 T33: 0.0634 T12: -0.0014 REMARK 3 T13: 0.0043 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.3743 L22: 0.5638 REMARK 3 L33: 0.6229 L12: -0.0496 REMARK 3 L13: 0.2081 L23: -0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0119 S13: 0.0939 REMARK 3 S21: -0.0218 S22: -0.0124 S23: -0.0498 REMARK 3 S31: -0.0534 S32: 0.0766 S33: 0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 0.4564 -7.1594 22.5684 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0512 REMARK 3 T33: 0.0687 T12: 0.0065 REMARK 3 T13: 0.0020 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.1426 L22: 0.6588 REMARK 3 L33: 1.1849 L12: 0.3247 REMARK 3 L13: -0.2433 L23: -0.2084 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.1839 S13: -0.1225 REMARK 3 S21: 0.0326 S22: -0.0425 S23: -0.0176 REMARK 3 S31: 0.0836 S32: 0.0289 S33: 0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.318 REMARK 200 RESOLUTION RANGE LOW (A) : 32.551 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3LTP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M TRIS, 0.2M REMARK 280 MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.85150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 VAL B 8 REMARK 465 ASN B 227 REMARK 465 PRO B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 52.93 38.36 REMARK 500 ALA A 74 47.84 -148.79 REMARK 500 PHE A 134 -42.71 -131.52 REMARK 500 ASN B 13 17.02 59.31 REMARK 500 ALA B 74 41.75 -150.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 546 O REMARK 620 2 HOH A 622 O 156.5 REMARK 620 3 HOH A 653 O 74.6 92.2 REMARK 620 4 HOH B 655 O 88.4 99.9 160.0 REMARK 620 5 HOH B 667 O 93.9 106.1 92.2 99.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 221 O REMARK 620 2 HOH B 455 O 87.9 REMARK 620 3 HOH B 484 O 89.8 88.7 REMARK 620 4 HOH B 535 O 91.7 177.8 93.5 REMARK 620 5 HOH B 539 O 91.7 91.9 178.4 86.0 REMARK 620 6 HOH B 595 O 175.0 87.0 90.1 93.3 88.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LTP RELATED DB: PDB REMARK 900 THE WT PROTEIN COMPLEXED WITH THE SAME INHIBITOR REMARK 900 RELATED ID: 4LC6 RELATED DB: PDB DBREF 4LC8 A 1 228 UNP O26232 PYRF_METTH 1 228 DBREF 4LC8 B 1 228 UNP O26232 PYRF_METTH 1 228 SEQADV 4LC8 PRO A 101 UNP O26232 ARG 101 ENGINEERED MUTATION SEQADV 4LC8 ASN A 128 UNP O26232 HIS 128 ENGINEERED MUTATION SEQADV 4LC8 PRO B 101 UNP O26232 ARG 101 ENGINEERED MUTATION SEQADV 4LC8 ASN B 128 UNP O26232 HIS 128 ENGINEERED MUTATION SEQRES 1 A 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 A 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 A 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 A 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 A 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 A 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 A 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 A 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 A 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 A 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER ASN PRO GLY SEQRES 11 A 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 A 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 A 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 A 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 A 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 A 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 A 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE ILE GLU SER SEQRES 18 A 228 ILE LYS ASP LEU LEU ASN PRO SEQRES 1 B 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 B 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 B 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 B 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 B 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 B 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 B 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 B 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 B 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 B 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER ASN PRO GLY SEQRES 11 B 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 B 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 B 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 B 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 B 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 B 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 B 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE ILE GLU SER SEQRES 18 B 228 ILE LYS ASP LEU LEU ASN PRO HET BMP A 301 22 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET MG A 305 1 HET BMP B 301 22 HET CL B 302 1 HET CL B 303 1 HET EDO B 304 4 HET MG B 305 1 HETNAM BMP 6-HYDROXYURIDINE-5'-PHOSPHATE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BMP 2(C9 H13 N2 O10 P) FORMUL 4 CL 5(CL 1-) FORMUL 7 MG 2(MG 2+) FORMUL 11 EDO C2 H6 O2 FORMUL 13 HOH *521(H2 O) HELIX 1 1 VAL A 11 ASN A 13 5 3 HELIX 2 2 ASN A 23 VAL A 34 1 12 HELIX 3 3 TYR A 45 GLY A 52 1 8 HELIX 4 4 MET A 53 PHE A 63 1 11 HELIX 5 5 ILE A 76 ALA A 90 1 15 HELIX 6 6 GLY A 102 GLY A 117 1 16 HELIX 7 7 ASN A 128 MET A 133 5 6 HELIX 8 8 PHE A 134 GLY A 150 1 17 HELIX 9 9 ARG A 160 GLY A 172 1 13 HELIX 10 10 ASP A 188 LEU A 193 1 6 HELIX 11 11 GLY A 202 LEU A 207 1 6 HELIX 12 12 ASN A 210 ILE A 222 1 13 HELIX 13 13 LYS A 223 LEU A 226 5 4 HELIX 14 14 VAL B 11 ASN B 13 5 3 HELIX 15 15 ASN B 23 VAL B 34 1 12 HELIX 16 16 ARG B 35 ILE B 38 5 4 HELIX 17 17 TYR B 45 GLY B 52 1 8 HELIX 18 18 MET B 53 GLY B 64 1 12 HELIX 19 19 ILE B 76 ALA B 90 1 15 HELIX 20 20 GLY B 102 GLY B 117 1 16 HELIX 21 21 ASN B 128 MET B 133 5 6 HELIX 22 22 PHE B 134 GLY B 150 1 17 HELIX 23 23 ARG B 160 GLY B 172 1 13 HELIX 24 24 ASP B 188 LEU B 193 1 6 HELIX 25 25 GLY B 202 LEU B 207 1 6 HELIX 26 26 ASN B 210 ILE B 222 1 13 HELIX 27 27 LYS B 223 LEU B 226 5 4 SHEET 1 A 9 LEU A 15 MET A 19 0 SHEET 2 A 9 THR A 40 GLY A 44 1 O LYS A 42 N LEU A 17 SHEET 3 A 9 ARG A 66 VAL A 73 1 O ARG A 66 N VAL A 41 SHEET 4 A 9 ALA A 94 HIS A 98 1 O ALA A 94 N ALA A 69 SHEET 5 A 9 GLU A 119 LEU A 123 1 O PHE A 121 N VAL A 97 SHEET 6 A 9 ASN A 153 VAL A 155 1 O ASN A 153 N LEU A 122 SHEET 7 A 9 PHE A 176 SER A 179 1 O PHE A 176 N TYR A 154 SHEET 8 A 9 ALA A 198 VAL A 201 1 O ILE A 200 N SER A 179 SHEET 9 A 9 LEU A 15 MET A 19 1 N ILE A 16 O ILE A 199 SHEET 1 B 9 LEU B 15 MET B 19 0 SHEET 2 B 9 THR B 40 GLY B 44 1 O LYS B 42 N LEU B 17 SHEET 3 B 9 ARG B 66 VAL B 73 1 O ASP B 70 N ILE B 43 SHEET 4 B 9 ALA B 94 HIS B 98 1 O ALA B 94 N ALA B 69 SHEET 5 B 9 GLU B 119 LEU B 123 1 O PHE B 121 N VAL B 97 SHEET 6 B 9 ASN B 153 VAL B 155 1 O ASN B 153 N LEU B 122 SHEET 7 B 9 PHE B 176 SER B 179 1 O PHE B 176 N TYR B 154 SHEET 8 B 9 ALA B 198 VAL B 201 1 O ILE B 200 N SER B 179 SHEET 9 B 9 LEU B 15 MET B 19 1 N ILE B 16 O ILE B 199 LINK MG MG A 305 O HOH A 546 1555 1555 2.59 LINK MG MG A 305 O HOH A 622 1555 1555 2.24 LINK MG MG A 305 O HOH A 653 1555 1555 1.97 LINK MG MG A 305 O HOH B 655 1555 1555 1.97 LINK MG MG A 305 O HOH B 667 1555 1555 1.98 LINK O SER B 221 MG MG B 305 1555 1555 2.03 LINK MG MG B 305 O HOH B 455 1555 1555 1.98 LINK MG MG B 305 O HOH B 484 1555 1555 2.21 LINK MG MG B 305 O HOH B 535 1555 1555 2.14 LINK MG MG B 305 O HOH B 539 1555 1555 2.07 LINK MG MG B 305 O HOH B 595 1555 1555 2.22 SITE 1 AC1 21 ASP A 20 LYS A 42 ASP A 70 LYS A 72 SITE 2 AC1 21 MET A 126 SER A 127 PRO A 180 VAL A 182 SITE 3 AC1 21 GLN A 185 GLY A 202 ARG A 203 HOH A 406 SITE 4 AC1 21 HOH A 408 HOH A 413 HOH A 415 HOH A 416 SITE 5 AC1 21 HOH A 420 HOH A 423 ASP B 75 ILE B 76 SITE 6 AC1 21 THR B 79 SITE 1 AC2 2 ASP A 104 GLY B 130 SITE 1 AC3 3 ARG A 160 PRO A 161 GLU A 162 SITE 1 AC4 4 PRO A 77 GLU A 78 HOH A 585 HOH B 453 SITE 1 AC5 5 HOH A 546 HOH A 622 HOH A 653 HOH B 655 SITE 2 AC5 5 HOH B 667 SITE 1 AC6 20 ASP A 75 ILE A 76 THR A 79 ASP B 20 SITE 2 AC6 20 LYS B 42 ASP B 70 LYS B 72 MET B 126 SITE 3 AC6 20 SER B 127 PRO B 180 GLN B 185 GLY B 202 SITE 4 AC6 20 ARG B 203 HOH B 401 HOH B 402 HOH B 405 SITE 5 AC6 20 HOH B 407 HOH B 410 HOH B 420 HOH B 461 SITE 1 AC7 3 GLY A 130 ASP B 104 ARG B 107 SITE 1 AC8 5 HOH A 472 HOH A 651 PRO B 77 GLU B 78 SITE 2 AC8 5 HOH B 664 SITE 1 AC9 7 LEU B 21 MET B 22 ASN B 23 HOH B 583 SITE 2 AC9 7 HOH B 628 HOH B 645 HOH B 654 SITE 1 BC1 6 SER B 221 HOH B 455 HOH B 484 HOH B 535 SITE 2 BC1 6 HOH B 539 HOH B 595 CRYST1 59.958 63.703 61.740 90.00 115.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016678 0.000000 0.007884 0.00000 SCALE2 0.000000 0.015698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017915 0.00000